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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI …
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Synthetic Biology Lab
… The Synthetic Biology lab is divided into a DNA synthesis production group and a synthetic biology applications group. The DNA synthesis and assembly … technologies including PacBio and Illumina.  The synthetic biology user science group: The applications group is focus …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … in microbial genomics, metagenomics, and computational biology, and to empower them with the knowledge and skills …
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Genome Insider
… The Genome Insider podcast brings listeners into the science … to microbes and viruses. Listen in to explore the data that illuminates biology, and hear how it could power our future. …
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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software includes: … tools, which track samples through the JGI’s Synthetic Biology pipeline as well as provide process automation …
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Publications
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The amphioxus genome illuminates vertebrate origins and cephalochordate biology
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DNA Synthesis Program
… challenges. Through innovative research in synthetic biology, the program enables the design and synthesis of … The program supports cutting-edge research in synthetic biology by synthesizing genes, pathways, and whole … Genome to Enzymes and Pathways focuses on discovering and …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … can be found in Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture microbial and …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support … applications.  The team has three subgroups: Synthetic Biology Lab : a user science group dedicated to user project … engineering — to make them more user accessible Synthetic Biology Informatics Group : a team that develops data …
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Data Ecosystem
… EMSL and the Protein Data Bank enables predictive ecosystem biology. The collaborations present exciting possibilities … KBase is a critical partner in enabling systems biology analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to …
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