(2015) A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes.
Microbiome 3, 5.
10.1186/s40168-015-0067-8
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(2015) Complete Genome Sequences of Evolved Arsenate-Resistant Metallosphaera sedula Strains.
Genome Announc 3(5).
10.1128/genomeA.01142-15
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(2015) High-Resolution Linkage Map and Chromosome-Scale Genome Assembly for Cassava (Manihot esculenta Crantz) from 10 Populations.
G3-Genes Genomes Genetics 5(1), 133-144.
DOI 10.1534/g3.114.015008
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(2015) Genome Sequence of Methanosarcina soligelidi SMA-21, Isolated from Siberian Permafrost-Affected Soil.
Genome Announc 3(2).
10.1128/genomeA.00270-15
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(2015) The octopus genome and the evolution of cephalopod neural and morphological novelties.
Nature 524(7564), 220-4.
10.1038/nature14668
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(2015) MICROBIOME. A unified initiative to harness Earth's microbiomes.
Science 350(6260), 507-8.
10.1126/science.aac8480
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(2015) High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil.
Stand Genomic Sci 10, 126.
10.1186/s40793-015-0119-5
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(2015) Draft Genome Sequence of Neurospora crassa Strain FGSC 73.
Genome Announc 3(2).
10.1128/genomeA.00074-15
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(2015) Exometabolite niche partitioning among sympatric soil bacteria.
Nat Commun 6, 8289.
10.1038/ncomms9289
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(2015) Ecophysiology of an uncultivated lineage of Aigarchaeota from an oxic, hot spring filamentous 'streamer' community.
ISME J 10(1), 210-24.
10.1038/ismej.2015.83
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(2015) Multiphyletic origins of methylotrophy in Alphaproteobacteria, exemplified by comparative genomics of Lake Washington isolates.
Environ Microbiol 17(3), 547-54.
10.1111/1462-2920.12736
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(2015) Bioboxes: standardised containers for interchangeable bioinformatics software.
Gigascience 4, 47.
10.1186/s13742-015-0087-0
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(2015) Bioboxes: standardised containers for interchangeable bioinformatics software.
Gigascience 4, 47.
10.1186/s13742-015-0087-0
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(2015) Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1(T), an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake.
Stand Genomic Sci 10, 105.
10.1186/s40793-015-0097-7
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(2015) Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2(T).
Stand Genomic Sci 10, 85.
10.1186/s40793-015-0078-x
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(2015) Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1(T), a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification.
Stand Genomic Sci 10, 84.
10.1186/s40793-015-0080-3
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(2015) Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells.
Proc Natl Acad Sci U S A 112(2), E194-203.
10.1073/pnas.1420406112
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(2015) Active site and laminarin binding in glycoside hydrolase family 55.
J Biol Chem 290(19), 11819-32.
10.1074/jbc.M114.623579
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(2015) Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov.
Stand Genomic Sci 10, 106.
10.1186/s40793-015-0100-3
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(2015) Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov.
Stand Genomic Sci 10, 106.
10.1186/s40793-015-0100-3
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(2015) The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections.
Appl Environ Microbiol 81(17), 5671-4.
10.1128/AEM.01176-15
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(2015) Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community.
BMC Genomics 16(1), 856.
10.1186/s12864-015-2063-6
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(2015) Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community.
BMC Genomics 16(1), 856.
10.1186/s12864-015-2063-6
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(2015) Genetic isolation between two recently diverged populations of a symbiotic fungus.
Mol Ecol .
10.1111/mec.13132
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(2015) Genome of Methanoregula boonei 6A8 reveals adaptations to oligotrophic peatland environments.
Microbiology .
10.1099/mic.0.000117
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(2015) Unusual biology across a group comprising more than 15% of domain Bacteria.
Nature 523(7559), 208-11.
10.1038/nature14486
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(2015) Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park.
Stand Genomic Sci 10, 73.
10.1186/s40793-015-0031-z
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(2015) Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses.
Annu Rev Plant Biol 66, 465-85.
10.1146/annurev-arplant-042811-105528
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(2015) Complete Genome Sequence of Methanosphaerula palustris E1-9CT, a Hydrogenotrophic Methanogen Isolated from a Minerotrophic Fen Peatland.
Genome Announc 3(6).
10.1128/genomeA.01280-15
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(2015) Elviz - exploration of metagenome assemblies with an interactive visualization tool.
BMC Bioinformatics 16, 130.
10.1186/s12859-015-0566-4
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(2015) Abundant Atribacteria in deep marine sediment from the Adelie Basin, Antarctica.
Front Microbiol 6, 872.
10.3389/fmicb.2015.00872
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(2015) Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling.
Curr Biol 25(6), 690-701.
10.1016/j.cub.2015.01.014
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(2015) Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants.
Genome Biol Evol 7(6), 1590-601.
10.1093/gbe/evv090
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(2015) A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome.
Genome Biol 16, 26.
10.1186/s13059-015-0582-8
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(2015) The integrated microbial genome resource of analysis.
Methods Mol Biol 1231, 289-95.
10.1007/978-1-4939-1720-4_18
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(2015) Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments.
Plant Physiol 168(3), 953-67.
10.1104/pp.15.00095
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(2015) High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture.
Stand Genomic Sci 10, 98.
10.1186/s40793-015-0088-8
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(2015) High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture.
Stand Genomic Sci 10, 98.
10.1186/s40793-015-0088-8
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(2015) Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis.
ACS Synth Biol 4(8), 927-34.
10.1021/acssynbio.5b00087
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(2015) Rex (encoded by DVU_0916) in Desulfovibrio vulgaris Hildenborough is a repressor of sulfate adenylyl transferase and is regulated by NADH.
J Bacteriol 197(1), 29-39.
10.1128/JB.02083-14
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(2015) Acute Limonene Toxicity in Escherichia coli Is Caused by Limonene Hydroperoxide and Alleviated by a Point Mutation in Alkyl Hydroperoxidase AhpC.
Appl Environ Microbiol 81(14), 4690-6.
10.1128/AEM.01102-15
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(2015) Genome Sequence of the Alkaline-Tolerant Cellulomonas sp. Strain FA1.
Genome Announc 3(3).
10.1128/genomeA.00646-15
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(2015) Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus.
Biotechnol Biofuels 8, 216.
10.1186/s13068-015-0407-8
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(2015) Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus.
Biotechnol Biofuels 8, 216.
10.1186/s13068-015-0407-8
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(2015) High-quality permanent draft genome sequence of the Mimosa asperata - nodulating Cupriavidus sp. strain AMP6.
Stand Genomic Sci 10, 80.
10.1186/s40793-015-0074-1
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(2015) High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176.
Stand Genomic Sci 10, 79.
10.1186/s40793-015-0072-3
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(2015) High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Burkholderia sp. strain UYPR1.413.
Stand Genomic Sci 10, 31.
10.1186/s40793-015-0018-9
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(2015) High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512.
Stand Genomic Sci 10, 13.
10.1186/1944-3277-10-13
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(2015) High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T).
Stand Genomic Sci 10, 64.
10.1186/s40793-015-0048-3
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(2015) High-quality permanent draft genome sequence of the Mimosa asperata - nodulating Cupriavidus sp. strain AMP6.
Stand Genomic Sci 10, 80.
10.1186/s40793-015-0074-1
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(2015) High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176.
Stand Genomic Sci 10, 79.
10.1186/s40793-015-0072-3
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(2015) Draft Genome Sequence of Methyloferula stellata AR4, an Obligate Methanotroph Possessing Only a Soluble Methane Monooxygenase.
Genome Announc 3(2).
10.1128/genomeA.01555-14
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(2015) Development of a High Throughput Platform for Screening Glycoside Hydrolases Based on Oxime-NIMS.
Front Bioeng Biotechnol 3, 153.
10.3389/fbioe.2015.00153
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(2015) Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen.
Proc Natl Acad Sci U S A 112(11), 3451-6.
10.1073/pnas.1424293112
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(2015) Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis.
New Phytol .
10.1111/nph.13546
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(2015) Advancements in the application of NanoSIMS and Raman microspectroscopy to investigate the activity of microbial cells in soils.
FEMS Microbiol Ecol .
10.1093/femsec/fiv106
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(2015) High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia.
Stand Genomic Sci 10, 87.
10.1186/s40793-015-0073-2
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(2015) High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia.
Stand Genomic Sci 10, 87.
10.1186/s40793-015-0073-2
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(2015) Diversity and Population Structure of Northern Switchgrass as Revealed Through Exome Capture Sequencing.
Plant J .
10.1111/tpj.13041
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(2015) Diversity and Population Structure of Northern Switchgrass as Revealed Through Exome Capture Sequencing.
Plant J .
10.1111/tpj.13041
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(2015) High-Density Single Nucleotide Polymorphism Linkage Maps of Lowland Switchgrass using Genotyping-by-Sequencing.
The Plant Genome 8(2).
10.3835/plantgenome2014.10.0065
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(2015) Genome sequence of the plant growth promoting endophytic yeast Rhodotorula graminis WP1.
Front Microbiol 6, 978.
10.3389/fmicb.2015.00978
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(2015) Brachypodium as an emerging model for cereal-pathogen interactions.
Ann Bot 115(5), 717-31.
10.1093/aob/mcv010
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(2015) Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii.
Fungal Genet Biol 76, 78-92.
10.1016/j.fgb.2015.02.002
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(2015) Draft genome sequence of Halomonas lutea strain YIM 91125(T) (DSM 23508(T)) isolated from the alkaline Lake Ebinur in Northwest China.
Stand Genomic Sci 10, 1.
10.1186/1944-3277-10-1
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(2015) Bioinformatic analysis of the distribution of inorganic carbon transporters and prospective targets for bioengineering to increase Ci uptake by cyanobacteria.
Photosynth Res 126(1), 99-109.
10.1007/s11120-014-0059-8
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(2015) Bioinformatic analysis of the distribution of inorganic carbon transporters and prospective targets for bioengineering to increase Ci uptake by cyanobacteria.
Photosynth Res 126(1), 99-109.
10.1007/s11120-014-0059-8
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(2015) The Joint Genome Institute Offers Resources Beyond a Core Facility.
Microbe 10(7), 289-293.
10.1128/microbe.10.289.1
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(2015) Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost.
Stand Genomic Sci 10, 61.
10.1186/s40793-015-0043-8
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(2015) Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing.
PLoS One 10(7), e0132628.
10.1371/journal.pone.0132628
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(2015) Genome Sequence of Polycyclovorans algicola Strain TG408, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton.
Genome Announc 3(2).
10.1128/genomeA.00207-15
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(2015) Genome Sequence of Halomonas sp. Strain MCTG39a, a Hydrocarbon-Degrading and Exopolymeric Substance-Producing Bacterium.
Genome Announc 3(4).
10.1128/genomeA.00793-15
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(2015) Genome Sequence of Porticoccus hydrocarbonoclasticus Strain MCTG13d, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton.
Genome Announc 3(3).
10.1128/genomeA.00672-15
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(2015) Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis.
G3 (Bethesda) 5(8), 1593-602.
10.1534/g3.115.017665
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(2015) IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites.
MBio 6(4).
10.1128/mBio.00932-15
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(2015) High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2(T) (DSM 21788(T)), a valuable source of polysaccharide decomposing enzymes.
Stand Genomic Sci 10, 46.
10.1186/s40793-015-0032-y
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(2015) Draft genomes of gammaproteobacterial methanotrophs isolated from terrestrial ecosystems.
Genome Announc 3(3).
10.1128/genomeA.00515-15
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(2015) Development of an orthogonal fatty acid biosynthesis system in E. coli for oleochemical production.
Metab Eng 30, 1-6.
10.1016/j.ymben.2015.04.003
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(2015) Patterns in wetland microbial community composition and functional gene repertoire associated with methane emissions.
MBio 6(3), e00066-15.
10.1128/mBio.00066-15
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(2015) Patterns in wetland microbial community composition and functional gene repertoire associated with methane emissions.
MBio 6(3), e00066-15.
10.1128/mBio.00066-15
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(2015) High-Quality Draft Genome Sequence of Kallotenue papyrolyticum JKG1T Reveals Broad Heterotrophic Capacity Focused on Carbohydrate and Amino Acid Metabolism.
Genome Announc 3(6).
10.1128/genomeA.01410-15
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(2015) Uncultivated thermophiles: current status and spotlight on 'Aigarchaeota'.
Curr Opin Microbiol 25, 136-45.
10.1016/j.mib.2015.06.008
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(2015) High-Quality Draft Genome Sequence of Kallotenue papyrolyticum JKG1T Reveals Broad Heterotrophic Capacity Focused on Carbohydrate and Amino Acid Metabolism.
Genome Announc 3(6).
10.1128/genomeA.01410-15
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(2015) Examining the cause of high inbreeding depression: analysis of whole-genome sequence data in 28 selfed progeny of Eucalyptus grandis.
New Phytol .
10.1111/nph.13639
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(2015) Comparative metagenomics reveals impact of contaminants on groundwater microbiomes.
Front Microbiol 6, 1205.
10.3389/fmicb.2015.01205
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(2015) Lignin-modifying processes in the rhizosphere of arid land grasses.
Environ Microbiol 17(12), 4965-78.
10.1111/1462-2920.13020
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(2015) Lignin-Modifying Processes in the Rhizosphere of Aridland Grasses.
Environ Microbiol .
10.1111/1462-2920.13020
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(2015) Aquifer environment selects for microbial species cohorts in sediment and groundwater.
ISME J .
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(2015) Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages.
Environ Microbiol .
10.1111/1462-2920.12930
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(2015) Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes.
Nature 521(7551), 208-12.
10.1038/nature14238
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(2015) The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).
Stand Genomic Sci 10, 86.
10.1186/s40793-015-0077-y
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(2015) Complete Genome Sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment.
Genome Announc 3(1).
10.1128/genomeA.01449-14
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(2015) Geomicrobiology of sublacustrine thermal vents in Yellowstone Lake: geochemical controls on microbial community structure and function.
Front Microbiol 6, 1044.
10.3389/fmicb.2015.01044
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(2015) Draft genome sequences of gammaproteobacterial methanotrophs isolated from lake washington sediment.
Genome Announc 3(2).
10.1128/genomeA.00103-15
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(2015) MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities.
PeerJ 3, e1165.
10.7717/peerj.1165
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(2015) MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities.
PeerJ 3, e1165.
10.7717/peerj.1165
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(2015) MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities.
PeerJ 3, e1165.
10.7717/peerj.1165
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(2015) Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unravelled with genome-resolved metagenomics.
Environ Microbiol .
10.1111/1462-2920.12936
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(2015) Comparative Genomic Insights into Ecophysiology of Neutrophilic, Microaerophilic Iron Oxidizing Bacteria.
Frontiers in Microbiology 6.
ARTN 1265
10.3389/fmicb.2015.01265
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(2015) sigma54-dependent regulome in Desulfovibrio vulgaris Hildenborough.
BMC Genomics 16, 919.
10.1186/s12864-015-2176-y
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(2015) Spatial Homogeneity of Bacterial Communities Associated with the Surface Mucus Layer of the Reef-Building Coral Acropora palmata.
PLoS One 10(12), e0143790.
10.1371/journal.pone.0143790
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(2015) Enhancing Terpene Yield from Sugars via Novel Routes to 1-Deoxy-d-Xylulose 5-Phosphate.
Appl Environ Microbiol 81(1), 130-8.
10.1128/AEM.02920-14
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(2015) Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists (vol 47, pg 410, 2015).
Nature Genetics 47(4), 410-415.
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(2015) Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists (vol 47, pg 410, 2015).
Nature Genetics 47(4), 410-415.
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(2015) Complete Genome Sequence of the Opitutaceae Bacterium Strain TAV5, a Potential Facultative Methylotroph of the Wood-Feeding Termite Reticulitermes flavipes.
Genome Announc 3(2).
10.1128/genomeA.00060-15
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(2015) Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems.
MBio 6(4).
10.1128/mBio.00918-15
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(2015) Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton.
ISME J .
10.1038/ismej.2015.48
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(2015) FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads.
Bioinformatics .
10.1093/bioinformatics/btv280
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(2015) Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum).
Proteomics .
10.1002/pmic.201400487
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(2015) Genome sequence of the pink-pigmented marine bacterium Loktanella hongkongensis type strain (UST950701-009P(T)), a representative of the Roseobacter group.
Stand Genomic Sci 10, 51.
10.1186/s40793-015-0050-9
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(2015) High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass.
Stand Genomic Sci 10, 21.
10.1186/s40793-015-0003-3
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(2015) High quality draft genome sequence of Brachymonas chironomi AIMA4(T) (DSM 19884(T)) isolated from a Chironomus sp. egg mass.
Stand Genomic Sci 10, 29.
10.1186/s40793-015-0010-4
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(2015) Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa.
Science .
10.1126/science.aaa8764
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(2015) Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and "Thermoanaerobacter cellulolyticus".
Genome Announc 3(3).
10.1128/genomeA.00440-15
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(2015) Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype.
BMC Genomics 16, 326.
10.1186/s12864-015-1526-0
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(2015) A Xyloglucan Backbone 6-O-Acetyltransferase from Brachypodium distachyon Modulates Xyloglucan Xylosylation.
Mol Plant .
10.1016/j.molp.2015.11.004
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(2015) Performance evaluation and tuning of BioPig for genomic analysis.
Proceedings of the 2015 International Workshop on Data-Intensive Scalable Computing Systems , 1-7.
10.1145/2831244.2831252
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(2015) The deuterostome context of chordate origins.
Nature 520(7548), 456-65.
10.1038/nature14434
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(2015) Identification and distribution of the NBS-LRR gene family in the Cassava genome.
BMC Genomics 16, 360.
10.1186/s12864-015-1554-9
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(2015) Diverse uncultivated ultra-small bacterial cells in groundwater.
Nat Commun 6, 6372.
10.1038/ncomms7372
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(2015) Integrative genomic mining for enzyme function to enable engineering of a non-natural biosynthetic pathway.
Nat Commun 6, 10005.
10.1038/ncomms10005
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(2015) Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System.
Trends Microbiol 23(11), 730-41.
10.1016/j.tim.2015.07.012
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(2015) Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System.
Trends Microbiol 23(11), 730-41.
10.1016/j.tim.2015.07.012
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(2015) A New Nomenclature of Xenopus laevis Chromosomes Based on the Phylogenetic Relationship to Silurana/Xenopus tropicalis.
Cytogenet Genome Res .
10.1159/000381292
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(2015) High-quality permanent draft genome sequence of Rhizobium leguminosarum bv. viciae strain GB30; an effective microsymbiont of Pisum sativum growing in Poland.
Stand Genomic Sci 10, 36.
10.1186/s40793-015-0029-6
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(2015) Expanding the Limits of Thermoacidophily in the Archaeon Sulfolobus solfataricus by Adaptive Evolution.
Appl Environ Microbiol .
10.1128/AEM.03225-15
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(2015) Complete Genome Sequence of Sulfolobus solfataricus Strain 98/2 and Evolved Derivatives.
Genome Announc 3(3).
10.1128/genomeA.00549-15
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(2015) High quality draft genome sequence of Meganema perideroedes str. Gr1(T) and a proposal for its reclassification to the family Meganemaceae fam. nov.
Stand Genomic Sci 10, 23.
10.1186/s40793-015-0013-1
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(2015) Draft genome sequences of five new strains of methylophilaceae isolated from lake washington sediment.
Genome Announc 3(1).
10.1128/genomeA.01511-14
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(2015) Draft genomes of two strains of flavobacterium isolated from lake washington sediment.
Genome Announc 3(1).
10.1128/genomeA.01597-14
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(2015) Draft Genome of Pseudomonas sp. Strain 11/12A, Isolated from Lake Washington Sediment.
Genome Announc 3(1).
10.1128/genomeA.01587-14
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(2015) Draft Genome of Janthinobacterium sp. RA13 Isolated from Lake Washington Sediment.
Genome Announc 3(1).
10.1128/genomeA.01588-14
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(2015) Minimum Information about a Biosynthetic Gene cluster.
Nat Chem Biol 11(9), 625-631.
10.1038/nchembio.1890
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(2015) High-quality permanent draft genome sequence of Ensifer meliloti strain 4H41, an effective salt- and drought-tolerant microsymbiont of Phaseolus vulgaris.
Stand Genomic Sci 10, 34.
10.1186/s40793-015-0005-1
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(2015) Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation.
J Biotechnol 211, 42-43.
10.1016/j.jbiotec.2015.06.426
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(2015) High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus.
BMC Genomics 16, 24.
10.1186/s12864-015-1215-z
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(2015) Large-scale contamination of microbial isolate genomes by Illumina PhiX control.
Stand Genomic Sci 10, 18.
10.1186/1944-3277-10-18
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(2015) High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1(T) (DSM 17521(T)) isolated from muddy waters of a drainage system in Chandigarh, India.
Stand Genomic Sci 10, 8.
10.1186/1944-3277-10-8
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(2015) Sequencing of 15,622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.
Plant J .
10.1111/tpj.12959
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(2015) Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea.
PLoS One 10(10), e0141586.
10.1371/journal.pone.0141586
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(2015) Comparative genomics of early-diverging mushroom-forming fungi provides insights into the origins of lignocellulose decay capabilities.
Mol Biol Evol .
10.1093/molbev/msv337
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(2015) Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae.
Nature Plants 1(1).
10.1038/nplants.2015.107
http://www.nature.com/articles/nplants2015107#supplementary-information
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(2015) Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor.
ISME J .
10.1038/ismej.2014.256
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(2015) Phylogeny and physiology of candidate phylum 'Atribacteria' (OP9/JS1) inferred from cultivation-independent genomics.
ISME J .
10.1038/ismej.2015.97
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(2015) High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea.
Stand Genomic Sci 10, 52.
10.1186/s40793-015-0052-7
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(2015) The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat.
Front Microbiol 6, 604.
10.3389/fmicb.2015.00604
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(2015) Metagenomic investigation of the geologically unique Hellenic Volcanic Arc reveals a distinctive ecosystem with unexpected physiology.
Environ Microbiol .
10.1111/1462-2920.13095
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(2015) Metatranscriptomic insights on gene expression and regulatory controls in Candidatus Accumulibacter phosphatis.
ISME J .
10.1038/ismej.2015.155
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(2015) Targeted diversity generation by intraterrestrial archaea and archaeal viruses.
Nat Commun 6, 6585.
10.1038/ncomms7585
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(2015) Large variability of bathypelagic microbial eukaryotic communities across the world's oceans.
ISME J .
10.1038/ismej.2015.170
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(2015) Large variability of bathypelagic microbial eukaryotic communities across the world's oceans.
ISME J .
10.1038/ismej.2015.170
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(2015) Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels.
PLoS One 10(6), e0118285.
10.1371/journal.pone.0118285
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(2015) Insights into the bacterial community and its temporal succession during the fermentation of wine grapes.
Front Microbiol 6, 809.
10.3389/fmicb.2015.00809
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(2015) Identification of a Novel Nematotoxic Protein by Challenging the Model Mushroom Coprinopsis cinerea with a Fungivorous Nematode.
G3 (Bethesda) 6(1), 87-98.
10.1534/g3.115.023069
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(2015) The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
Mol Plant Microbe Interact 28(3), 261-73.
10.1094/MPMI-05-14-0129-FI
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(2015) SBOL Visual: A Graphical Language for Genetic Designs.
PLoS Biol 13(12), e1002310.
10.1371/journal.pbio.1002310
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(2015) High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater.
Genome Announc 3(2).
10.1128/genomeA.00092-15
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(2015) Complete Genome Sequence of Cupriavidus basilensis 4G11, Isolated from the Oak Ridge Field Research Center Site.
Genome Announc 3(3).
10.1128/genomeA.00322-15
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(2015) A Genomic Encyclopedia of the Root Nodule Bacteria: assessing genetic diversity through a systematic biogeographic survey.
Stand Genomic Sci 10, 14.
10.1186/1944-3277-10-14
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(2015) High-Quality draft genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain CJ3Sym.
Stand Genomic Sci 10, 54.
10.1186/s40793-015-0049-2
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(2015) GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems.
Elife 4.
10.7554/eLife.07597
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(2015) Draft Genome Sequence of the Cellulolytic and Xylanolytic Thermophile Clostridium clariflavum Strain 4-2a.
Genome Announc 3(4).
10.1128/genomeA.00797-15
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(2015) Viral dark matter and virus-host interactions resolved from publicly available microbial genomes.
Elife 4.
10.7554/eLife.08490
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(2015) High quality draft genome sequence of Bacteroides barnesiae type strain BL2(T) (DSM 18169(T)) from chicken caecum.
Stand Genomic Sci 10, 48.
10.1186/s40793-015-0045-6
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(2015) Particle-association lifestyle is a phylogenetically conserved trait in bathypelagic prokaryotes.
Mol Ecol .
10.1111/mec.13419
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(2015) Global diversity and biogeography of deep-sea pelagic prokaryotes.
ISME J .
10.1038/ismej.2015.137
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(2015) Draft Genome Sequence of Raoultella terrigena R1Gly, a Diazotrophic Endophyte.
Genome Announc 3(3).
10.1128/genomeA.00607-15
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(2015) Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses.
PLoS Pathog 11(3), e1004809.
10.1371/journal.ppat.1004809
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(2015) Bright luminescence of Vibrio fischeri aconitase mutants reveals a connection between citrate and the Gac/Csr regulatory system.
Mol Microbiol 95(2), 283-96.
10.1111/mmi.12864
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(2015) Discovery of Novel Plant Interaction Determinants from the Genomes of 163 Root Nodule Bacteria.
Sci Rep 5, 16825.
10.1038/srep16825
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(2015) Discovery of Novel Plant Interaction Determinants from the Genomes of 163 Root Nodule Bacteria.
Sci Rep 5, 16825.
10.1038/srep16825
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(2015) Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte?.
Sci Rep 5, 10134.
10.1038/srep10134
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(2015) Targeted Switchgrass BAC Library Screening and Sequence Analysis Identifies Predicted Biomass and Stress Response-Related Genes.
Bioenerg Res , 1-14.
10.1007/s12155-015-9667-1
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(2015) Accurate, multi-kb reads resolve complex populations and detect rare microorganisms.
Genome Res 25(4), 534-43.
10.1101/gr.183012.114
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(2015) Draft Genome Sequence of the Moderately Halophilic Methanotroph Methylohalobius crimeensis Strain 10Ki.
Genome Announc 3(3).
10.1128/genomeA.00644-15
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(2015) Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4.
Stand Genomic Sci 10, 55.
10.1186/s40793-015-0041-x
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(2015) Performance evaluation and tuning of BioPig for genomic analysis.
Proceedings of the 2015 International Workshop on Data-Intensive Scalable Computing Systems , 1-7.
10.1145/2831244.2831252
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(2015) Computational protein design enables a novel one-carbon assimilation pathway.
Proc Natl Acad Sci U S A 112(12), 3704-9.
10.1073/pnas.1500545112
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(2015) Exometabolomics and MSI: deconstructing how cells interact to transform their small molecule environment.
Curr Opin Biotechnol 34, 209-216.
10.1016/j.copbio.2015.03.015
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(2015) The Joint Genome Institute's synthetic biology internal review process.
Journal of Responsible Innovation 2(1), 133-136.
10.1080/23299460.2014.1002058
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(2015) Similar Microbial Communities Found on Two Distant Seafloor Basalts.
Frontiers in Microbiology 6.
10.3389/fmicb.2015.01409
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(2015) Similar Microbial Communities Found on Two Distant Seafloor Basalts.
Frontiers in Microbiology 6.
ARTN 1409
10.3389/fmicb.2015.01409
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(2015) Complete Genome Sequence of an Evolved Thermotoga maritima Isolate.
Genome Announc 3(3).
10.1128/genomeA.00557-15
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(2015) Functional and genomic diversity of methylotrophic Rhodocyclaceae: description of the new species Methyloversatilis discipulorum sp. nov.
Int J Syst Evol Microbiol .
10.1099/ijs.0.000190
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(2015) The BioMart community portal: an innovative alternative to large, centralized data repositories.
Nucleic Acids Res 43(W1), W589-98.
10.1093/nar/gkv350
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(2015) SNP Assay Development for Linkage Map Construction, Anchoring Whole Genome Sequence and Other Genetic and Genomic Applications in Common Bean.
G3 (Bethesda) .
10.1534/g3.115.020594
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(2015) Metagenomic reconstructions of bacterial CRISPR loci constrain population histories.
ISME J .
10.1038/ismej.2015.162
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(2015) ProDeGe: a computational protocol for fully automated decontamination of genomes.
ISME J .
10.1038/ismej.2015.100
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(2015) High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica.
Stand Genomic Sci 10, 33.
10.1186/s40793-015-0007-z
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(2015) High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York.
Stand Genomic Sci 10, 24.
10.1186/s40793-015-0008-y
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(2015) High-quality permanent draft genome sequence of Bradyrhizobium sp. Tv2a.2, a microsymbiont of Tachigali versicolor discovered in Barro Colorado Island of Panama.
Stand Genomic Sci 10, 27.
10.1186/s40793-015-0006-0
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(2015) Draft Genome Sequence of Frankia sp. Strain DC12, an Atypical, Noninfective, Ineffective Isolate from Datisca cannabina.
Genome Announc 3(4).
10.1128/genomeA.00889-15
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(2015) Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos.
Stand Genomic Sci 10, 113.
10.1186/s40793-015-0115-9
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(2015) Primer and platform effects on 16S rRNA tag sequencing.
Front Microbiol 6, 771.
10.3389/fmicb.2015.00771
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(2015) Toward a standard in structural genome annotation for prokaryotes.
Stand Genomic Sci 10, 45.
10.1186/s40793-015-0034-9
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(2015) Antarctic archaea-virus interactions: metaproteome-led analysis of invasion, evasion and adaptation.
ISME J 9(9), 2094-107.
10.1038/ismej.2015.110
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(2015) Microbial species delineation using whole genome sequences.
Nucleic Acids Res 43(14), 6761-71.
10.1093/nar/gkv657
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(2015) Trichodesmium genome maintains abundant, widespread noncoding DNA in situ, despite oligotrophic lifestyle.
Proc Natl Acad Sci U S A 112(14), 4251-6.
10.1073/pnas.1422332112
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(2015) Bayesian Spatial-Temporal Modeling of Ecological Zero-Inflated Count Data.
Statistica Sinica 25(1), 189-204.
DOI 10.5705/ss.2013.212w
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(2015) A viability-linked metagenomic analysis of cleanroom environments: eukarya, prokaryotes, and viruses.
Microbiome 3, 62.
10.1186/s40168-015-0129-y
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(2015) Rapid quantification of mutant fitness in diverse bacteria by sequencing randomly bar-coded transposons.
MBio 6(3), e00306-15.
10.1128/mBio.00306-15
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(2015) Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains.
Stand Genomic Sci 10, 26.
10.1186/s40793-015-0017-x
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(2015) Function-driven single-cell genomics.
Microb Biotechnol 8(1), 38-9.
10.1111/1751-7915.12247
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(2015) Functionally conserved enhancers with divergent sequences in distant vertebrates.
BMC Genomics 16, 882.
10.1186/s12864-015-2070-7
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(2015) A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world.
New Phytol 207(3), 491-504.
10.1111/nph.13393
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(2015) High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395(T) (DSM 45146(T)).
Stand Genomic Sci 10, 50.
10.1186/s40793-015-0036-7
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(2015) High-quality permanent draft genome sequence of Rhizobium sullae strain WSM1592; a Hedysarum coronarium microsymbiont from Sassari, Italy.
Stand Genomic Sci 10, 44.
10.1186/s40793-015-0020-2
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(2015) Degradation of Bunker C Fuel Oil by White-Rot Fungi in Sawdust Cultures Suggests Potential Applications in Bioremediation.
PLoS One 10(6), e0130381.
10.1371/journal.pone.0130381
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(2015) In Silico Analysis of the Metabolic Potential and Niche Specialization of Candidate Phylum "Latescibacteria" (WS3).
PLoS One 10(6), e0127499.
10.1371/journal.pone.0127499
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(2015) Tn-seq of Caulobacter crescentus under uranium stress reveals genes essential for detoxification and stress tolerance.
J Bacteriol .
10.1128/JB.00382-15
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(2015) Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris.
ISME J .
10.1038/ismej.2015.45
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(2015) High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats.
MBio 6(1).
10.1128/mBio.02288-14
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