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    Maize can produce a cocktail of antibiotics with a handful of enzymes. (Sam Fentress, CC BY-SA 2.0)
    How Maize Makes An Antibiotic Cocktail
    Zealexins are produced in every corn variety and protect maize by fending off fungal and microbial infections using surprisingly few enzymes.

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    The genome of the common fiber vase or Thelephora terrestris was among those used in the study. (Francis Martin)
    From Competition to Cooperation
    By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how saprotrophs have transitioned to the symbiotic lifestyle.

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    Miscanthus grasses. (Roy Kaltschmidt/Berkeley Lab)
    A Grass Model to Help Improve Giant Miscanthus
    The reference genome for M. sinensis, and the associated genomic tools, allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such as sugarcane and sorghum.

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    Poplar (Populus trichocarpa and P. deltoides) grow in the Advanced Plant Phenotyping Laboratory (APPL) at Oak Ridge National Laboratory in Tennessee. Poplar is an important biofuel feedstock, and Populus trichocarpa is the first tree species to have its genome sequenced — a feat accomplished by JGI. (Image courtesy of Oak Ridge National Laboratory, U.S. Dept. of Energy)
    Podcast: Xiaohan Yang on A Plantiful Future
    Building off plant genomics collaborations between the JGI and Oak Ridge National Laboratory, Xiaohan Yang envisions customizing plants for the benefit of human society.

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    Expansin complex with cell wall in background. (Courtesy of Daniel Cosgrove)
    Synthesizing Microbial Expansins with Unusual Activities
    Expansin proteins from diverse microbes have potential uses in deconstructing lignocellulosic biomass for conversion to renewable biofuels, nanocellulosic fibers, and commodity biochemicals.

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    High oleic pennycress. (Courtesy of Ratan Chopra)
    Pennycress – A Solution for Global Food Security, Renewable Energy and Ecosystem Benefits
    Pennycress (Thlaspi arvense) is under development as a winter annual oilseed bioenergy crop. It could produce up to 3 billion gallons of seed oil annually while reducing soil erosion and fertilizer runoff.

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    Artistic interpretation of CheckV assessing virus genome sequences from environmental samples. (Rendered by Zosia Rostomian​, Berkeley Lab)
    An Automated Tool for Assessing Virus Data Quality
    CheckV can be broadly utilized by the research community to gauge virus data quality and will help researchers to follow best practices and guidelines for providing the minimum amount of information for an uncultivated virus genome.

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    Unicellular algae in the Chlorella genus, magnified 1300x. (Andrei Savitsky)
    A One-Stop Shop for Analyzing Algal Genomes
    The PhycoCosm data portal is an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental data.

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    Artistic interpretation of how microbial genome sequences from the GEM catalog can help fill in gaps of knowledge about the microbes that play key roles in the Earth's microbiomes. (Rendered by Zosia Rostomian​, Berkeley Lab)
    Podcast: A Primer on Genome Mining
    In Natural Prodcast: the basics of genome mining, and how JGI researchers conducted it in IMG/ABC on thousands of metagenome-derived genomes for a Nature Biotechnology paper.

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    Scanning electron micrographs of diverse diatoms. (Credits: Diana Sarno, Marina Montresor, Nicole Poulsen, Gerhard Dieckmann)
    Learn About the Approved 2021 Large-Scale CSP Proposals
    A total of 27 proposals have been approved through JGI's annual Community Science Program (CSP) call. For the first time, 63 percent of the accepted proposals come from researchers who have not previously been a principal investigator on an approved JGI proposal.

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    MiddleGaylor Michael Beman UC Merced
    How to Successfully Apply for a CSP Proposal
    Reach out to JGI staff for feedback before submitting a proposal. Be sure to describe in detail what you will do with the data.

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    Click on the image or go here to watch the video "Enriching target populations for genomic analyses using HCR-FISH" from the journal Microbiome describing the research.
    How to Target a Microbial Needle within a Community Haystack
    Enabled by the JGI’s Emerging Technologies Opportunity Program, researchers have developed, tested and deployed a pipeline to first target cells from communities of uncultivated microbes, and then efficiently retrieve and characterize their genomes.

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    Artistic interpretation of how microbial genome sequences from the GEM catalog can help fill in gaps of knowledge about the microbes that play key roles in the Earth's microbiomes. (Rendered by Zosia Rostomian​, Berkeley Lab)
    Uncovering Novel Genomes from Earth’s Microbiomes
    A public repository of 52,515 microbial draft genomes generated from environmental samples around the world, expanding the known diversity of bacteria and archaea by 44%, is now available .

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    Green millet (Setaria viridis) plant collected in the wild. (Courtesy of the Kellogg lab)
    Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
    In Nature Biotechnology, a very high quality reference Setaria viridis genome was sequenced, and for the first time in wild populations, a gene related to seed dispersal was identified.

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    The Brachypodium distachyon-B. stacei-B. hybridum polyploid model complex. (Illustrations credits: Juan Luis Castillo)
    The More the Merrier: Making the Case for Plant Pan-genomes
    Crop breeders have harnessed polyploidy to increase fruit and flower size, and confer stress tolerance traits. Using a Brachypodium model system, researchers have sought to learn the origins, evolution and development of plant polyploids. The work recently appeared in Nature Communications.

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News & Publications
Home › News & Publications › Publications › 2018 Publications

2018 Publications

Aguilar-Pontes, M. V. et al. (2018) The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi. Studies in mycology 91, 61-78. 10.1016/j.simyco.2018.10.001
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Ahrendt, S. R. et al. (2018) Leveraging single-cell genomics to expand the fungal tree of life. Nat Microbiol . 10.1038/s41564-018-0261-0
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Anantharaman, K. et al. (2018) Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle. ISME J . 10.1038/s41396-018-0078-0
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Arnesen, J. A. et al. (2018) Early Diverging Insect-Pathogenic Fungi of the Order Entomophthorales Possess Diverse and Unique Subtilisin-Like Serine Proteases. G3 (Bethesda) 8(10), 3311-3319. 10.1534/g3.118.200656
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Azad, A. et al. (2018) HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks. Nucleic Acids Res 46(6), e33. 10.1093/nar/gkx1313
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Bachy, C. et al. (2018) Transcriptional responses of the marine green alga Micromonas pusilla and an infecting prasinovirus under different phosphate conditions. Environ Microbiol 20(8), 2898-2912. 10.1111/1462-2920.14273
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Bahri, B. A. et al. (2018) Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.). BMC Evol Biol 18(1), 91. 10.1186/s12862-018-1193-2
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Bakermans, C. et al. (2018) Adaptations to marine versus terrestrial low temperature environments as revealed by comparative genomic analyses of the genus Psychrobacter. FEMS Microbiol Ecol 94(7). 10.1093/femsec/fiy102
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Balasundaram, S. V. et al. (2018) The fungus that came in from the cold: dry rot's pre-adapted ability to invade buildings. ISME J 12(3), 791-801. 10.1038/s41396-017-0006-8
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Bell, E. et al. (2018) Biogeochemical Cycling by a Low-Diversity Microbial Community in Deep Groundwater. Front Microbiol 9, 2129. 10.3389/fmicb.2018.02129
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Beller, H. R. et al. (2018) Discovery of enzymes for toluene synthesis from anoxic microbial communities. Nat Chem Biol . 10.1038/s41589-018-0017-4
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Benocci, T. et al. (2018) Enzymatic Adaptation of Podospora anserina to Different Plant Biomass Provides Leads to Optimized Commercial Enzyme Cocktails. Biotechnol J , e1800185. 10.1002/biot.201800185
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Bernhardsgrutter, I. et al. (2018) The multicatalytic compartment of propionyl-CoA synthase sequesters a toxic metabolite. Nat Chem Biol 14(12), 1127-1132. 10.1038/s41589-018-0153-x
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Bhatnagar, J. M. et al. (2018) Litter chemistry influences decomposition through activity of specific microbial functional guilds. Ecological Monographs 88(3), 429-444. 10.1002/ecm.1303/full
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Biswas, R. et al. (2018) Complete Genome Sequence of Thermoanaerobacterium sp. Strain RBIITD, a Butyrate- and Butanol-Producing Thermophile. Genome Announc 6(2). 10.1128/genomeA.01411-17
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Borton, M. A. et al. (2018) Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales. Proc Natl Acad Sci U S A 115(28), E6585-E6594. 10.1073/pnas.1800155115
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Borton, Mikayla A. et al. (2018) Comparative genomics and physiology of the genus Methanohalophilus, a prevalent methanogen in hydraulically fractured shale. Environmental Microbiology 20(12), 4596-4611. 10.1111/1462-2920.14467
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Bourgeois, Y. et al. (2018) Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon. Plant Journal 96(2), 438-451. 10.1111/tpj.14042
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Bryan, A. C. et al. (2018) A Variable Polyglutamine Repeat Affects Subcellular Localization and Regulatory Activity of a Populus ANGUSTIFOLIA Protein. G3 (Bethesda) . 10.1534/g3.118.200188
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Butler, J. B. et al. (2018) Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus. Heredity (Edinb) . 10.1038/s41437-018-0058-1
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Camiolo, S. et al. (2018) An analysis of codon bias in six red yeast species. Yeast . 10.1002/yea.3359
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Cantillo, Angela et al. (2018) Genome Sequences of Actinobacteria from Extreme Environments in Colombia. Microbiology Resource Announcements 7(22), e01384-18. 10.1128/MRA.01384-18
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Cardenas, E. et al. (2018) Effects of timber harvesting on the genetic potential for carbon and nitrogen cycling in five North American forest ecozones. Sci Rep 8(1), 3142. 10.1038/s41598-018-21197-0
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Carella, P. et al. (2018) Phytophthora palmivora establishes tissue-specific intracellular infection structures in the earliest divergent land plant lineage. Proc Natl Acad Sci U S A 115(16), E3846-E3855. 10.1073/pnas.1717900115
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Carro, L. et al. (2018) Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential. Sci Rep 8(1), 525. 10.1038/s41598-017-17392-0
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Chadha, S. et al. (2018) Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships. Fungal Biol Biotechnol 5, 12. 10.1186/s40694-018-0056-3
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Chafee, M. et al. (2018) Recurrent patterns of microdiversity in a temperate coastal marine environment. ISME J 12(1), 237-252. 10.1038/ismej.2017.165
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Chang, J. J. et al. (2018) Biomimetic strategy for constructing Clostridium thermocellum cellulosomal operons in Bacillus subtilis. Biotechnol Biofuels 11, 157. 10.1186/s13068-018-1151-7
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Chang, Ying et al. (2018) Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota. New Phytologist 0(0). 10.1111/nph.15613
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Chen, E. C. H. et al. (2018) High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis. New Phytol . 10.1111/nph.14989
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Cheng, H. et al. (2018) The Biota Project: A Case Study of a Multimedia, Grassroots Approach to Scientific Communication for Engaging Diverse Audiences. Integr Comp Biol 58(6), 1294-1303. 10.1093/icb/icy091
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Chernikova, T. N. et al. (2018) Draft Genome Sequence of Monaibacterium marinum C7(T), Isolated from Seawater from the Menai Straits, Wales, United Kingdom. Genome Announc 6(5). 10.1128/genomeA.01444-17
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Chiang, E. et al. (2018) Verrucomicrobia are prevalent in north-temperate freshwater lakes and display class-level preferences between lake habitats. PLoS One 13(3), e0195112. 10.1371/journal.pone.0195112
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Coates, R. C. et al. (2018) An integrated workflow for phenazine-modifying enzyme characterization. J Ind Microbiol Biotechnol . 10.1007/s10295-018-2025-5
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Coradetti, S. T. et al. (2018) Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides. Elife 7. 10.7554/eLife.32110
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Cox, R. S. et al. (2018) Synthetic Biology Open Language (SBOL) Version 2.2.0. J Integr Bioinform 15(1). 10.1515/jib-2018-0001
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Crits-Christoph, A. et al. (2018) Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis. Nature 558(7710), 440-444. 10.1038/s41586-018-0207-y
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Dalcin Martins, P. et al. (2018) Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems. Microbiome 6(1), 138. 10.1186/s40168-018-0522-4
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Daly, P. et al. (2018) Dichomitus squalens partially tailors its molecular responses to the composition of solid wood. Environ Microbiol . 10.1111/1462-2920.14416
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Daly, P. et al. (2018) Dichomitus squalens partially tailors its molecular responses to the composition of solid wood. Environ Microbiol 20(11), 4141-4156. 10.1111/1462-2920.14416
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de Freitas Pereira, M. et al. (2018) Secretome Analysis from the Ectomycorrhizal Ascomycete Cenococcum geophilum. Front Microbiol 9, 141. 10.3389/fmicb.2018.00141
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Dippel, A. B. et al. (2018) Chemiluminescent Biosensors for Detection of Second Messenger Cyclic di-GMP. ACS Chem Biol . 10.1021/acschembio.7b01019
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Druzhinina, I. S. et al. (2018) Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts. PLoS Genet 14(4), e1007322. 10.1371/journal.pgen.1007322
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Duerkop, B. A. et al. (2018) Murine colitis reveals a disease-associated bacteriophage community. Nat Microbiol . 10.1038/s41564-018-0210-y
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Dunivin, T. K. et al. (2018) Community structure explains antibiotic resistance gene dynamics over a temperature gradient in soil. FEMS Microbiol Ecol 94(3). 10.1093/femsec/fiy016
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Dyksma, S. et al. (2018) Evidence for H2 consumption by uncultured Desulfobacterales in coastal sediments. Environ Microbiol 20(2), 450-461. 10.1111/1462-2920.13880
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Eichorst, S. A. et al. (2018) Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments. Environ Microbiol 20(3), 1041-1063. 10.1111/1462-2920.14043
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Emerson, J. B. et al. (2018) Host-linked soil viral ecology along a permafrost thaw gradient. Nat Microbiol 3(8), 870-880. 10.1038/s41564-018-0190-y
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Emery, M. et al. (2018) Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization. PLoS Genet 14(3), e1007267. 10.1371/journal.pgen.1007267
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Emri, T. et al. (2018) Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance. Studies in mycology 91, 23-36. 10.1016/j.simyco.2018.10.003
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Eng, T. et al. (2018) Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC. Microb Cell Fact 17(1), 159. 10.1186/s12934-018-1006-8
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Espinola, F. et al. (2018) Metagenomic Analysis of Subtidal Sediments from Polar and Subpolar Coastal Environments Highlights the Relevance of Anaerobic Hydrocarbon Degradation Processes. Microb Ecol 75(1), 123-139. 10.1007/s00248-017-1028-5
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Estrada-de Los Santos, P. et al. (2018) Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae. Genes (Basel) 9(8). 10.3390/genes9080389
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Evans, J. et al. (2018) Extensive Genetic Diversity is Present within North American Switchgrass Germplasm. Plant Genome 11(1). 10.3835/plantgenome2017.06.0055
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Filiault, D. L. et al. (2018) The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history. Elife 7. 10.7554/eLife.36426
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Fischer, M. S. et al. (2018) Regulation of Cell-to-Cell Communication and Cell Wall Integrity by a Network of MAP Kinase Pathways and Transcription Factors in Neurospora crassa. Genetics 209(2), 489-506. 10.1534/genetics.118.300904
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Fleming, E. J. et al. (2018) Insights into the fundamental physiology of the uncultured Fe-oxidizing bacterium Leptothrix ochracea. Appl Environ Microbiol . 10.1128/AEM.02239-17
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Ganesh, S. et al. (2018) Single cell genomic and transcriptomic evidence for the use of alternative nitrogen substrates by anammox bacteria. ISME J . 10.1038/s41396-018-0223-9
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Ganesh, S. et al. (2018) Single cell genomic and transcriptomic evidence for the use of alternative nitrogen substrates by anammox bacteria. Isme Journal 12(11), 2706-2722. 10.1038/s41396-018-0223-9
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Gao, J. et al. (2018) Ecosystem Fabrication (EcoFAB) Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions. J Vis Exp (134). 10.3791/57170
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Garcia, S. L. et al. (2018) Model Communities Hint at Promiscuous Metabolic Linkages between Ubiquitous Free-Living Freshwater Bacteria. mSphere 3(3). 10.1128/mSphere.00202-18
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Garsmeur, O. et al. (2018) A mosaic monoploid reference sequence for the highly complex genome of sugarcane. Nat Commun 9(1), 2638. 10.1038/s41467-018-05051-5
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Gluck-Thaler, E. et al. (2018) Specialized plant biochemistry drives gene clustering in fungi. ISME J 12(7), 1694-1705. 10.1038/s41396-018-0075-3
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Gould, B. A. et al. (2018) Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae). BMC Genomics 19(1), 792. 10.1186/s12864-018-5179-7
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Grum-Grzhimaylo, A. A. et al. (2018) The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet. Mol Ecol . 10.1111/mec.14912
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Gryganskyi, A. P. et al. (2018) Phylogenetic and Phylogenomic Definition of Rhizopus Species. G3 (Bethesda) 8(6), 2007-2018. 10.1534/g3.118.200235
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Guo, J. et al. (2018) Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation. Nat Microbiol 3(7), 781-790. 10.1038/s41564-018-0178-7
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Handakumbura, P. P. et al. (2018) SECONDARY WALL ASSOCIATED MYB1 is a positive regulator of secondary cell wall thickening in Brachypodium distachyon and is not found in the Brassicaceae. Plant J . 10.1111/tpj.14047
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Handakumbura, P. P. et al. (2018) SECONDARY WALL ASSOCIATED MYB1 is a positive regulator of secondary cell wall thickening in Brachypodium distachyon and is not found in the Brassicaceae. Plant Journal 96(3), 532-545. 10.1111/tpj.14047
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Harrington, L. B. et al. (2018) Programmed DNA destruction by miniature CRISPR-Cas14 enzymes. Science . 10.1126/science.aav4294
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Hausmann, B. et al. (2018) Peatland Acidobacteria with a dissimilatory sulfur metabolism. ISME J . 10.1038/s41396-018-0077-1
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Hesse, C. et al. (2018) Genome-based evolutionary history of Pseudomonas spp. Environ Microbiol . 10.1111/1462-2920.14130
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Higgins, D. A. et al. (2018) Natural Variation in the Multidrug Efflux Pump SGE1 Underlies Ionic Liquid Tolerance in Yeast. Genetics 210(1), 219-234. 10.1534/genetics.118.301161
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Hon, S. et al. (2018) Expressing the Thermoanaerobacterium saccharolyticum pforA in engineered Clostridium thermocellum improves ethanol production. Biotechnol Biofuels 11, 242. 10.1186/s13068-018-1245-2
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Hori, C. et al. (2018) Multi-omic analyses of extensively decayed Pinus contorta reveal expression of diverse array of lignocellulose degrading enzymes. Appl Environ Microbiol . 10.1128/AEM.01133-18
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Hori, C. et al. (2018) Multi-omic Analyses of Extensively Decayed Pinus contorta Reveal Expression of a Diverse Array of Lignocellulose-Degrading Enzymes. Applied and Environmental Microbiology 84(20), 14. 10.1128/aem.01133-18
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Huang, Y. T. et al. (2018) Genome-based analysis of virulence determinants of a Serratia marcescens strain from soft tissues following a snake bite. Future Microbiol 13, 331-343. 10.2217/fmb-2017-0202
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Huang, Y. T. et al. (2018) Draft genome sequence of carbapenem-resistant Shewanella algae strain AC isolated from small abalone (Haliotis diversicolor). J Glob Antimicrob Resist 14, 65-67. 10.1016/j.jgar.2018.06.005
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Jansson, C. et al. (2018) Climate-smart crops with enhanced photosynthesis. J Exp Bot 69(16), 3801-3809. 10.1093/jxb/ery213
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Jarett, J. K. et al. (2018) Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis. Microbiome 6(1), 161. 10.1186/s40168-018-0539-8
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Jay, Z. J. et al. (2018) Marsarchaeota are an aerobic archaeal lineage abundant in geothermal iron oxide microbial mats. Nat Microbiol 3(6), 732-740. 10.1038/s41564-018-0163-1
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Jayakody, L. N. et al. (2018) Thermochemical wastewater valorization via enhanced microbial toxicity tolerance. Energy & Environmental Science 11(6), 1625-1638. 10.1039/c8ee00460a
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Kappelmann, L. et al. (2018) Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans. ISME J . 10.1038/s41396-018-0242-6
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Khdhiri, M. et al. (2018) Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H-2-oxidation activity measured in three soils exposed to H-2. Soil Biology & Biochemistry 125, 239-243. 10.1016/j.soilbio.2018.07.020
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Khdhiri, Mondher et al. (2018) Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H2-oxidation activity measured in three soils exposed to H2. Soil Biology and Biochemistry 125, 239-243. 10.1016/j.soilbio.2018.07.020
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Kijpornyongpan, T. et al. (2018) Broad genomic sampling reveals a smut pathogenic ancestry of the fungal clade Ustilaginomycotina. Mol Biol Evol . 10.1093/molbev/msy072
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Kimbrel, J. A. et al. (2018) Microbial Community Structure and Functional Potential Along a Hypersaline Gradient. Front Microbiol 9, 1492. 10.3389/fmicb.2018.01492
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Kjaerbolling, I. et al. (2018) Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species. Proc Natl Acad Sci U S A 115(4), E753-E761. 10.1073/pnas.1715954115
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Kleiner, M. et al. (2018) Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities. Proc Natl Acad Sci U S A 115(24), E5576-E5584. 10.1073/pnas.1722325115
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Kliver, S. et al. (2018) Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes. Genes (Basel) 9(4). 10.3390/genes9040185
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Knapp, D. G. et al. (2018) Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi. Sci Rep 8(1), 6321. 10.1038/s41598-018-24686-4
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Kolinko, S. et al. (2018) A bacterial pioneer produces cellulase complexes that persist through community succession. Nat Microbiol 3(1), 99-107. 10.1038/s41564-017-0052-z
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Krassowski, T. et al. (2018) Evolutionary instability of CUG-Leu in the genetic code of budding yeasts. Nat Commun 9(1), 1887. 10.1038/s41467-018-04374-7
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Kroeger, M. E. et al. (2018) New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes. Front Microbiol 9, 1635. 10.3389/fmicb.2018.01635
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Kuang, M. C. et al. (2018) Repeated cis-regulatory tuning of a metabolic bottleneck gene during evolution. Mol Biol Evol . 10.1093/molbev/msy102
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Lang, D. et al. (2018) The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution. Plant J 93(3), 515-533. 10.1111/tpj.13801
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Lee, J. Z. et al. (2018) Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat. PLoS One 13(9), e0202792. 10.1371/journal.pone.0202792
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Lee, L. L. et al. (2018) Genus-wide assessment of lignocellulose utilization in the extremely thermophilic Caldicellulosiruptor by genomic, pan-genomic and metagenomic analysis. Appl Environ Microbiol . 10.1128/AEM.02694-17
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Levy, A. et al. (2018) Genomic features of bacterial adaptation to plants. Nat Genet 50(1), 138-150. 10.1038/s41588-017-0012-9
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Levy, A. et al. (2018) Elucidating Bacterial Gene Functions in the Plant Microbiome. Cell Host Microbe 24(4), 475-485. 10.1016/j.chom.2018.09.005
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