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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …
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Partnerships: Adopt-A-Genome
… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …
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Publications
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Natural Prodcast Episode 10: A Primer on Genome Mining
I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … I could come up for it is that secondary metabolism is ancient and, therefore, widespread. So if secondary …
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Ancient hybridizations among the ancestral genomes of bread wheat
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Metagenome Program
Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … catalog of viral, microbial, and microeukaryote genomes and mobile genetic elements, linked to custom …
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Natural Prodcast Episode 22: Alison Narayan
Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … of sequences that we worked with JGI on, and those are ancestral protein sequences. And so starting from some of … in a limited number. But what we don’t have is the same breadth as what we have and how you can buy ligands, right? …
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Natural Prodcast Episode 7: Ben Shen
… so I hope somebody’s going to find them useful! DAN: Among many other things, Ben is maybe best known as an … well. One is to do DNA sequencing. So upon sequencing many genomes, now we don’t have to, as in the past, go randomly … and you can do fermentation, which we know how to do since ancient times! We know how to ferment beers or wines or rice …
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Plant Program
… and environmental sustainability. … Plant Flagship Genomes are selected through discussion with the JGI Plant … evenly sample the diversity of the plant kingdom and allow ancestral reconstructions of plant genomes. With the  JGI … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … product, really, in a way. Different formulations. But the breadth of crops, the breadth of countries that we were … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … et al. (2016) A Rickettsiales symbiont of amoebae with ancient features. Environmental Microbiology. 18 (8), …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … terms and conditions in the User Agreement.  These include, among others: indemnification, patent rights, rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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