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    A vertical tree stump outdoors with about a dozen shiitake mushrooms sprouting from its surface.
    Tracing the Evolution of Shiitake Mushrooms
    Understanding Lentinula genomes and their evolution could provide strategies for converting plant waste into sugars for biofuel production. Additionally, these fungi play a role in the global carbon cycle.

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    Soil Virus Offers Insight into Maintaining Microorganisms
    Through a collaborative effort, researchers have identified a protein in soil viruses that may promote soil health.

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    Data yielded from RIViT-seq increased the number of sigma factor-gene pairs confirmed in Streptomyces coelicolor from 209 to 399. Here, grey arrows denote previously known regulation and red arrows are regulation identified by RIViT-seq; orange nodes mark sigma factors while gray nodes mark other genes. (Otani, H., Mouncey, N.J. Nat Commun 13, 3502 (2022). https://doi.org/10.1038/s41467-022-31191-w)
    Streamlining Regulon Identification in Bacteria
    Regulons are a group of genes that can be turned on or off by the same regulatory protein. RIViT-seq technology could speed up associating transcription factors with their target genes.

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    The switchgrass diversity panel growing at the Kellogg Biological Station in Michigan. (David Lowry)
    Mapping Switchgrass Traits with Common Gardens
    The combination of field data and genetic information has allowed researchers to associate climate adaptations with switchgrass biology.

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    Artist rendering of genome standards being applied to deciphering the extensive diversity of viruses. (Illustration by Leah Pantea)
    Expanding Metagenomics to Capture Viral Diversity
    Along with highlighting the viruses in a given sample, metagenomics shed light on another key aspect of viruses in the environment — their sheer genetic diversity.

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    Photograph of a stream of diatoms beneath Arctic sea ice.
    Polar Phytoplankton Need Zinc to Cope with the Cold
    As part of a long-term collaboration with the JGI Algal Program, researchers studying function and activity of phytoplankton genes in polar waters have found that these algae rely on dissolved zinc to photosynthesize.

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    Silver Age of GOLD Introduces New Features
    The Genomes OnLine Database makes curated microbiome metadata that follows community standards freely available and enables large-scale comparative genomics analysis initiatives.

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    Graphical overview of the RNA Virus MetaTranscriptomes Project. (Courtesy of Simon Roux)
    A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
    Researchers combed through more than 5,000 data sets of RNA sequences generated from diverse environmental samples around the world, resulting in a five-fold increase of RNA virus diversity.

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    HPCwire Editor's Choice Award (logo crop) for Best Use of HPC in the Life Sciences
    JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
    The HPCwire Editors Choice Award for Best Use of HPC in Life Sciences went to the Berkeley Lab team comprised of JGI and ExaBiome Project team, supported by the DOE Exascale Computing Project for MetaHipMer, an end-to-end genome assembler that supports “an unprecedented assembly of environmental microbiomes.”

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    Digital ID card with six headshots reads: Congratulations to our 2022 Function Genomics recipients!
    Final Round of 2022 CSP Functional Genomics Awardees
    Meet the final six researchers whose proposals were selected for the 2022 Community Science Program Functional Genomics call.

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    CSP New Investigators FY23 R1
    JGI Announces First Round of 2023 New Investigator Awardees
    Twice each year we look for novel research projects aligned with DOE missions and from PIs who have not led any previously-accepted proposals through the CSP New Investigator call.

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    screencap from Amundson and Wilkins subsurface microbiome video
    Digging into Microbial Ecosystems Deep Underground
    JGI users and microbiome researchers at Colorado State University have many questions about the microbial communities deep underground, including the role viral infection may play in other natural ecosystems.

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    2022 JGI-UC Merced interns (Thor Swift/Berkeley Lab)
    Exploring Possibilities: 2022 JGI-UC Merced Interns
    The 2022 UC Merced intern cohort share how their summer internship experiences have influenced their careers in science.

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    Using Team Science to Build Communities Around Data
    As the data portals grow and evolve, the research communities further expand around them. But with two projects, communities are forming to generate high quality genomes to benefit researchers.

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    Cow Rumen and the Early Days of Metagenomics
    Tracing a cow rumen dataset from the lab to material for a hands-on undergraduate research course at CSU-San Marcos that has since expanded into three other universities.

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News & Publications
Home › News & Publications › Publications › 2018 Publications

2018 Publications

Aguilar-Pontes, M. V. et al. (2018) The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi. Studies in mycology 91, 61-78. 10.1016/j.simyco.2018.10.001
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Ahrendt, S. R. et al. (2018) Leveraging single-cell genomics to expand the fungal tree of life. Nat Microbiol . 10.1038/s41564-018-0261-0
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Anantharaman, K. et al. (2018) Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle. ISME J . 10.1038/s41396-018-0078-0
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Arnesen, J. A. et al. (2018) Early Diverging Insect-Pathogenic Fungi of the Order Entomophthorales Possess Diverse and Unique Subtilisin-Like Serine Proteases. G3 (Bethesda) 8(10), 3311-3319. 10.1534/g3.118.200656
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Azad, A. et al. (2018) HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks. Nucleic Acids Res 46(6), e33. 10.1093/nar/gkx1313
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Bachy, C. et al. (2018) Transcriptional responses of the marine green alga Micromonas pusilla and an infecting prasinovirus under different phosphate conditions. Environ Microbiol 20(8), 2898-2912. 10.1111/1462-2920.14273
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Bahri, B. A. et al. (2018) Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.). BMC Evol Biol 18(1), 91. 10.1186/s12862-018-1193-2
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Bakermans, C. et al. (2018) Adaptations to marine versus terrestrial low temperature environments as revealed by comparative genomic analyses of the genus Psychrobacter. FEMS Microbiol Ecol 94(7). 10.1093/femsec/fiy102
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Balasundaram, S. V. et al. (2018) The fungus that came in from the cold: dry rot's pre-adapted ability to invade buildings. ISME J 12(3), 791-801. 10.1038/s41396-017-0006-8
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Bell, E. et al. (2018) Biogeochemical Cycling by a Low-Diversity Microbial Community in Deep Groundwater. Front Microbiol 9, 2129. 10.3389/fmicb.2018.02129
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Beller, H. R. et al. (2018) Discovery of enzymes for toluene synthesis from anoxic microbial communities. Nat Chem Biol . 10.1038/s41589-018-0017-4
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Benocci, T. et al. (2018) Enzymatic Adaptation of Podospora anserina to Different Plant Biomass Provides Leads to Optimized Commercial Enzyme Cocktails. Biotechnol J , e1800185. 10.1002/biot.201800185
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Bernhardsgrutter, I. et al. (2018) The multicatalytic compartment of propionyl-CoA synthase sequesters a toxic metabolite. Nat Chem Biol 14(12), 1127-1132. 10.1038/s41589-018-0153-x
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Bhatnagar, J. M. et al. (2018) Litter chemistry influences decomposition through activity of specific microbial functional guilds. Ecological Monographs 88(3), 429-444. 10.1002/ecm.1303/full
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Biswas, R. et al. (2018) Complete Genome Sequence of Thermoanaerobacterium sp. Strain RBIITD, a Butyrate- and Butanol-Producing Thermophile. Genome Announc 6(2). 10.1128/genomeA.01411-17
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Borton, M. A. et al. (2018) Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales. Proc Natl Acad Sci U S A 115(28), E6585-E6594. 10.1073/pnas.1800155115
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Borton, Mikayla A. et al. (2018) Comparative genomics and physiology of the genus Methanohalophilus, a prevalent methanogen in hydraulically fractured shale. Environmental Microbiology 20(12), 4596-4611. 10.1111/1462-2920.14467
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Bourgeois, Y. et al. (2018) Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon. Plant Journal 96(2), 438-451. 10.1111/tpj.14042
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Bryan, A. C. et al. (2018) A Variable Polyglutamine Repeat Affects Subcellular Localization and Regulatory Activity of a Populus ANGUSTIFOLIA Protein. G3 (Bethesda) . 10.1534/g3.118.200188
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Butler, J. B. et al. (2018) Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus. Heredity (Edinb) . 10.1038/s41437-018-0058-1
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Camiolo, S. et al. (2018) An analysis of codon bias in six red yeast species. Yeast . 10.1002/yea.3359
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Cantillo, Angela et al. (2018) Genome Sequences of Actinobacteria from Extreme Environments in Colombia. Microbiology Resource Announcements 7(22), e01384-18. 10.1128/MRA.01384-18
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Cardenas, E. et al. (2018) Effects of timber harvesting on the genetic potential for carbon and nitrogen cycling in five North American forest ecozones. Sci Rep 8(1), 3142. 10.1038/s41598-018-21197-0
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Carella, P. et al. (2018) Phytophthora palmivora establishes tissue-specific intracellular infection structures in the earliest divergent land plant lineage. Proc Natl Acad Sci U S A 115(16), E3846-E3855. 10.1073/pnas.1717900115
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Carro, L. et al. (2018) Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential. Sci Rep 8(1), 525. 10.1038/s41598-017-17392-0
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Chadha, S. et al. (2018) Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships. Fungal Biol Biotechnol 5, 12. 10.1186/s40694-018-0056-3
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Chafee, M. et al. (2018) Recurrent patterns of microdiversity in a temperate coastal marine environment. ISME J 12(1), 237-252. 10.1038/ismej.2017.165
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Chang, J. J. et al. (2018) Biomimetic strategy for constructing Clostridium thermocellum cellulosomal operons in Bacillus subtilis. Biotechnol Biofuels 11, 157. 10.1186/s13068-018-1151-7
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Chang, Ying et al. (2018) Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota. New Phytologist 0(0). 10.1111/nph.15613
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Chen, E. C. H. et al. (2018) High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis. New Phytol . 10.1111/nph.14989
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Cheng, H. et al. (2018) The Biota Project: A Case Study of a Multimedia, Grassroots Approach to Scientific Communication for Engaging Diverse Audiences. Integr Comp Biol 58(6), 1294-1303. 10.1093/icb/icy091
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Chernikova, T. N. et al. (2018) Draft Genome Sequence of Monaibacterium marinum C7(T), Isolated from Seawater from the Menai Straits, Wales, United Kingdom. Genome Announc 6(5). 10.1128/genomeA.01444-17
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Chiang, E. et al. (2018) Verrucomicrobia are prevalent in north-temperate freshwater lakes and display class-level preferences between lake habitats. PLoS One 13(3), e0195112. 10.1371/journal.pone.0195112
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Coates, R. C. et al. (2018) An integrated workflow for phenazine-modifying enzyme characterization. J Ind Microbiol Biotechnol . 10.1007/s10295-018-2025-5
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Coradetti, S. T. et al. (2018) Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides. Elife 7. 10.7554/eLife.32110
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Cox, R. S. et al. (2018) Synthetic Biology Open Language (SBOL) Version 2.2.0. J Integr Bioinform 15(1). 10.1515/jib-2018-0001
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Crits-Christoph, A. et al. (2018) Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis. Nature 558(7710), 440-444. 10.1038/s41586-018-0207-y
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Dalcin Martins, P. et al. (2018) Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems. Microbiome 6(1), 138. 10.1186/s40168-018-0522-4
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Daly, P. et al. (2018) Dichomitus squalens partially tailors its molecular responses to the composition of solid wood. Environ Microbiol . 10.1111/1462-2920.14416
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Daly, P. et al. (2018) Dichomitus squalens partially tailors its molecular responses to the composition of solid wood. Environ Microbiol 20(11), 4141-4156. 10.1111/1462-2920.14416
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de Freitas Pereira, M. et al. (2018) Secretome Analysis from the Ectomycorrhizal Ascomycete Cenococcum geophilum. Front Microbiol 9, 141. 10.3389/fmicb.2018.00141
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Dippel, A. B. et al. (2018) Chemiluminescent Biosensors for Detection of Second Messenger Cyclic di-GMP. ACS Chem Biol . 10.1021/acschembio.7b01019
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Druzhinina, I. S. et al. (2018) Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts. PLoS Genet 14(4), e1007322. 10.1371/journal.pgen.1007322
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Duerkop, B. A. et al. (2018) Murine colitis reveals a disease-associated bacteriophage community. Nat Microbiol . 10.1038/s41564-018-0210-y
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Dunivin, T. K. et al. (2018) Community structure explains antibiotic resistance gene dynamics over a temperature gradient in soil. FEMS Microbiol Ecol 94(3). 10.1093/femsec/fiy016
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Dyksma, S. et al. (2018) Evidence for H2 consumption by uncultured Desulfobacterales in coastal sediments. Environ Microbiol 20(2), 450-461. 10.1111/1462-2920.13880
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Eichorst, S. A. et al. (2018) Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments. Environ Microbiol 20(3), 1041-1063. 10.1111/1462-2920.14043
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Emerson, J. B. et al. (2018) Host-linked soil viral ecology along a permafrost thaw gradient. Nat Microbiol 3(8), 870-880. 10.1038/s41564-018-0190-y
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Emery, M. et al. (2018) Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization. PLoS Genet 14(3), e1007267. 10.1371/journal.pgen.1007267
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Emri, T. et al. (2018) Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance. Studies in mycology 91, 23-36. 10.1016/j.simyco.2018.10.003
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Eng, T. et al. (2018) Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC. Microb Cell Fact 17(1), 159. 10.1186/s12934-018-1006-8
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Espinola, F. et al. (2018) Metagenomic Analysis of Subtidal Sediments from Polar and Subpolar Coastal Environments Highlights the Relevance of Anaerobic Hydrocarbon Degradation Processes. Microb Ecol 75(1), 123-139. 10.1007/s00248-017-1028-5
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Estrada-de Los Santos, P. et al. (2018) Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae. Genes (Basel) 9(8). 10.3390/genes9080389
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Evans, J. et al. (2018) Extensive Genetic Diversity is Present within North American Switchgrass Germplasm. Plant Genome 11(1). 10.3835/plantgenome2017.06.0055
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Filiault, D. L. et al. (2018) The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history. Elife 7. 10.7554/eLife.36426
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Fischer, M. S. et al. (2018) Regulation of Cell-to-Cell Communication and Cell Wall Integrity by a Network of MAP Kinase Pathways and Transcription Factors in Neurospora crassa. Genetics 209(2), 489-506. 10.1534/genetics.118.300904
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Fleming, E. J. et al. (2018) Insights into the fundamental physiology of the uncultured Fe-oxidizing bacterium Leptothrix ochracea. Appl Environ Microbiol . 10.1128/AEM.02239-17
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Ganesh, S. et al. (2018) Single cell genomic and transcriptomic evidence for the use of alternative nitrogen substrates by anammox bacteria. ISME J . 10.1038/s41396-018-0223-9
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Ganesh, S. et al. (2018) Single cell genomic and transcriptomic evidence for the use of alternative nitrogen substrates by anammox bacteria. Isme Journal 12(11), 2706-2722. 10.1038/s41396-018-0223-9
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Gao, J. et al. (2018) Ecosystem Fabrication (EcoFAB) Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions. J Vis Exp (134). 10.3791/57170
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Garcia, S. L. et al. (2018) Model Communities Hint at Promiscuous Metabolic Linkages between Ubiquitous Free-Living Freshwater Bacteria. mSphere 3(3). 10.1128/mSphere.00202-18
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Garsmeur, O. et al. (2018) A mosaic monoploid reference sequence for the highly complex genome of sugarcane. Nat Commun 9(1), 2638. 10.1038/s41467-018-05051-5
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Gluck-Thaler, E. et al. (2018) Specialized plant biochemistry drives gene clustering in fungi. ISME J 12(7), 1694-1705. 10.1038/s41396-018-0075-3
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Gould, B. A. et al. (2018) Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae). BMC Genomics 19(1), 792. 10.1186/s12864-018-5179-7
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Grum-Grzhimaylo, A. A. et al. (2018) The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet. Mol Ecol . 10.1111/mec.14912
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Gryganskyi, A. P. et al. (2018) Phylogenetic and Phylogenomic Definition of Rhizopus Species. G3 (Bethesda) 8(6), 2007-2018. 10.1534/g3.118.200235
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Guo, J. et al. (2018) Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation. Nat Microbiol 3(7), 781-790. 10.1038/s41564-018-0178-7
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Handakumbura, P. P. et al. (2018) SECONDARY WALL ASSOCIATED MYB1 is a positive regulator of secondary cell wall thickening in Brachypodium distachyon and is not found in the Brassicaceae. Plant J 96(3), 532-545. 10.1111/tpj.14047
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Harrington, L. B. et al. (2018) Programmed DNA destruction by miniature CRISPR-Cas14 enzymes. Science . 10.1126/science.aav4294
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Hausmann, B. et al. (2018) Peatland Acidobacteria with a dissimilatory sulfur metabolism. ISME J . 10.1038/s41396-018-0077-1
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Hesse, C. et al. (2018) Genome-based evolutionary history of Pseudomonas spp. Environ Microbiol . 10.1111/1462-2920.14130
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Higgins, D. A. et al. (2018) Natural Variation in the Multidrug Efflux Pump SGE1 Underlies Ionic Liquid Tolerance in Yeast. Genetics 210(1), 219-234. 10.1534/genetics.118.301161
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Hon, S. et al. (2018) Expressing the Thermoanaerobacterium saccharolyticum pforA in engineered Clostridium thermocellum improves ethanol production. Biotechnol Biofuels 11, 242. 10.1186/s13068-018-1245-2
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Hori, C. et al. (2018) Multi-omic analyses of extensively decayed Pinus contorta reveal expression of diverse array of lignocellulose degrading enzymes. Appl Environ Microbiol . 10.1128/AEM.01133-18
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Hori, C. et al. (2018) Multi-omic Analyses of Extensively Decayed Pinus contorta Reveal Expression of a Diverse Array of Lignocellulose-Degrading Enzymes. Applied and Environmental Microbiology 84(20), 14. 10.1128/aem.01133-18
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Huang, Y. T. et al. (2018) Genome-based analysis of virulence determinants of a Serratia marcescens strain from soft tissues following a snake bite. Future Microbiol 13, 331-343. 10.2217/fmb-2017-0202
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Huang, Y. T. et al. (2018) Draft genome sequence of carbapenem-resistant Shewanella algae strain AC isolated from small abalone (Haliotis diversicolor). J Glob Antimicrob Resist 14, 65-67. 10.1016/j.jgar.2018.06.005
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Jansson, C. et al. (2018) Climate-smart crops with enhanced photosynthesis. J Exp Bot 69(16), 3801-3809. 10.1093/jxb/ery213
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Jarett, J. K. et al. (2018) Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis. Microbiome 6(1), 161. 10.1186/s40168-018-0539-8
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Jay, Z. J. et al. (2018) Marsarchaeota are an aerobic archaeal lineage abundant in geothermal iron oxide microbial mats. Nat Microbiol 3(6), 732-740. 10.1038/s41564-018-0163-1
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Jayakody, L. N. et al. (2018) Thermochemical wastewater valorization via enhanced microbial toxicity tolerance. Energy & Environmental Science 11(6), 1625-1638. 10.1039/c8ee00460a
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Kappelmann, L. et al. (2018) Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans. ISME J . 10.1038/s41396-018-0242-6
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Khdhiri, M. et al. (2018) Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H-2-oxidation activity measured in three soils exposed to H-2. Soil Biology & Biochemistry 125, 239-243. 10.1016/j.soilbio.2018.07.020
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Kijpornyongpan, T. et al. (2018) Broad genomic sampling reveals a smut pathogenic ancestry of the fungal clade Ustilaginomycotina. Mol Biol Evol . 10.1093/molbev/msy072
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Kimbrel, J. A. et al. (2018) Microbial Community Structure and Functional Potential Along a Hypersaline Gradient. Front Microbiol 9, 1492. 10.3389/fmicb.2018.01492
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Kjaerbolling, I. et al. (2018) Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species. Proc Natl Acad Sci U S A 115(4), E753-E761. 10.1073/pnas.1715954115
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Kleiner, M. et al. (2018) Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities. Proc Natl Acad Sci U S A 115(24), E5576-E5584. 10.1073/pnas.1722325115
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Kliver, S. et al. (2018) Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes. Genes (Basel) 9(4). 10.3390/genes9040185
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Knapp, D. G. et al. (2018) Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi. Sci Rep 8(1), 6321. 10.1038/s41598-018-24686-4
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Kolinko, S. et al. (2018) A bacterial pioneer produces cellulase complexes that persist through community succession. Nat Microbiol 3(1), 99-107. 10.1038/s41564-017-0052-z
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Krassowski, T. et al. (2018) Evolutionary instability of CUG-Leu in the genetic code of budding yeasts. Nat Commun 9(1), 1887. 10.1038/s41467-018-04374-7
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Kroeger, M. E. et al. (2018) New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes. Front Microbiol 9, 1635. 10.3389/fmicb.2018.01635
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Kuang, M. C. et al. (2018) Repeated cis-regulatory tuning of a metabolic bottleneck gene during evolution. Mol Biol Evol . 10.1093/molbev/msy102
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Lang, D. et al. (2018) The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution. Plant J 93(3), 515-533. 10.1111/tpj.13801
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Lee, J. Z. et al. (2018) Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat. PLoS One 13(9), e0202792. 10.1371/journal.pone.0202792
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Lee, L. L. et al. (2018) Genus-wide assessment of lignocellulose utilization in the extremely thermophilic Caldicellulosiruptor by genomic, pan-genomic and metagenomic analysis. Appl Environ Microbiol . 10.1128/AEM.02694-17
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Levy, A. et al. (2018) Genomic features of bacterial adaptation to plants. Nat Genet 50(1), 138-150. 10.1038/s41588-017-0012-9
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Levy, A. et al. (2018) Elucidating Bacterial Gene Functions in the Plant Microbiome. Cell Host Microbe 24(4), 475-485. 10.1016/j.chom.2018.09.005
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Lewin, H. A. et al. (2018) Earth BioGenome Project: Sequencing life for the future of life. Proc Natl Acad Sci U S A 115(17), 4325-4333. 10.1073/pnas.1720115115
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Li, G. et al. (2018) Overexpression of a rice BAHD acyltransferase gene in switchgrass (Panicum virgatum L.) enhances saccharification. BMC Biotechnol 18(1), 54. 10.1186/s12896-018-0464-8
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Li, Y. et al. (2018) Proteome and phospholipid alteration reveal metabolic network of Bacillus thuringiensis under triclosan stress. Sci Total Environ 615, 508-516. 10.1016/j.scitotenv.2017.10.004
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Lin, H. et al. (2018) Combining Hadoop with MPI to Solve Metagenomics Problems that are both Data- and Compute-intensive. International Journal of Parallel Programming 46(4), 762-775. 10.1007/s10766-017-0524-z
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Linz, A. M. et al. (2018) Freshwater carbon and nutrient cycles revealed through reconstructed population genomes. Peerj 6, 24. 10.7717/peerj.6075
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Looney, B. P. et al. (2018) Russulaceae: a new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates. New Phytol 218(1), 54-65. 10.1111/nph.15001
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Lopez, D. et al. (2018) Genome-Wide Analysis of Corynespora cassiicola Leaf Fall Disease Putative Effectors. Front Microbiol 9, 276. 10.3389/fmicb.2018.00276
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Lopez, G. et al. (2018) Description of Alicyclobacillus montanus sp. nov., a mixotrophic bacterium isolated from acidic hot springs. Int J Syst Evol Microbiol . 10.1099/ijsem.0.002718
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