Search

The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other …

… “Adopt a Genome” is an informal program for faculty to … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of …

DAN UDWARY: You’re listening to the Department of Energy … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … from the GEM catalog (in green) and previously existing reference genomes (in gray). Around the phylogenetic tree, …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … For counting: text file of gene counts (mapped against reference transcriptome or de novo assembly), DGE, alignment …

Sugarcane was the last major crop without a reference quality genome and now crop researchers can work … enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a …

The Metagenome Program uses advanced sequencing technologies to … diversity and metabolic potential, with implications for energy production, environmental sustainability, and … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …

… … DAN: You’re listening to the US. .Department of Energy Joint … at genomes and seeing where the really hard things to sequence were, and wondering what those … what those were … have steered me in that direction a little bit more. Toward mosaic theory. MARC: So how quick, and how much geography …

The JGI’s DNA Synthesis Program supports a wide range of projects, from … bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on … Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of …