Search

The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the …

With collaborative user projects, the JGI’s Plant Program delves into … RNA-seq analyzed in a consistant computational framework. It enables cross-species comparisons, advancing … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

Miscanthus  sequence offers insights into benefits of polyploidy … The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … numerous wild Miscanthus lineages to better understand the genetic diversity of the grass, which could help in …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of …

… … DAN UDWARY: Hey everyone and welcome back to a new session of … I wanted to tell you about in this introduction. First and foremost, our interview this week is with Professor Brian … Very familiar with working actinomycetes. We can also genetically manipulate them. We can do strain improvements. …

… … DAN: Hey, everybody. Welcome back for another episode of … And I really dove into microbial physiology and microbial genetics, and really away from chemistry and synthesizing … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

DAN UDWARY: You’re listening to the Department of Energy … ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …

… … Dan Udwary: You’re listening to the Department of Energy … been great fun to actually work with so many people on this framework. And I think this is really– I personally like … especially across species that might be a little bit more genetically distant where the BGCs may have drifted but they …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample … to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … de novo assembly. For counting: text file of gene counts (mapped against reference transcriptome or de novo assembly), …

… … DAN UDWARY: You’re listening to the Department of Energy … to everything, but I always thought the conceptual framework was useful, at least. Certainly, I can see many, … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …