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… improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … interactions, focusing on how environmental stress and microbial communities affect plant growth and … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI …

… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … … Single-cell characterization of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … from the GEM catalog (in green) and previously existing reference genomes (in gray). Around the phylogenetic tree, …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … metagenomic data with detailed characterization of model systems to explore the dynamics of microbial …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal …

Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … similarity to a gene cluster with a known compound from the reference database: It must be identical. It must be that … paper on a new version of antiSMASH. But that gave so much stress around these deadlines, that we thought, OK, it’s …

The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … and nutrient exchange, as well as microbial and plant responses to environmental changes. With advanced mass …

… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … phylogenetic relationships and to provide valuable reference genomes in under-populated areas of the tree of … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …