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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … paper. Auspice Statements Including appropriate tracking numbers is critical to facilitating the tracking of …

And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … is usually going to be through synthetic biology or genetic engineering. But I think from what I’ve read you’ve … biosynthetic gene clusters can be controversial. People use cryptic, or silent, or hidden, obscured. But mostly it means …

… a class of natural product with a really cool chemical structure. We try to explain it, but it’s chemistry, so I … surprise. So total, and different people have different numbers, but in general, an authoritative number for total … But today, you have so many other say morphological, genetic, you know say sugar, lipid composition – so I think …

… to regulate Earth's carbon balance, to exploring the genetic basis of how plants have naturally adapted to varied … … GENESPACE tracks regions of interest and gene copy number variation across multiple genomes. It provides … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

And I really dove into microbial physiology and microbial genetics, and really away from chemistry and synthesizing … “tail of the acyl homoserine lactone” can have different structures, and that is akin to what you’re referring to … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … so no programming knowledge and no dedicated compute infrastructure is required to perform computational analysis. …

ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … a community effort of putting together the natural product structures that are known. I forget how many structures are …

So, I’ve always known Roger as an expert in natural product structure elucidation, but more recently, he’s been leading … just want to say thanks to everyone listening. Our download numbers keep going up, which continues to surprise and amuse … biosynthetic gene clusters represent this untapped and cryptic world of new chemistry, which we can discover.” But …

… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … but not limited to, publication or citation of accession numbers in a peer-reviewed journal, or any public deposition …

… of it. So it wasn’t only chemistry or only biochemistry or genetics. It was also ecology. It was also evolution. It was … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … side of things to really start to be able to identify cryptic gene clusters and what their products are? NADINE …