News & Publications

2018 Publications

Anantharaman, K. et al. (2018) Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle. ISME J . 10.1038/s41396-018-0078-0
More Details

Azad, A. et al. (2018) HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks. Nucleic Acids Res 46(6), e33. 10.1093/nar/gkx1313
More Details

Balasundaram, S. V. et al. (2018) The fungus that came in from the cold: dry rot's pre-adapted ability to invade buildings. ISME J 12(3), 791-801. 10.1038/s41396-017-0006-8
More Details

Beller, H. R. et al. (2018) Discovery of enzymes for toluene synthesis from anoxic microbial communities. Nat Chem Biol . 10.1038/s41589-018-0017-4
More Details

Biswas, R. et al. (2018) Complete Genome Sequence of Thermoanaerobacterium sp. Strain RBIITD, a Butyrate- and Butanol-Producing Thermophile. Genome Announc 6(2). 10.1128/genomeA.01411-17
More Details

Butler, J. B. et al. (2018) Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus. Heredity (Edinb) . 10.1038/s41437-018-0058-1
More Details

Carro, L. et al. (2018) Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential. Sci Rep 8(1), 525. 10.1038/s41598-017-17392-0
More Details

Chen, E. C. H. et al. (2018) High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis. New Phytol . 10.1111/nph.14989
More Details

Chernikova, T. N. et al. (2018) Draft Genome Sequence of Monaibacterium marinum C7(T), Isolated from Seawater from the Menai Straits, Wales, United Kingdom. Genome Announc 6(5). 10.1128/genomeA.01444-17
More Details

Coates, R. C. et al. (2018) An integrated workflow for phenazine-modifying enzyme characterization. J Ind Microbiol Biotechnol . 10.1007/s10295-018-2025-5
More Details

Coradetti, S. T. et al. (2018) Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides. Elife 7. 10.7554/eLife.32110
More Details

de Freitas Pereira, M. et al. (2018) Secretome Analysis from the Ectomycorrhizal Ascomycete Cenococcum geophilum. Front Microbiol 9, 141. 10.3389/fmicb.2018.00141
More Details

Dippel, A. B. et al. (2018) Chemiluminescent Biosensors for Detection of Second Messenger Cyclic di-GMP. ACS Chem Biol . 10.1021/acschembio.7b01019
More Details

Eichorst, S. A. et al. (2018) Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments. Environ Microbiol 20(3), 1041-1063. 10.1111/1462-2920.14043
More Details

Emery, M. et al. (2018) Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization. PLoS Genet 14(3), e1007267. 10.1371/journal.pgen.1007267
More Details

Espinola, F. et al. (2018) Metagenomic Analysis of Subtidal Sediments from Polar and Subpolar Coastal Environments Highlights the Relevance of Anaerobic Hydrocarbon Degradation Processes. Microb Ecol 75(1), 123-139. 10.1007/s00248-017-1028-5
More Details

Evans, J. et al. (2018) Extensive Genetic Diversity is Present within North American Switchgrass Germplasm. Plant Genome 11(1). 10.3835/plantgenome2017.06.0055
More Details

Fleming, E. J. et al. (2018) Insights into the fundamental physiology of the uncultured Fe-oxidizing bacterium Leptothrix ochracea. Appl Environ Microbiol . 10.1128/AEM.02239-17
More Details

Hausmann, B. et al. (2018) Peatland Acidobacteria with a dissimilatory sulfur metabolism. ISME J . 10.1038/s41396-018-0077-1
More Details

Kjaerbolling, I. et al. (2018) Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species. Proc Natl Acad Sci U S A 115(4), E753-E761. 10.1073/pnas.1715954115
More Details

Kliver, S. et al. (2018) Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes. Genes (Basel) 9(4). 10.3390/genes9040185
More Details

Lang, D. et al. (2018) The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution. Plant J 93(3), 515-533. 10.1111/tpj.13801
More Details

Lee, L. L. et al. (2018) Genus-wide assessment of lignocellulose utilization in the extremely thermophilic Caldicellulosiruptor by genomic, pan-genomic and metagenomic analysis. Appl Environ Microbiol . 10.1128/AEM.02694-17
More Details

Levy, A. et al. (2018) Genomic features of bacterial adaptation to plants. Nat Genet 50(1), 138-150. 10.1038/s41588-017-0012-9
More Details

Li, Y. et al. (2018) Proteome and phospholipid alteration reveal metabolic network of Bacillus thuringiensis under triclosan stress. Sci Total Environ 615, 508-516. 10.1016/j.scitotenv.2017.10.004
More Details

Lopez, D. et al. (2018) Genome-Wide Analysis of Corynespora cassiicola Leaf Fall Disease Putative Effectors. Front Microbiol 9, 276. 10.3389/fmicb.2018.00276
More Details

Lopez, G. et al. (2018) Description of Alicyclobacillus montanus sp. nov., a mixotrophic bacterium isolated from acidic hot springs. Int J Syst Evol Microbiol . 10.1099/ijsem.0.002718
More Details

Martino, E. et al. (2018) Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists. New Phytol 217(3), 1213-1229. 10.1111/nph.14974
More Details

Milano, E. R. et al. (2018) Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii. Biotechnol Biofuels 11, 25. 10.1186/s13068-018-1033-z
More Details

Pold, G. et al. (2018) Genome Sequence of Verrucomicrobium sp. Strain GAS474, a Novel Bacterium Isolated from Soil. Genome Announc 6(4). 10.1128/genomeA.01451-17
More Details

Pold, G. et al. (2018) Draft Genome Sequences of Three Strains of a Novel Rhizobiales Species Isolated from Forest Soil. Genome Announc 6(5). 10.1128/genomeA.01452-17
More Details

Probst, A. J. et al. (2018) Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface. Nat Microbiol 3(3), 328-336. 10.1038/s41564-017-0098-y
More Details

Raudabaugh, D. B. et al. (2018) Coniella lustricola, a new species from submerged detritus. Mycological Progress 17(1-2), 191-203. 10.1007/s11557-017-1337-6
More Details

Rodriguez, R. Lm et al. (2018) How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?. Appl Environ Microbiol 84(6). 10.1128/AEM.00014-18
More Details

Sade, N. et al. (2018) Salt tolerance of two perennial grass Brachypodium sylvaticum accessions. Plant Mol Biol 96(3), 305-314. 10.1007/s11103-017-0696-3
More Details

Scott, K. M. et al. (2018) Genomes of ubiquitous marine and hypersaline Hydrogenovibrio, Thiomicrorhabdus, and Thiomicrospira spp. encode a diversity of mechanisms to sustain chemolithoautotrophy in heterogeneous environments. Environ Microbiol . 10.1111/1462-2920.14090
More Details

Seshadri, R. et al. (2018) Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection. Nat Biotechnol . 10.1038/nbt.4110
More Details

Skraban, J. et al. (2018) Draft genome sequence of Chryseobacterium limigenitum SUR2(T) (LMG 28734(T)) isolated from dehydrated sludge. Braz J Microbiol 49(1), 5-6. 10.1016/j.bjm.2017.03.009
More Details

Spriggs, A. et al. (2018) Assembled genomic and tissue-specific transcriptomic data resources for two genetically distinct lines of Cowpea ( Vigna unguiculata (L.) Walp). Gates Open Res 2, 7. 10.12688/gatesopenres.12777.1
More Details

Stein, J. C. et al. (2018) Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nat Genet 50(2), 285-296. 10.1038/s41588-018-0040-0
More Details

Stritt, C. et al. (2018) Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon. Genome Biol Evol 10(1), 304-318. 10.1093/gbe/evx276
More Details

Tas, N. et al. (2018) Landscape topography structures the soil microbiome in arctic polygonal tundra. Nat Commun 9(1), 777. 10.1038/s41467-018-03089-z
More Details

Tsesmetzis, N. et al. (2018) Microbial community analysis of three hydrocarbon reservoir cores provides valuable insights for the assessment of reservoir souring potential. International Biodeterioration & Biodegradation 126, 177-188. 10.1016/j.ibiod.2016.09.002
More Details

Warshan, D. et al. (2018) Genomic changes associated with the evolutionary transitions of Nostoc to a plant symbiont. Mol Biol Evol . 10.1093/molbev/msy029
More Details

West, P. T. et al. (2018) Genome-reconstruction for eukaryotes from complex natural microbial communities. Genome Res 28(4), 569-580. 10.1101/gr.228429.117
More Details

Weston, D. J. et al. (2018) The Sphagnome Project: enabling ecological and evolutionary insights through a genus-level sequencing project. New Phytol 217(1), 16-25. 10.1111/nph.14860
More Details

Wu, G. A. et al. (2018) Genomics of the origin and evolution of Citrus. Nature 554(7692), 311-316. 10.1038/nature25447
More Details

Yang, X. et al. (2018) Amplification and adaptation of centromeric repeats in polyploid switchgrass species. New Phytol . 10.1111/nph.15098
More Details

Yao, Q. et al. (2018) Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil. Nat Ecol Evol 2(3), 499-509. 10.1038/s41559-017-0463-5
More Details

Zhalnina, K. et al. (2018) Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nat Microbiol 3(4), 470-480. 10.1038/s41564-018-0129-3
More Details