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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome … experience and capabilities in the analysis, annotation, comparative analysis, and interpretation of sequence, …

… that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or … miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM database …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from there, … would have really done a somewhat exhaustive chemical analysis of a bacterium that they’re interested in, usually …

… focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …

And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … tool. It’s the best thing that we have. And its rule-based analysis is second to none. And it’s the most valuable thing … a BGC fragment can be useful in some way if you’re doing comparative analysis. We want to make sure we had everything …

The User Support Analysis group provides computational analysis for new … We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product …

… the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is advancing … The  Open Green Genomes (OGG) project seeks to develop comparative high quality genomes and annotations across the … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … hear about something I’ve been working on for what feels like forever, and we also recorded a proper introduction … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …