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With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of … high-performance application that produces high-quality de novo assemblies for very large-scale single genomes, based …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … data, DNA synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of … the first analysis of data produced at the facility, provided this is done in a timely fashion. The publications …

Below is a table of standard product offerings, including a description of the product and deliverables as well as … structural rearrangements, alignment files 384/454 Fungal Transcriptome RNA for expression profiling and genome … smRNA sequencing is no longer supported. For annotation: de novo assembly. For counting: text file of gene counts …

… genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …

Overview The JGI provides sequencing, synthesis, and targeted metabolomics support … ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If … research and sequence-based science.  Projects include de novo generation of genome data, assistance in interpreting …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …

The Plant Program Advisory Committee is chartered to offer advice, guidance and counsel on the effective management and strategic objectives of the plant program. The committee serves as the program's key external advisory panel and advocate of the program's strategy, operations and scientific …

… subgroups: Synthetic Biology Lab : a user science group dedicated to user project design, assembly, and quality control Strain Engineering Group : a … automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … often the things that suffer first when it comes to genome assembly. Some of the common biosynthetic systems – like a …