(2021) Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities.
Communications Biology 4(1).
10.1038/s42003-021-02112-2
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(2021) Metagenomes, metatranscriptomes, and metagenome-assembled genomes from chesapeake and Delaware bay (USA) water samples.
Microbiology Resource Announcements 10(21).
10.1128/MRA.00262-21
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(2021) Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages.
Microbiome 9(1), 15.
10.1186/s40168-021-01021-0
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(2021) The widespread IS200/605 transposon family encodes diverse programmable RNA-guided endonucleases.
Science 374(6563), 57-65.
10.1126/science.abj6856
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(2021) Wteredinibacter haidensis sp. Nov., teredinibacter purpureus sp. nov. and teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc bankia setacea (bivalvia: Teredinidae) and emended description of the genus teredinibacter.
International Journal of Systematic and Evolutionary Microbiology 71(2), 1-11.
10.1099/ijsem.0.004627
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(2021) Morphological and Genomic Features of the New Klosneuvirinae Isolate Fadolivirus IHUMI-VV54.
Frontiers in Microbiology 12, 719703.
10.3389/fmicb.2021.719703
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(2021) Deeplasmid: deep learning accurately separates plasmids from bacterial chromosomes.
Nucleic Acids Research , gkab1115.
10.1093/nar/gkab1115
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(2021) Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance.
mSystems 6(3), e00537-21.
10.1128/mSystems.00537-21
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(2021) Three mutations repurpose a plant karrikin receptor to a strigolactone receptor.
Proceedings of the National Academy of Sciences of the United States of America 118(30).
10.1073/pnas.2103175118
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(2021) Elucidating gene expression adaptation of phylogenetically divergent coral holobionts under heat stress.
Nature Communications 12.
10.1038/s41467-021-25950-4
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(2021) Viruses infecting a warm water picoeukaryote shed light on spatial co-occurrence dynamics of marine viruses and their hosts.
ISME Journal .
10.1038/s41396-021-00989-9
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(2021) Genomics Characterization of an Engineered Corynebacterium glutamicum in Bioreactor Cultivation Under Ionic Liquid Stress.
Frontiers in Bioengineering and Biotechnology 9, 766674.
10.3389/fbioe.2021.766674
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(2021) The leucine-rich repeats in allelic barley MLA immune receptors define specificity towards sequence-unrelated powdery mildew avirulence effectors with a predicted common RNase-like fold.
Plos Pathogens 17(2), 36.
10.1371/journal.ppat.1009223
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(2021) Persistence and plasticity in bacterial gene regulation.
Nature Methods 18(12), 1499-1505.
10.1038/s41592-021-01312-2
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(2021) Changing expression patterns of TonB-dependent transporters suggest shifts in polysaccharide consumption over the course of a spring phytoplankton bloom.
Isme Journal , 15.
10.1038/s41396-021-00928-8
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(2021) Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions.
Isme Journal , 16.
10.1038/s41396-020-00870-1
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(2021) Extreme dimensions — how big (or small) can tailed phages be?.
Nature Reviews Microbiology 19(7), 407.
10.1038/s41579-021-00574-z
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(2021) Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage.
Microbiome 9(1).
10.1186/s40168-021-01119-5
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(2021) iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology.
ISME Communications 1(1), 77.
10.1038/s43705-021-00083-3
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(2021) Editorial: Cell Free Biocatalysis for the Production of Bioproducts.
Frontiers in Energy Research 9, 781552.
10.3389/fenrg.2021.781552
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(2021) Genomic variation within the maize stiff-stalk heterotic germplasm pool.
Plant Genome .
10.1002/tpg2.20114
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(2021) Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution.
The ISME Journal: Multidisciplinary Journal of Microbial Ecology , 1-11.
10.1038/s41396-021-01178-4
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(2021) Sorting for secreted molecule production using a biosensor-in-microdroplet approach.
Proceedings of the National Academy of Sciences of the United States of America 118(36).
10.1073/pnas.2106818118
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(2021) Whole Community Metatranscriptomes and Lipidomes Reveal Diverse Responses Among Antarctic Phytoplankton to Changing Ice Conditions.
Frontiers in Marine Science 8, 14.
10.3389/fmars.2021.593566
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(2021) Seasonal dynamics of core fungi in the switchgrass phyllosphere, and co-occurrence with leaf bacteria.
Phytobiomes Journal 5(1), 60-68.
10.1094/PBIOMES-07-20-0051-R
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(2021) Phosphate Availability Modulates Root Exudate Composition and Rhizosphere Microbial Community in a Teosinte and a Modern Maize Cultivar.
Phytobiomes Journal .
10.1094/pbiomes-06-21-0041-r
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(2021) High-quality draft genome sequence of the siderophilic and thermophilic leptolyngbyaceae cyanobacterium JSC-12.
Microbiology Resource Announcements 10(25).
10.1128/MRA.00495-21
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(2021) Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates.
Biotechnology for Biofuels 14(1), 234.
10.1186/s13068-021-02083-w
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(2021) Experimental evolution of extremophile resistance to ionizing radiation.
Trends in Genetics .
10.1016/j.tig.2021.04.011
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(2021) A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology.
Communications Biology 4(1), 15.
10.1038/s42003-021-01859-y
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(2021) Illuminating the Virosphere Through Global Metagenomics.
Annual Review of Biomedical Data Science 4(1), 369-391.
10.1146/annurev-biodatasci-012221-095114
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(2021) Gene-rich UV sex chromosomes harbor conserved regulators of sexual development.
Science Advances 7(27).
10.1126/sciadv.abh2488
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(2021) Cultivating the bacterial microbiota of populus roots.
mSystems 6(3).
10.1128/mSystems.01306-20
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(2021) Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism.
The ISME Journal: Multidisciplinary Journal of Microbial Ecology , 1-12.
10.1038/s41396-021-01136-0
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(2021) High-resolution phenotyping of sorghum genotypic and phenotypic responses to low nitrogen and synthetic microbial communities.
Plant Cell and Environment 44(5), 1611-1626.
10.1111/pce.14004
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(2021) Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi.
Scientific Reports 11(1), 12.
10.1038/s41598-021-82607-4
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(2021) The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities.
Nucleic Acids Res 49(D1), D751-D763.
10.1093/nar/gkaa939
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(2021) Prokaryotic viruses impact functional microorganisms in nutrient removal and carbon cycle in wastewater treatment plants.
Nature Communications 12(1).
10.1038/s41467-021-25678-1
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(2021) Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes.
Frontiers in Microbiology 12, 17.
10.3389/fmicb.2021.598180
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(2021) An orthogonal metabolic framework for one-carbon utilization.
Nature Metabolism 3(10), 1385-1399.
10.1038/s42255-021-00453-0
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(2021) Revisiting a 'simple' fungal metabolic pathway reveals redundancy, complexity and diversity.
Microbial Biotechnology , 13.
10.1111/1751-7915.13790
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(2021) Rapid response of nitrogen cycling gene transcription to labile carbon amendments in a soil microbial community.
mSystems 6(3).
10.1128/mSystems.00161-21
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(2021) A single-cell genomics pipeline for environmental microbial eukaryotes.
iScience 24(4), 102290.
10.1016/j.isci.2021.102290
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(2021) DOE JGI metagenome workflow.
mSystems 6(3).
10.1128/MSYSTEMS.00804-20
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(2021) Global overview and major challenges of host prediction methods for uncultivated phages.
Current Opinion in Virology 49, 117-126.
10.1016/j.coviro.2021.05.003
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(2021) Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean.
Nature Microbiology 6(2), 173-+.
10.1038/s41564-020-00814-7
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(2021) Plant single-cell solutions for energy and the environment.
Communications Biology 4(1).
10.1038/s42003-021-02477-4
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(2021) Different threats, same response.
Nature Plants 7(5), 544-545.
10.1038/s41477-021-00915-z
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(2021) The Roseibium album (Labrenzia alba) Genome Possesses Multiple Symbiosis Factors Possibly Underpinning Host-Microbe Relationships in the Marine Benthos.
Microbiology Resource Announcements 10(34).
10.1128/MRA.00320-21
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(2021) The Melampsora americana population on Salix purpurea in the Great Lakes region is highly diverse with a contributory influence of clonality.
Phytopathology .
10.1094/phyto-05-21-0201-r
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(2021) A global metagenomic map of urban microbiomes and antimicrobial resistance.
Cell 184(13), 3376-3393.e17.
10.1016/j.cell.2021.05.002
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(2021) Cryptic genetic structure and copy-number variation in the ubiquitous forest symbiotic fungus Cenococcum geophilum.
Environmental Microbiology .
10.1111/1462-2920.15752
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(2021) Brockarchaeota, a novel archaeal phylum with unique and versatile carbon cycling pathways.
Nature Communications 12(1).
10.1038/s41467-021-22736-6
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(2021) Methanogenesis and Salt Tolerance Genes of a Novel Halophilic Methanosarcinaceae Metagenome-Assembled Genome from a Former Solar Saltern.
Genes 12(10), 1609.
10.3390/genes12101609
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(2021) Intracellular pathways for lignin catabolism in white-rot fungi.
Proceedings of the National Academy of Sciences of the United States of America 118(9), 10.
10.1073/pnas.2017381118
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(2021) Structural insights into bifunctional thaumarchaeal crotonyl-CoA hydratase and 3-hydroxypropionyl-CoA dehydratase from Nitrosopumilus maritimus.
Scientific Reports 11(1), 22849.
10.1038/s41598-021-02180-8
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(2021) Gamete expression of TALE class HD genes activates the diploid sporophyte program in Marchantia polymorpha.
eLife 10, e57088.
10.7554/elife.57088
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(2021) Kinetic variation in grass phosphoenolpyruvate carboxylases provides opportunity to enhance C-4 photosynthetic efficiency.
Plant Journal 105(6), 1677-1688.
10.1111/tpj.15141
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(2021) Getting back to the grass roots: harnessing specialized metabolites for improved crop stress resilience.
Current Opinion in Biotechnology 70, 174-186.
10.1016/j.copbio.2021.05.010
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(2021) Perspective on taxonomic classification of uncultivated viruses.
Current Opinion in Virology 51, 207-215.
10.1016/j.coviro.2021.10.011
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(2021) Silicon-rich soil amendments impact microbial community composition and the composition of arsM bearing microbes.
Plant and Soil .
10.1007/s11104-021-05103-8
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(2021) 16S rRNA gene amplicon sequencing data from flooded rice paddy mesocosms treated with different silicon-rich soil amendments.
Microbiology Resource Announcements 10(27).
10.1128/MRA.00178-21
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(2021) Engineering Pseudomonas putida for efficient aromatic conversion to bioproduct using high throughput screening in a bioreactor.
Metabolic Engineering 66, 229-238.
10.1016/j.ymben.2021.04.015
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(2021) Transcriptional acclimation and spatial differentiation characterize drought response by the ectomycorrhizal fungus Suillus pungens.
New Phytologist .
10.1111/nph.17816
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(2021) Global Diversity and Biogeography of the Zostera marina Mycobiome.
Applied and Environmental Microbiology 87(12), 1-19.
10.1128/AEM.02795-20
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(2021) Stepping on the Gas to a Circular Economy: Accelerating Development of Carbon-Negative Chemical Production from Gas Fermentation.
Annual Review of Chemical and Biomolecular Engineering 12, 439-470.
10.1146/annurev-chembioeng-120120-021122
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(2021) Transcriptional control of Clostridium autoethanogenum using CRISPRi.
Synthetic Biology 6(1).
10.1093/synbio/ysab008
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(2021) Zymomonas diversity and potential for biofuel production.
Biotechnology for Biofuels 14(1).
10.1186/s13068-021-01958-2
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(2021) Ecological Dichotomies Arise in Microbial Communities Due to Mixing of Deep Hydrothermal Waters and Atmospheric Gas in a Circumneutral Hot Spring.
Applied and Environmental Microbiology 87(23), e01598-21.
10.1128/aem.01598-21
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(2021) The F-box protein gene exo-1 is a target for reverse engineering enzyme hypersecretion in filamentous fungi.
Proceedings of the National Academy of Sciences 118(26), e2025689118.
10.1073/pnas.2025689118
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(2021) Widespread polycistronic gene expression in green algae.
Proceedings of the National Academy of Sciences of the United States of America 118(7), 10.
10.1073/pnas.2017714118
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(2021) Coral mucus rapidly induces chemokinesis and genome-wide transcriptional shifts toward early pathogenesis in a bacterial coral pathogen.
ISME Journal .
10.1038/s41396-021-01024-7
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(2021) Novel Extracellular Electron Transfer Channels in a Gram-Positive Thermophilic Bacterium.
Frontiers in Microbiology 11.
10.3389/fmicb.2020.597818
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(2021) Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization.
BMC Bioinformatics 22(1).
10.1186/s12859-021-04232-2
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(2021) PhycoCosm, a comparative algal genomics resource.
Nucleic Acids Res 49(D1), D1004-D1011.
10.1093/nar/gkaa898
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(2021) Draft genome sequences of strains CBS6241 and CBS6242 of the basidiomycetous yeast Filobasidium floriforme.
G3: Genes, Genomes, Genetics , jkab398.
10.1093/g3journal/jkab398
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(2021) VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses.
Microbiome 9(1), 13.
10.1186/s40168-020-00990-y
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(2021) Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay.
Environmental Microbiology , 17.
10.1111/1462-2920.15423
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(2021) Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber.
Isme Journal 15(2), 421-434.
10.1038/s41396-020-00769-x
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(2021) Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation.
IMA Fungus 12(1).
10.1186/s43008-021-00072-0
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(2021) The contributions from the progenitor genomes of the mesopolyploid brassiceae are evolutionarily distinct but functionally compatible.
Genome Research 31(5), 799-810.
10.1101/GR.270033.120
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(2021) Draft genome sequence of Bordetella sp. strain FB-8, isolated from a former uranium mining area in Germany.
Microbiology Resource Announcements 10(14).
10.1128/MRA.01035-19
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(2021) Plant Metabolic Network 15: A resource of genome-wide metabolism databases for 126 plants and algae.
Journal of Integrative Plant Biology n/a(n/a).
https://doi.org/10.1111/jipb.13163
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(2021) Pests, diseases, and aridity have shaped the genome of Corymbia citriodora.
Communications Biology 4(1).
10.1038/s42003-021-02009-0
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(2021) Evidence for Lignocellulose-Decomposing Enzymes in the Genome and Transcriptome of the Aquatic Hyphomycete Clavariopsis aquatica.
Journal of Fungi 7(10), 854.
10.3390/jof7100854
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(2021) RNA-Seq Reveals that Light and Darkness Are Different Stimuli in Freshwater Heterotrophic Actinobacteria.
Frontiers in Microbiology 12, 739005.
10.3389/fmicb.2021.739005
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(2021) Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat.
Frontiers in Plant Science 12.
10.3389/fpls.2021.657796
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(2021) Hybridization History and Repetitive Element Content in the Genome of a Homoploid Hybrid, Yucca gloriosa (Asparagaceae).
Frontiers in Plant Science 11, 16.
10.3389/fpls.2020.573767
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(2021) Counting mRNA Copies in Intact Bacterial Cells by Fluctuation Localization Imaging-Based Fluorescence In Situ Hybridization (fliFISH).
Methods in Molecular Biology 2246, 237-247.
10.1007/978-1-0716-1115-9_15
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(2021) Aspects of the Neurospora crassa Sulfur Starvation Response Are Revealed by Transcriptional Profiling and DNA Affinity Purification Sequencing.
mSphere 6(5), e00564-21.
10.1128/mSphere.00564-21
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(2021) DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus.
Proceedings of the National Academy of Sciences 118(13), e2009501118.
10.1073/pnas.2009501118
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(2021) Tiny Earth: A Big Idea for STEM Education and Antibiotic Discovery.
Mbio 12(1), 7.
10.1128/mBio.03432-20
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(2021) Integrative genomics reveals paths to sex dimorphism in Salix purpurea L.
Horticulture Research 8(1).
10.1038/s41438-021-00606-y
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(2021) Genomic adaptations to an endolithic lifestyle in the coral-associated alga Ostreobium.
Current Biology 31(7), 1393-1402.e5.
10.1016/j.cub.2021.01.018
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(2021) Omics analyses and biochemical study of Phlebiopsis gigantea elucidate its degradation strategy of wood extractives.
Scientific Reports 11(1).
10.1038/s41598-021-91756-5
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(2021) Microfabrication of a chamber for high-resolution, in situ imaging of the whole root for plant–microbe interactions.
International Journal of Molecular Sciences 22(15).
10.3390/ijms22157880
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(2021) Vision, challenges and opportunities for a plant cell atlas.
eLife 10.
10.7554/eLife.66877
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(2021) Draft genome sequences of switchgrass diazotrophs.
Microbiology Resource Announcements 10(21).
10.1128/MRA.00284-21
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(2021) Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state.
The ISME Journal: Multidisciplinary Journal of Microbial Ecology , 1-11.
10.1038/s41396-021-01143-1
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(2021) IMITATION SWITCH is required for normal chromatin structure and gene repression in PRC2 target domains.
Proceedings of the National Academy of Sciences of the United States of America 118(4), 9.
10.1073/pnas.2010003118
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(2021) Restoring wetlands on intensive agricultural lands modifies nitrogen cycling microbial communities and reduces N2O production potential.
Journal of Environmental Management 299.
10.1016/j.jenvman.2021.113562
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(2021) Microbiome Engineering: Synthetic Biology of Plant-Associated Microbiomes in Sustainable Agriculture.
Trends in Biotechnology 39(3), 244-261.
10.1016/j.tibtech.2020.07.008
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(2021) CRAGE-CRISPR facilitates rapid activation of secondary metabolite biosynthetic gene clusters in bacteria.
Cell Chemical Biology 29.
https://doi.org/10.1016/j.chembiol.2021.08.009
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(2021) Metagenomic insights into the taxonomy, function, and dysbiosis of prokaryotic communities in octocorals.
Microbiome 9(1), 21.
10.1186/s40168-021-01031-y
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(2021) Metagenomic reconstruction of nitrogen and carbon cycling pathways in forest soil: Influence of different hardwood tree species.
Soil Biology and Biochemistry 156.
10.1016/j.soilbio.2021.108226
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(2021) A plant host, Nicotiana benthamiana, enables the production and study of fungal lignin-degrading enzymes.
Communications Biology 4(1).
10.1038/s42003-021-02464-9
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(2021) Virus-associated organosulfur metabolism in human and environmental systems.
Cell Reports 36(5).
10.1016/j.celrep.2021.109471
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(2021) Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages.
Nature Communications 12(1).
10.1038/s41467-021-23698-5
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(2021) Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides.
Frontiers in Bioengineering and Biotechnology 8, 16.
10.3389/fbioe.2020.612832
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(2021) Synthase-Selective Exploration of a Tunicate Microbiome by Activity-Guided Single-Cell Genomics.
ACS Chemical Biology 16(5), 813-819.
10.1021/acschembio.1c00157
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(2021) Further engineering of R. toruloides for the production of terpenes from lignocellulosic biomass.
Biotechnology for Biofuels 14(1).
10.1186/s13068-021-01950-w
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(2021) Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus.
Current Biology 31(17), 3905-3914.e6.
10.1016/j.cub.2021.06.033
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(2021) Pangenomics reveals alternative environmental lifestyles among chlamydiae.
Nature Communications 12(1).
10.1038/s41467-021-24294-3
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(2021) Peatland microbial community responses to plant functional group and drought are depth-dependent.
Molecular Ecology 30(20), 5119-5136.
10.1111/mec.16125
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(2021) Large-scale protein level comparison of Deltaproteobacteria reveals cohesive metabolic groups.
ISME Journal .
10.1038/s41396-021-01057-y
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(2021) Probing specificities of alcohol acyltransferases for designer ester biosynthesis with a high-throughput microbial screening platform.
Biotechnology and Bioengineering .
10.1002/bit.27926
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(2021) Methane-derived carbon flows into host–virus networks at different trophic levels in soil.
Proceedings of the National Academy of Sciences 118(32), e2105124118.
10.1073/pnas.2105124118
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(2021) Plant Pan-Genomics Comes of Age.
Annual Review of Plant Biology 72, 411-435.
10.1146/annurev-arplant-080720-105454
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(2021) Metabolic patterns in Septoria canker resistant and susceptible Populus trichocarpa genotypes 24 hours post-inoculation.
Phytopathology 111.
10.1094/phyto-02-21-0053-r
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(2021) Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses.
Soil Biology and Biochemistry 160.
10.1016/j.soilbio.2021.108349
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(2021) Genetic dissection of natural variation in oilseed traits of camelina by whole-genome resequencing and QTL mapping.
Plant Genome .
10.1002/tpg2.20110
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(2021) Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi.
Frontiers in Microbiology 12, 680267.
10.3389/fmicb.2021.680267
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(2021) Mercury methylation by metabolically versatile and cosmopolitan marine bacteria.
Isme Journal , 16.
10.1038/s41396-020-00889-4
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(2021) Aromatic Dimer Dehydrogenases from Novosphingobium aromaticivorans Reduce Monoaromatic Diketones.
Applied and Environmental Microbiology 87(24), e01742-21.
10.1128/aem.01742-21
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(2021) Diversity, taxonomy, and evolution of archaeal viruses of the class Caudoviricetes.
PLOS Biology 19(11), e3001442.
10.1371/journal.pbio.3001442
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(2021) Metabolic Potential for Reductive Acetogenesis and a Novel Energy-Converting [NiFe] Hydrogenase in Bathyarchaeia From Termite Guts – A Genome-Centric Analysis.
Frontiers in Microbiology 11.
10.3389/fmicb.2020.635786
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(2021) Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding.
Nature Communications 12(1).
10.1038/s41467-021-24328-w
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(2021) Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass.
Nature , 23.
10.1038/s41586-020-03127-1
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(2021) Current status and impending progress for cassava structural genomics.
Plant Molecular Biology , 15.
10.1007/s11103-020-01104-w
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(2021) Improved chromosome-level genome assembly and annotation of the seagrass, Zostera marina (eelgrass) [version 1; peer review: 1 approved].
F1000Research 10(289).
10.12688/f1000research.38156.1
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(2021) Annotated genome sequence of the high-biomass-producing yellow-green alga tribonema minus.
Microbiology Resource Announcements 10(24).
10.1128/MRA.00327-21
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(2021) Revealing enzyme functional architecture via high-throughput microfluidic enzyme kinetics.
Science 373(6553).
10.1126/science.abf8761
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(2021) The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole.
Nature Communications 12(1).
10.1038/s41467-021-25646-9
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(2021) Medicago root nodule microbiomes: insights into a complex ecosystem with potential candidates for plant growth promotion.
Plant and Soil , 1-20.
10.1007/s11104-021-05247-7
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(2021) New Insights Into the Influence of Plant and Microbial Diversity on Denitrification Rates in a Salt Marsh.
Wetlands 41(2), 14.
10.1007/s13157-021-01423-8
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(2021) Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale.
Microbiome 9(1).
10.1186/s40168-020-00957-z
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(2021) Root Exudates Alter the Expression of Diverse Metabolic, Transport, Regulatory, and Stress Response Genes in Rhizosphere Pseudomonas.
Frontiers in Microbiology 12.
10.3389/fmicb.2021.651282
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(2021) Decrypting bacterial polyphenol metabolism in an anoxic wetland soil.
Nature Communications 12(1).
10.1038/s41467-021-22765-1
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(2021) Activity-based, genome-resolved metagenomics uncovers key populations and pathways involved in subsurface conversions of coal to methane.
The ISME Journal: Multidisciplinary Journal of Microbial Ecology , 1-12.
10.1038/s41396-021-01139-x
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(2021) Energy efficiency and biological interactions define the core microbiome of deep oligotrophic groundwater.
Nature Communications 12(1).
10.1038/s41467-021-24549-z
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(2021) Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus.
Molecular Biology and Evolution .
10.1093/molbev/msab063
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(2021) Metabolic Modeling of Fungi.
Encyclopedia of Mycology , 394-405.
10.1016/b978-0-12-809633-8.21068-6
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(2021) Frigoriflavimonas asaccharolytica gen. nov., sp. nov., a novel psychrophilic esterase and protease producing bacterium isolated from Antarctica.
Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology .
10.1007/s10482-021-01656-x
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(2021) KARRIKIN INSENSITIVE2 regulates leaf development, root system architecture and arbuscular‐mycorrhizal symbiosis in Brachypodium distachyon.
The Plant Journal .
10.1111/tpj.15651
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(2021) Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nature Communications 12(1), 7227.
10.1038/s41467-021-27479-y
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(2021) RNA-editing in Basidiomycota, revisited.
ISME Communications 1(1), 70.
10.1038/s43705-021-00037-9
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(2021) Flavin-dependent halogenases catalyze enantioselective olefin halocyclization.
Nature Communications 12(1).
10.1038/s41467-021-23503-3
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(2021) Draft Genome Sequences of the Black Truffles Tuber brumale Vittad. and Tuber indicum Cook & Massee.
Microbiology Resource Announcements 10(4), 3.
10.1128/mra.00799-20
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(2021) Reply to: Examining microbe–metabolite correlations by linear methods.
Nature Methods 18(1), 40-41.
10.1038/s41592-020-01007-0
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(2021) Cytochrome P450-catalyzed biosynthesis of furanoditerpenoids in the bioenergy crop switchgrass (Panicum virgatum L.).
Plant Journal .
10.1111/tpj.15492
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(2021) Genomes OnLine Database (GOLD) v.8: overview and updates.
Nucleic Acids Res 49(D1), D723-D733.
10.1093/nar/gkaa983
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(2021) Genomic analysis of the yet-uncultured binatota reveals broad methylotrophic, alkane-degradation, and pigment production capacities.
mBio 12(3).
10.1128/mBio.00985-21
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(2021) Bioactive diterpenoids impact the composition of the root-associated microbiome in maize (Zea mays).
Scientific Reports 11(1), 13.
10.1038/s41598-020-79320-z
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(2021) Draft Metagenomes of Endolithic Cyanobacteria and Cohabitants from Hyper-Arid Deserts.
Microbiology Resource Announcements 10(30), e00206-21.
10.1128/mra.00206-21
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(2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome.
Nature Microbiology 6(7), 960-970.
10.1038/s41564-021-00928-6
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(2021) Atypical Divergence of SARS-CoV-2 Orf8 from Orf7a within the Coronavirus Lineage Suggests Potential Stealthy Viral Strategies in Immune Evasion.
Mbio 12(1), 12.
10.1128/mBio.03014-20
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(2021) Aerobic bacteria and archaea tend to have larger and more versatile genomes.
Oikos 130(4), 501-511.
10.1111/oik.07912
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(2021) TRIMER: Transcription Regulation Integrated with Metabolic Regulation.
iScience 24(11), 103218.
10.1016/j.isci.2021.103218
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(2021) Niche dimensions of a marine bacterium are identified using invasion studies in coastal seawater.
Nature Microbiology 6(4), 524-+.
10.1038/s41564-020-00851-2
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(2021) Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom.
Scientific Reports 11(1).
10.1038/s41598-021-95106-3
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(2021) Verrucomicrobiota are specialist consumers of sulfated methyl pentoses during diatom blooms.
ISME Journal .
10.1038/s41396-021-01105-7
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(2021) Remarkably coherent population structure for a dominant Antarctic Chlorobium species.
Microbiome 9(1), 231.
10.1186/s40168-021-01173-z
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(2021) Virus Bioinformatics.
Encyclopedia of Virology (Fourth Edition) , 124-132.
10.1016/B978-0-12-814515-9.00034-5
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(2021) Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling.
Plos Computational Biology 17(3), 21.
10.1371/journal.pcbi.1008841
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(2021) Fungal community response to long-term soil warming with potential implications for soil carbon dynamics.
Ecosphere 12(5).
10.1002/ecs2.3460
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(2021) A multiomic approach to understand how pleurotus eryngii transforms non-woody lignocellulosic material.
Journal of Fungi 7(6).
10.3390/jof7060426
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(2021) CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner.
The Cell Surface 7, 100050.
https://doi.org/10.1016/j.tcsw.2021.100050
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(2021) Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes.
Nature Microbiology 6(4), 499-+.
10.1038/s41564-020-00861-0
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(2021) GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser.
Nature Methods , 1-3.
10.1038/s41592-021-01339-5
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(2021) The Santorini Volcanic Complex as a Valuable Source of Enzymes for Bioenergy.
Energies 14(5), 12.
10.3390/en14051414
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(2021) Three founding ancestral genomes involved in the origin of sugarcane.
Annals of Botany 127(6), 827-840.
10.1093/aob/mcab008
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(2021) VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families.
Bioinformatics .
10.1093/bioinformatics/btab026
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(2021) Expanding standards in viromics: In silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation.
PeerJ 9.
10.7717/peerj.11447
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(2021) Pathway discovery and engineering for cleavage of a β-1 lignin-derived biaryl compound.
Metabolic Engineering 65, 1-10.
10.1016/j.ymben.2021.02.003
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(2021) Lytic archaeal viruses infect abundant primary producers in Earth’s crust.
Nature Communications 12(1).
10.1038/s41467-021-24803-4
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(2021) A Novel Freshwater to Marine Evolutionary Transition Revealed within Methylophilaceae Bacteria from the Arctic Ocean.
mBio 12(3), e0130621.
10.1128/mBio.01306-21
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(2021) Divergent Genomic Adaptations in the Microbiomes of Arctic Subzero Sea-Ice and Cryopeg Brines.
Frontiers in Microbiology 12.
10.3389/fmicb.2021.701186
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(2021) An integrated in vivo/in vitro framework to enhance cell-free biosynthesis with metabolically rewired yeast extracts.
Nature Communications 12.
10.1038/s41467-021-25233-y
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(2021) Toward sustainable, cell-free biomanufacturing.
Current Opinion in Biotechnology 69, 136-144.
10.1016/j.copbio.2020.12.012
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(2021) Serendipita fungi modulate the switchgrass root transcriptome to circumvent host defenses and establish a symbiotic relationship.
Molecular Plant-Microbe Interactions® .
10.1094/mpmi-04-21-0084-r
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(2021) High Potential for Biomass-Degrading Enzymes Revealed by Hot Spring Metagenomics.
Frontiers in Microbiology 12.
10.3389/fmicb.2021.668238
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(2021) Diverse ecophysiological adaptations of subsurface Thaumarchaeota in floodplain sediments revealed through genome-resolved metagenomics.
The ISME Journal: Multidisciplinary Journal of Microbial Ecology , 1-13.
10.1038/s41396-021-01167-7
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(2021) Philympics 2021: Prophage Predictions Perplex Programs.
F1000Research 10, 758.
10.12688/f1000research.54449.1
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(2021) Divergence among rice cultivars reveals roles for transposition and epimutation in ongoing evolution of genomic imprinting.
Proceedings of the National Academy of Sciences of the United States of America 118(29).
10.1073/pnas.2104445118
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(2021) Hymenobacter caeli sp. Nov., an airborne bacterium isolated from king george island, antarctica.
International Journal of Systematic and Evolutionary Microbiology 71(6).
10.1099/ijsem.0.004838
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(2021) Nutrient Inputs Stimulate Mercury Methylation by Syntrophs in a Subarctic Peatland.
Frontiers in Microbiology 12, 741523.
10.3389/fmicb.2021.741523
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(2021) IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses.
Nucleic Acids Res 49(D1), D764-D775.
10.1093/nar/gkaa946
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(2021) Ecology and molecular targets of hypermutation in the global microbiome.
Nature Communications 12(1).
10.1038/s41467-021-23402-7
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(2021) Metagenomics in Virology.
Encyclopedia of Virology (Fourth Edition) , 133-140.
10.1016/B978-0-12-809633-8.20957-6
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(2021) Flooding and ecological restoration promote wetland microbial communities and soil functions on former cranberry farmland.
PLoS ONE 16(12), e0260933.
10.1371/journal.pone.0260933
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(2021) Genome, transcriptome and secretome analyses of the antagonistic, yeast-like fungus aureobasidium pullulansto identify potential biocontrol genes.
Microbial Cell 8(8).
10.15698/MIC2021.08.757
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(2021) Description of Candidatus Mesopelagibacter carboxydoxydans and Candidatus Anoxipelagibacter denitrificans: Nitrate-reducing SAR11 genera that dominate mesopelagic and anoxic marine zones.
Systematic and Applied Microbiology 44(2), 126185.
https://doi.org/10.1016/j.syapm.2021.126185
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(2021) The Rhizosphere Responds: Rich Fen Peat and Root Microbial Ecology after Long-Term Water Table Manipulation.
Applied and environmental microbiology 87(12), e0024121.
10.1128/AEM.00241-21
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(2021) BdERECTA controls vasculature patterning and phloem-xylem organization in Brachypodium distachyon.
BMC Plant Biology 21(1).
10.1186/s12870-021-02970-2
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(2021) Tracking the Ancestry of Known and ‘Ghost’ Homeologous Subgenomes in Model Grass Brachypodium Polyploids.
The Plant Journal .
10.1111/tpj.15650
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(2021) Cell Wall Compositions of Sorghum bicolor Leaves and Roots Remain Relatively Constant Under Drought Conditions.
Frontiers in Plant Science 12, 747225.
10.3389/fpls.2021.747225
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(2021) A new-to-nature carboxylation module to improve natural and synthetic CO2 fixation.
Nature Catalysis 4(2), 105-115.
10.1038/s41929-020-00557-y
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(2021) Modulation of sensory perception by hydrogen peroxide enables Caenorhabditis elegans to find a niche that provides both food and protection from hydrogen peroxide.
PLOS Pathogens 17(12), e1010112.
10.1371/journal.ppat.1010112
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(2021) Dissolved inorganic carbon accumulating complexes from autotrophic bacteria from extreme environments.
Journal of Bacteriology , JB.00377-21.
doi:10.1128/JB.00377-21
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(2021) Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System.
Frontiers in Microbiology 12, 754698.
10.3389/fmicb.2021.754698
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(2021) Engineering promiscuity of chloramphenicol acetyltransferase for microbial designer ester biosynthesis.
Metabolic Engineering 66, 179-190.
10.1016/j.ymben.2021.04.005
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(2021) Structures and function of the amino acid polymerase cyanophycin synthetase.
Nature Chemical Biology 17(10), 1101-1110.
10.1038/s41589-021-00854-y
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(2021) An ancestral Matryoshka doll.
Nature Reviews Microbiology 19(3), 140-140.
10.1038/s41579-021-00509-8
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(2021) Impact of Harvest on Switchgrass Leaf Microbial Communities.
Genes 13(1), 22.
10.3390/genes13010022
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(2021) Novel and Emerging Capabilities that Can Provide a Holistic Understanding of the Plant Root Microbiome.
Phytobiomes Journal 5(2).
10.1094/pbiomes-05-20-0042-rvw
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(2021) Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357.
G3: Genes, Genomes, Genetics 11(8).
10.1093/g3journal/jkab213
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(2021) p-Nitrophenyl esters provide new insights and applications for the thiolase enzyme OleA.
Computational and Structural Biotechnology Journal 19, 3087-3096.
10.1016/j.csbj.2021.05.031
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(2021) Stimulation of dissimilatory sulfate reduction in response to sulfate in microcosm incubations from two contrasting temperate peatlands near Ithaca, NY, USA.
FEMS microbiology letters 368(21-24).
10.1093/femsle/fnab153
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(2021) Niche differentiation of bacteria and fungi in carbon and nitrogen cycling of different habitats in a temperate coniferous forest: A metaproteomic approach.
Soil Biology and Biochemistry 155.
10.1016/j.soilbio.2021.108170
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(2021) Recoding of stop codons expands the metabolic potential of two novel Asgardarchaeota lineages.
ISME Communications 1(1), 30.
10.1038/s43705-021-00032-0
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(2021) Uncultivated Viral Populations Dominate Estuarine Viromes on the Spatiotemporal Scale.
mSystems 6(2), e01020-20.
10.1128/mSystems.01020-20
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(2021) A catalog of the diversity and ubiquity of bacterial microcompartments.
Nature Communications 12(1).
10.1038/s41467-021-24126-4
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(2021) Evaluation of inducible promoter–riboswitch constructs for heterologous protein expression in the cyanobacterial species Anabaena sp. PCC 7120.
Synthetic Biology 6(1), ysab019.
10.1093/synbio/ysab019
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(2021) A Genomic Catalog of Stress Response Genes in Anaerobic Fungi for Applications in Bioproduction.
Frontiers in Fungal Biology 2(29).
10.3389/ffunb.2021.708358
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(2021) Cocultivation of anaerobic fungi with rumen bacteria establishes an antagonistic relationship.
mBio 12(4).
10.1128/mBio.01442-21
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(2021) Anaerobic gut fungi are an untapped reservoir of natural products.
Proceedings of the National Academy of Sciences of the United States of America 118(18).
10.1073/pnas.2019855118
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(2021) Biochemistry-Guided Prediction of the Absolute Configuration of Fungal Reduced Polyketides.
Angewandte Chemie - International Edition 60(43), 23403-23411.
10.1002/anie.202110658
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(2021) Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan.
Frontiers in Microbiology 12.
10.3389/fmicb.2021.632731
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(2021) Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake Tanganyika.
Isme Journal , 16.
10.1038/s41396-021-00898-x
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(2021) Prokaryotic responses to a warm temperature anomaly in northeast subarctic Pacific waters.
Communications Biology 4(1), 1217.
10.1038/s42003-021-02731-9
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(2021) New keys to unlock the treasure trove of microbial natural products.
Nature Reviews Microbiology 19.
10.1038/s41579-021-00631-7
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(2021) Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics.
Communications Biology 4(1), 1302.
10.1038/s42003-021-02809-4
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(2021) Natural soil microbiome variation affects spring foliar phenology with consequences for plant productivity and climate-driven range shifts.
New Phytologist 232(2), 762-775.
10.1111/nph.17599
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(2021) Discovery of photosynthesis genes through whole-genome sequencing of acetaterequiring mutants of Chlamydomonas reinhardtii.
PLoS Genetics 17(9).
10.1371/journal.pgen.1009725
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(2021) Impacts of The Wetland Sedge Carex aquatilis on Microbial Community and Methane Metabolisms.
Plant and Soil , 1-16.
10.1007/s11104-021-05239-7
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(2021) Exploring proteomes of robust yarrowia lipolytica isolates cultivated in biomass hydrolysate reveals key processes impacting mixed sugar utilization, lipid accumulation, and degradation.
mSystems 6(4).
10.1128/mSystems.00443-21
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(2021) Enzyme engineering and in vivo testing of a formate reduction pathway.
Synthetic Biology 6(1), ysab020.
10.1093/synbio/ysab020
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(2021) Escalation in the host-pathogen arms race: A host resistance response corresponds to a heightened bacterial virulence response.
Plos Pathogens 17(1), 27.
10.1371/journal.ppat.1009175
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(2021) Aerobic bacterial methane synthesis.
Proceedings of the National Academy of Sciences of the United States of America 118(27).
10.1073/pnas.2019229118
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(2021) Metagenome sequencing to explore phylogenomics of terrestrial cyanobacteria.
Microbiology Resource Announcements 10(22).
10.1128/MRA.00258-21
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(2021) Climate-driven divergence in plant-microbiome interactions generates range-wide variation in bud break phenology.
Communications Biology 4(1).
10.1038/s42003-021-02244-5
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(2021) Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus.
mSystems 6(1), e00002-21.
10.1128/mSystems.00002-21
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(2021) Genome Analysis of a Verrucomicrobial Endosymbiont With a Tiny Genome Discovered in an Antarctic Lake.
Frontiers in Microbiology 12.
10.3389/fmicb.2021.674758
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(2021) Soil metabolome response to whole-ecosystem warming at the spruce and peatland responses under changing environments experiment.
Proceedings of the National Academy of Sciences of the United States of America 118(25).
10.1073/pnas.2004192118
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(2021) Diversification of mandarin citrus by hybrid speciation and apomixis.
Nature Communications 12.
10.1038/s41467-021-24653-0
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(2021) The Ancient Salicoid Genome Duplication Event: A Platform for Reconstruction of De Novo Gene Evolution in Populus trichocarpa.
Genome Biology and Evolution 13(9).
10.1093/gbe/evab198
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(2021) Laboratory Evolution and Reverse Engineering of Clostridium thermocellum for Growth on Glucose and Fructose.
Applied and Environmental Microbiology 87(9), 1-18.
10.1128/AEM.03017-20
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(2021) Specialized Plant Growth Chamber Designs to Study Complex Rhizosphere Interactions.
Frontiers in Microbiology 12.
10.3389/fmicb.2021.625752
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(2021) efam: an expanded, metaproteome-supported HMM profile database of viral protein families.
Bioinformatics .
10.1093/bioinformatics/btab451
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(2021) Mechanisms of Manganese(II) Oxidation by Filamentous Ascomycete Fungi Vary With Species and Time as a Function of Secretome Composition.
Frontiers in Microbiology 12, 19.
10.3389/fmicb.2021.610497
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(2021) Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodes.
Journal of Advanced Research .
10.1016/j.jare.2021.09.008
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(2021) RNA-Seq-based high-resolution linkage map reveals the genetic architecture of fruiting body development in shiitake mushroom, Lentinula edodes.
Computational and Structural Biotechnology Journal 19, 1641-1653.
10.1016/j.csbj.2021.03.016
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(2021) RNA-Seq-based high-resolution linkage map reveals the genetic architecture of fruiting body development in shiitake mushroom, Lentinula edodes.
Computational and Structural Biotechnology Journal 19, 1641-1653.
10.1016/j.csbj.2021.03.016
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(2021) Genome-wide role of codon usage on transcription and identification of potential regulators.
Proceedings of the National Academy of Sciences of the United States of America 118(6), 11.
10.1073/pnas.2022590118
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(2021) Editorial overview: Energy biotechnology.
Current Opinion in Biotechnology 67, III-V.
10.1016/j.copbio.2021.01.018
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(2021) Glacier ice archives nearly 15,000-year-old microbes and phages.
Microbiome 9(1).
10.1186/s40168-021-01106-w
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(2021) Microbial drivers of methane emissions from unrestored industrial salt ponds.
ISME Journal .
10.1038/s41396-021-01067-w
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(2021) Isolation of Histone from Sorghum Leaf Tissue for Top Down Mass Spectrometry Profiling of Potential Epigenetic Markers.
Journal of visualized experiments : JoVE (169).
10.3791/61707
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