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    Data yielded from RIViT-seq increased the number of sigma factor-gene pairs confirmed in Streptomyces coelicolor from 209 to 399. Here, grey arrows denote previously known regulation and red arrows are regulation identified by RIViT-seq; orange nodes mark sigma factors while gray nodes mark other genes. (Otani, H., Mouncey, N.J. Nat Commun 13, 3502 (2022). https://doi.org/10.1038/s41467-022-31191-w)
    Streamlining Regulon Identification in Bacteria
    Regulons are a group of genes that can be turned on or off by the same regulatory protein. RIViT-seq technology could speed up associating transcription factors with their target genes.

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    (PXFuel)
    Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
    In a special issue of the journal Synthetic Biology, JGI scientific users share how they’ve worked with the JGI DNA Synthesis Science Program and what they’ve discovered through their collaborations.

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    A genetic element that generates targeted mutations, called diversity-generating retroelements (DGRs), are found in viruses, as well as bacteria and archaea. Most DGRs found in viruses appear to be in their tail fibers. These tail fibers – signified in the cartoon by the blue virus’ downward pointing ‘arms’— allow the virus to attach to one cell type (red), but not the other (purple). DGRs mutate these ‘arms,’ giving the virus opportunities to switch to different prey, like the purple cell. (Courtesy of Blair Paul)
    A Natural Mechanism Can Turbocharge Viral Evolution
    A team has discovered that diversity generating retroelements (DGRs) are not only widespread, but also surprisingly active. In viruses, DGRs appear to generate diversity quickly, allowing these viruses to target new microbial prey.

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    Photograph of a stream of diatoms beneath Arctic sea ice.
    Polar Phytoplankton Need Zinc to Cope with the Cold
    As part of a long-term collaboration with the JGI Algal Program, researchers studying function and activity of phytoplankton genes in polar waters have found that these algae rely on dissolved zinc to photosynthesize.

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    This data image shows the monthly average sea surface temperature for May 2015. Between 2013 and 2016, a large mass of unusually warm ocean water--nicknamed the blob--dominated the North Pacific, indicated here by red, pink, and yellow colors signifying temperatures as much as three degrees Celsius (five degrees Fahrenheit) higher than average. Data are from the NASA Multi-scale Ultra-high Resolution Sea Surface Temperature (MUR SST) Analysis product. (Courtesy NASA Physical Oceanography Distributed Active Archive Center)
    When “The Blob” Made It Hotter Under the Water
    Researchers tracked the impact of a large-scale heatwave event in the ocean known as “The Blob” as part of an approved proposal through the Community Science Program.

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    A plantation of poplar trees. (David Gilbert)
    Genome Insider podcast: THE Bioenergy Tree
    The US Department of Energy’s favorite tree is poplar. In this episode, hear from ORNL scientists who have uncovered remarkable genetic secrets that bring us closer to making poplar an economical and sustainable source of energy and materials.

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    HPCwire Editor's Choice Award (logo crop) for Best Use of HPC in the Life Sciences
    JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
    The HPCwire Editors Choice Award for Best Use of HPC in Life Sciences went to the Berkeley Lab team comprised of JGI and ExaBiome Project team, supported by the DOE Exascale Computing Project for MetaHipMer, an end-to-end genome assembler that supports “an unprecedented assembly of environmental microbiomes.”

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    With a common set of "baseline metadata," JGI users can more easily access public data sets. (Steve Wilson)
    A User-Centered Approach to Accessing JGI Data
    Reflecting a structural shift in data access, the JGI Data Portal offers a way for users to more easily access public data sets through a common set of metadata.

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    Phytozome portal collage
    A More Intuitive Phytozome Interface
    Phytozome v13 now hosts upwards of 250 plant genomes and provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces they have come to rely on, with a more intuitive interface.

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    screencap from Amundson and Wilkins subsurface microbiome video
    Digging into Microbial Ecosystems Deep Underground
    JGI users and microbiome researchers at Colorado State University have many questions about the microbial communities deep underground, including the role viral infection may play in other natural ecosystems.

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    Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical output due to growth and viability constraints. Cell extracts provide an alternative format for chemical synthesis in the absence of cell growth by isolating the soluble components of lysed cells. By separating the production of enzymes (during growth) and the biochemical production process (in cell-free reactions), this framework enables biosynthesis of diverse chemical products at volumetric productivities greater than the source strains. (Blake Rasor)
    Boosting Small Molecule Production in Super “Soup”
    Researchers supported through the Emerging Technologies Opportunity Program describe a two-pronged approach that starts with engineered yeast cells but then moves out of the cell structure into a cell-free system.

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    These bright green spots are fluorescently labelled bacteria from soil collected from the surface of plant roots. For reference, the scale bar at bottom right is 10 micrometers long. (Rhona Stuart)
    A Powerful Technique to Study Microbes, Now Easier
    In JGI's Genome Insider podcast: LLNL biologist Jennifer Pett-Ridge collaborated with JGI scientists through the Emerging Technologies Opportunity Program to semi-automate experiments that measure microbial activity in soil.

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    A view of the mangroves from which the giant bacteria were sampled in Guadeloupe. (Hugo Bret)
    Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
    Harnessing JGI and Berkeley Lab resources, researchers characterized a giant - 5,000 times bigger than most bacteria - filamentous bacterium discovered in the Caribbean mangroves.

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    In their approved proposal, Frederick Colwell of Oregon State University and colleagues are interested in the microbial communities that live on Alaska’s glacially dominated Copper River Delta. They’re looking at how the microbes in these high latitude wetlands, such as the Copper River Delta wetland pond shown here, cycle carbon. (Courtesy of Rick Colwell)
    Monitoring Inter-Organism Interactions Within Ecosystems
    Many of the proposals approved through JGI's annual Community Science Program call focus on harnessing genomics to developing sustainable resources for biofuels and bioproducts.

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    Coloring the water, the algae Phaeocystis blooms off the side of the sampling vessel, Polarstern, in the temperate region of the North Atlantic. (Katrin Schmidt)
    Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
    As warm-adapted microbes edge polewards, they’d oust resident tiny algae. It's a trend that threatens to destabilize the delicate marine food web and change the oceans as we know them.

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News & Publications
Home › News & Publications › Publications › 2021 Publications

2021 Publications

Acinas, S. G. et al. (2021) Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities. Communications Biology 4(1). 10.1038/s42003-021-02112-2
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Ahmed, M. A. et al. (2021) Metagenomes, metatranscriptomes, and metagenome-assembled genomes from chesapeake and Delaware bay (USA) water samples. Microbiology Resource Announcements 10(21). 10.1128/MRA.00262-21
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Albanese, D. et al. (2021) Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages. Microbiome 9(1), 15. 10.1186/s40168-021-01021-0
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Altae-Tran, Han et al. (2021) The widespread IS200/605 transposon family encodes diverse programmable RNA-guided endonucleases. Science 374(6563), 57-65. 10.1126/science.abj6856
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Altamia, M. A. et al. (2021) Wteredinibacter haidensis sp. Nov., teredinibacter purpureus sp. nov. and teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc bankia setacea (bivalvia: Teredinidae) and emended description of the genus teredinibacter. International Journal of Systematic and Evolutionary Microbiology 71(2), 1-11. 10.1099/ijsem.0.004627
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Andreani, Julien et al. (2021) Morphological and Genomic Features of the New Klosneuvirinae Isolate Fadolivirus IHUMI-VV54. Frontiers in Microbiology 12, 719703. 10.3389/fmicb.2021.719703
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Andreopoulos, William B. et al. (2021) Deeplasmid: deep learning accurately separates plasmids from bacterial chromosomes. Nucleic Acids Research , gkab1115. 10.1093/nar/gkab1115
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Ankita Kothari et al. (2021) Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance. mSystems 6(3), e00537-21. 10.1128/mSystems.00537-21
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Arellano-Saab, A. et al. (2021) Three mutations repurpose a plant karrikin receptor to a strigolactone receptor. Proceedings of the National Academy of Sciences of the United States of America 118(30). 10.1073/pnas.2103175118
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Avila-Magaña, Viridiana et al. (2021) Elucidating gene expression adaptation of phylogenetically divergent coral holobionts under heat stress. Nature Communications 12. 10.1038/s41467-021-25950-4
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Bachy, C. et al. (2021) Viruses infecting a warm water picoeukaryote shed light on spatial co-occurrence dynamics of marine viruses and their hosts. ISME Journal . 10.1038/s41396-021-00989-9
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Banerjee, Deepanwita et al. (2021) Genomics Characterization of an Engineered Corynebacterium glutamicum in Bioreactor Cultivation Under Ionic Liquid Stress. Frontiers in Bioengineering and Biotechnology 9, 766674. 10.3389/fbioe.2021.766674
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Bauer, S. et al. (2021) The leucine-rich repeats in allelic barley MLA immune receptors define specificity towards sequence-unrelated powdery mildew avirulence effectors with a predicted common RNase-like fold. Plos Pathogens 17(2), 36. 10.1371/journal.ppat.1009223
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Baumgart, Leo A. et al. (2021) Persistence and plasticity in bacterial gene regulation. Nature Methods 18(12), 1499-1505. 10.1038/s41592-021-01312-2
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Ben Francis, T. et al. (2021) Changing expression patterns of TonB-dependent transporters suggest shifts in polysaccharide consumption over the course of a spring phytoplankton bloom. Isme Journal , 15. 10.1038/s41396-021-00928-8
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Berg, M. et al. (2021) Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions. Isme Journal , 16. 10.1038/s41396-020-00870-1
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Berg, M. et al. (2021) Extreme dimensions — how big (or small) can tailed phages be?. Nature Reviews Microbiology 19(7), 407. 10.1038/s41579-021-00574-z
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Boeuf, D. et al. (2021) Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage. Microbiome 9(1). 10.1186/s40168-021-01119-5
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Bolduc, Benjamin et al. (2021) iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology. ISME Communications 1(1), 77. 10.1038/s43705-021-00083-3
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Bomble, Yannick J. et al. (2021) Editorial: Cell Free Biocatalysis for the Production of Bioproducts. Frontiers in Energy Research 9, 781552. 10.3389/fenrg.2021.781552
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Bornowski, N. et al. (2021) Genomic variation within the maize stiff-stalk heterotic germplasm pool. Plant Genome . 10.1002/tpg2.20114
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Bowers, Robert M. et al. (2021) Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution. The ISME Journal: Multidisciplinary Journal of Microbial Ecology , 1-11. 10.1038/s41396-021-01178-4
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Bowman, E. K. et al. (2021) Sorting for secreted molecule production using a biosensor-in-microdroplet approach. Proceedings of the National Academy of Sciences of the United States of America 118(36). 10.1073/pnas.2106818118
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Bowman, J. S. et al. (2021) Whole Community Metatranscriptomes and Lipidomes Reveal Diverse Responses Among Antarctic Phytoplankton to Changing Ice Conditions. Frontiers in Marine Science 8, 14. 10.3389/fmars.2021.593566
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Bowsher, A. W. et al. (2021) Seasonal dynamics of core fungi in the switchgrass phyllosphere, and co-occurrence with leaf bacteria. Phytobiomes Journal 5(1), 60-68. 10.1094/PBIOMES-07-20-0051-R
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Brisson, V. et al. (2021) Phosphate Availability Modulates Root Exudate Composition and Rhizosphere Microbial Community in a Teosinte and a Modern Maize Cultivar. Phytobiomes Journal . 10.1094/pbiomes-06-21-0041-r
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Brown, I. et al. (2021) High-quality draft genome sequence of the siderophilic and thermophilic leptolyngbyaceae cyanobacterium JSC-12. Microbiology Resource Announcements 10(25). 10.1128/MRA.00495-21
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Brown, Jennifer L. et al. (2021) Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates. Biotechnology for Biofuels 14(1), 234. 10.1186/s13068-021-02083-w
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Bruckbauer, S. T. et al. (2021) Experimental evolution of extremophile resistance to ionizing radiation. Trends in Genetics . 10.1016/j.tig.2021.04.011
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Calhoun, S. et al. (2021) A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology. Communications Biology 4(1), 15. 10.1038/s42003-021-01859-y
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Call, L. et al. (2021) Illuminating the Virosphere Through Global Metagenomics. Annual Review of Biomedical Data Science 4(1), 369-391. 10.1146/annurev-biodatasci-012221-095114
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Carey, S. B. et al. (2021) Gene-rich UV sex chromosomes harbor conserved regulators of sexual development. Science Advances 7(27). 10.1126/sciadv.abh2488
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Carper, D. L. et al. (2021) Cultivating the bacterial microbiota of populus roots. mSystems 6(3). 10.1128/mSystems.01306-20
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Carrell, Alyssa A. et al. (2021) Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism. The ISME Journal: Multidisciplinary Journal of Microbial Ecology , 1-12. 10.1038/s41396-021-01136-0
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Chai, Y. N. et al. (2021) High-resolution phenotyping of sorghum genotypic and phenotypic responses to low nitrogen and synthetic microbial communities. Plant Cell and Environment 44(5), 1611-1626. 10.1111/pce.14004
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Chang, Y. et al. (2021) Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi. Scientific Reports 11(1), 12. 10.1038/s41598-021-82607-4
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Chen, I. A. et al. (2021) The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities. Nucleic Acids Res 49(D1), D751-D763. 10.1093/nar/gkaa939
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Chen, Y. et al. (2021) Prokaryotic viruses impact functional microorganisms in nutrient removal and carbon cycle in wastewater treatment plants. Nature Communications 12(1). 10.1038/s41467-021-25678-1
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Chiniquy, D. et al. (2021) Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes. Frontiers in Microbiology 12, 17. 10.3389/fmicb.2021.598180
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Chou, Alexander et al. (2021) An orthogonal metabolic framework for one-carbon utilization. Nature Metabolism 3(10), 1385-1399. 10.1038/s42255-021-00453-0
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Chroumpi, T. et al. (2021) Revisiting a 'simple' fungal metabolic pathway reveals redundancy, complexity and diversity. Microbial Biotechnology , 13. 10.1111/1751-7915.13790
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Chuckran, P. F. et al. (2021) Rapid response of nitrogen cycling gene transcription to labile carbon amendments in a soil microbial community. mSystems 6(3). 10.1128/mSystems.00161-21
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Ciobanu, Doina et al. (2021) A single-cell genomics pipeline for environmental microbial eukaryotes. iScience 24(4), 102290. 10.1016/j.isci.2021.102290
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Clum, A. et al. (2021) DOE JGI metagenome workflow. mSystems 6(3). 10.1128/MSYSTEMS.00804-20
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Coclet, C. et al. (2021) Global overview and major challenges of host prediction methods for uncultivated phages. Current Opinion in Virology 49, 117-126. 10.1016/j.coviro.2021.05.003
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Cohen, N. R. et al. (2021) Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean. Nature Microbiology 6(2), 173-+. 10.1038/s41564-020-00814-7
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Cole, B. et al. (2021) Plant single-cell solutions for energy and the environment. Communications Biology 4(1). 10.1038/s42003-021-02477-4
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Cole, B. J. et al. (2021) Different threats, same response. Nature Plants 7(5), 544-545. 10.1038/s41477-021-00915-z
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Couceiro, J. F. et al. (2021) The Roseibium album (Labrenzia alba) Genome Possesses Multiple Symbiosis Factors Possibly Underpinning Host-Microbe Relationships in the Marine Benthos. Microbiology Resource Announcements 10(34). 10.1128/MRA.00320-21
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Crowell, Chase R et al. (2021) The Melampsora americana population on Salix purpurea in the Great Lakes region is highly diverse with a contributory influence of clonality. Phytopathology . 10.1094/phyto-05-21-0201-r
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Danko, D. et al. (2021) A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell 184(13), 3376-3393.e17. 10.1016/j.cell.2021.05.002
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Dauphin, B. et al. (2021) Cryptic genetic structure and copy-number variation in the ubiquitous forest symbiotic fungus Cenococcum geophilum. Environmental Microbiology . 10.1111/1462-2920.15752
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De Anda, V. et al. (2021) Brockarchaeota, a novel archaeal phylum with unique and versatile carbon cycling pathways. Nature Communications 12(1). 10.1038/s41467-021-22736-6
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de Mesquita, Clifton P. Bueno et al. (2021) Methanogenesis and Salt Tolerance Genes of a Novel Halophilic Methanosarcinaceae Metagenome-Assembled Genome from a Former Solar Saltern. Genes 12(10), 1609. 10.3390/genes12101609
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del Cerro, C. et al. (2021) Intracellular pathways for lignin catabolism in white-rot fungi. Proceedings of the National Academy of Sciences of the United States of America 118(9), 10. 10.1073/pnas.2017381118
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Destan, Ebru et al. (2021) Structural insights into bifunctional thaumarchaeal crotonyl-CoA hydratase and 3-hydroxypropionyl-CoA dehydratase from Nitrosopumilus maritimus. Scientific Reports 11(1), 22849. 10.1038/s41598-021-02180-8
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Dierschke, Tom et al. (2021) Gamete expression of TALE class HD genes activates the diploid sporophyte program in Marchantia polymorpha. eLife 10, e57088. 10.7554/elife.57088
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DiMario, R. J. et al. (2021) Kinetic variation in grass phosphoenolpyruvate carboxylases provides opportunity to enhance C-4 photosynthetic efficiency. Plant Journal 105(6), 1677-1688. 10.1111/tpj.15141
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Ding, Y. et al. (2021) Getting back to the grass roots: harnessing specialized metabolites for improved crop stress resilience. Current Opinion in Biotechnology 70, 174-186. 10.1016/j.copbio.2021.05.010
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Dutilh, Bas E. et al. (2021) Perspective on taxonomic classification of uncultivated viruses. Current Opinion in Virology 51, 207-215. 10.1016/j.coviro.2021.10.011
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Dykes, G. E. et al. (2021) Silicon-rich soil amendments impact microbial community composition and the composition of arsM bearing microbes. Plant and Soil . 10.1007/s11104-021-05103-8
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Dykes, G. E. et al. (2021) 16S rRNA gene amplicon sequencing data from flooded rice paddy mesocosms treated with different silicon-rich soil amendments. Microbiology Resource Announcements 10(27). 10.1128/MRA.00178-21
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Eng, T. et al. (2021) Engineering Pseudomonas putida for efficient aromatic conversion to bioproduct using high throughput screening in a bioreactor. Metabolic Engineering 66, 229-238. 10.1016/j.ymben.2021.04.015
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Erlandson, Sonya R. et al. (2021) Transcriptional acclimation and spatial differentiation characterize drought response by the ectomycorrhizal fungus Suillus pungens. New Phytologist . 10.1111/nph.17816
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Ettinger, C. L. et al. (2021) Global Diversity and Biogeography of the Zostera marina Mycobiome. Applied and Environmental Microbiology 87(12), 1-19. 10.1128/AEM.02795-20
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Fackler, N. et al. (2021) Stepping on the Gas to a Circular Economy: Accelerating Development of Carbon-Negative Chemical Production from Gas Fermentation. Annual Review of Chemical and Biomolecular Engineering 12, 439-470. 10.1146/annurev-chembioeng-120120-021122
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Fackler, N. et al. (2021) Transcriptional control of Clostridium autoethanogenum using CRISPRi. Synthetic Biology 6(1). 10.1093/synbio/ysab008
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Felczak, M. M. et al. (2021) Zymomonas diversity and potential for biofuel production. Biotechnology for Biofuels 14(1). 10.1186/s13068-021-01958-2
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Fernandes-Martins, Maria C. et al. (2021) Ecological Dichotomies Arise in Microbial Communities Due to Mixing of Deep Hydrothermal Waters and Atmospheric Gas in a Circumneutral Hot Spring. Applied and Environmental Microbiology 87(23), e01598-21. 10.1128/aem.01598-21
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Gabriel, Raphael et al. (2021) The F-box protein gene exo-1 is a target for reverse engineering enzyme hypersecretion in filamentous fungi. Proceedings of the National Academy of Sciences 118(26), e2025689118. 10.1073/pnas.2025689118
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Gallaher, S. D. et al. (2021) Widespread polycistronic gene expression in green algae. Proceedings of the National Academy of Sciences of the United States of America 118(7), 10. 10.1073/pnas.2017714118
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Gao, C. et al. (2021) Coral mucus rapidly induces chemokinesis and genome-wide transcriptional shifts toward early pathogenesis in a bacterial coral pathogen. ISME Journal . 10.1038/s41396-021-01024-7
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Gavrilov, S. N. et al. (2021) Novel Extracellular Electron Transfer Channels in a Gram-Positive Thermophilic Bacterium. Frontiers in Microbiology 11. 10.3389/fmicb.2020.597818
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Goren, E. et al. (2021) Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization. BMC Bioinformatics 22(1). 10.1186/s12859-021-04232-2
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Grigoriev, I. V. et al. (2021) PhycoCosm, a comparative algal genomics resource. Nucleic Acids Res 49(D1), D1004-D1011. 10.1093/nar/gkaa898
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Guerreiro, Marco Alexandre et al. (2021) Draft genome sequences of strains CBS6241 and CBS6242 of the basidiomycetous yeast Filobasidium floriforme. G3: Genes, Genomes, Genetics , jkab398. 10.1093/g3journal/jkab398
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Guo, J. R. et al. (2021) VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses. Microbiome 9(1), 13. 10.1186/s40168-020-00990-y
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Hage, H. et al. (2021) Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay. Environmental Microbiology , 17. 10.1111/1462-2920.15423
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Hagen, L. H. et al. (2021) Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber. Isme Journal 15(2), 421-434. 10.1038/s41396-020-00769-x
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Hagestad, O. C. et al. (2021) Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation. IMA Fungus 12(1). 10.1186/s43008-021-00072-0
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Hao, Y. et al. (2021) The contributions from the progenitor genomes of the mesopolyploid brassiceae are evolutionarily distinct but functionally compatible. Genome Research 31(5), 799-810. 10.1101/GR.270033.120
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Harris, C. R. et al. (2021) Draft genome sequence of Bordetella sp. strain FB-8, isolated from a former uranium mining area in Germany. Microbiology Resource Announcements 10(14). 10.1128/MRA.01035-19
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Hawkins, Charles et al. (2021) Plant Metabolic Network 15: A resource of genome-wide metabolism databases for 126 plants and algae. Journal of Integrative Plant Biology n/a(n/a). https://doi.org/10.1111/jipb.13163
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Healey, A. L. et al. (2021) Pests, diseases, and aridity have shaped the genome of Corymbia citriodora. Communications Biology 4(1). 10.1038/s42003-021-02009-0
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Heeger, Felix et al. (2021) Evidence for Lignocellulose-Decomposing Enzymes in the Genome and Transcriptome of the Aquatic Hyphomycete Clavariopsis aquatica. Journal of Fungi 7(10), 854. 10.3390/jof7100854
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Hempel, Priscilla P. et al. (2021) RNA-Seq Reveals that Light and Darkness Are Different Stimuli in Freshwater Heterotrophic Actinobacteria. Frontiers in Microbiology 12, 739005. 10.3389/fmicb.2021.739005
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Henningsen, E. C. et al. (2021) Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat. Frontiers in Plant Science 12. 10.3389/fpls.2021.657796
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Heyduk, K. et al. (2021) Hybridization History and Repetitive Element Content in the Genome of a Homoploid Hybrid, Yucca gloriosa (Asparagaceae). Frontiers in Plant Science 11, 16. 10.3389/fpls.2020.573767
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Hu, D. et al. (2021) Counting mRNA Copies in Intact Bacterial Cells by Fluctuation Localization Imaging-Based Fluorescence In Situ Hybridization (fliFISH). Methods in Molecular Biology 2246, 237-247. 10.1007/978-1-0716-1115-9_15
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Huberman, L. B. et al. (2021) Aspects of the Neurospora crassa Sulfur Starvation Response Are Revealed by Transcriptional Profiling and DNA Affinity Purification Sequencing. mSphere 6(5), e00564-21. 10.1128/mSphere.00564-21
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Huberman, Lori B. et al. (2021) DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus. Proceedings of the National Academy of Sciences 118(13), e2009501118. 10.1073/pnas.2009501118
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Hurley, A. et al. (2021) Tiny Earth: A Big Idea for STEM Education and Antibiotic Discovery. Mbio 12(1), 7. 10.1128/mBio.03432-20
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Hyden, B. et al. (2021) Integrative genomics reveals paths to sex dimorphism in Salix purpurea L. Horticulture Research 8(1). 10.1038/s41438-021-00606-y
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Iha, C. et al. (2021) Genomic adaptations to an endolithic lifestyle in the coral-associated alga Ostreobium. Current Biology 31(7), 1393-1402.e5. 10.1016/j.cub.2021.01.018
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