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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … for your proposal using your proposal's WIP ID (ex. 503582). Click on the correct proposal name on your search … Genome Institute ( https://ror.org/04xm1d337 ) and the Environmental Molecular Sciences Laboratory ( …

… genomics with metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables … plants and microbes, and understanding microbiome interactions. The  insights derived are crucial for … and computational analysis, JGI scientists are able to link metabolic activity with gene expression, providing deeper …

… thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties encoded within those genomes. Our aim … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… ecosystems.  By studying microbial communities and their interactions, the Program aims to unlock the fundamental … research provides insights into microbial diversity and metabolic potential, with implications for energy … most pressing challenges. … Exploration of phylogenomic novelty: Advances in metagenomic sequencing, assembly and …

… algae and plants. These compounds are key to organisms' interactions with their environments and with each other, … is often not fully realized under standard laboratory conditions, with only a small portion of the biosynthetic … of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, and signatures of …

ATAC-seq, and spatial transcriptomics to profile the plant/environmental interface. We are using these methods to … Sai Prahabkar (UC Merced Intern) … Plant / Bacteria / Viral Interactions … Single-cell characterization of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… of Science user facility supported by the Biological and Environmental Research program, the Joint Genome Institute … data, building predictive models for the behaviors and interactions of complex systems, and accelerating … and and those involved in the cycling of elements that mediate the transformation of or are energetically coupled …

… of terrestrial biogeochemical cycling and inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as improving soil health, … in particular to study inter-organismal interactions. Novel approaches are being explored to predict microbial …

… to identify what’s being made. In some cases it might be novel, in some cases it might be– might be a known structure … people doing this but we are very interested in looking at metabolic diversity and new metabolic niches to try to find … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … Adopt-a-Genome has:  11 CSU educators working with the JGI 120 genomes claimed (or about one per student) Seven … genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and other metadata to enable comprehensive …