2003 Publications

Azumi, K. et al. (2003) Genomic analysis of immunity in a Urochordate and the emergence of the vertebrate immune system: "waiting for Godot". Immunogenetics 55(8), 570-581. Doi 10.1007/S00251-003-0606-5
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Boffelli, D. et al. (2003) Phylogenetic shadowing of primate sequences to find functional regions of the human genome. Science 299(5611), 1391-1394. Doi 10.1126/Science.1081331
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Bray, N. et al. (2003) Avid: A Global Alignment Program. Genome Research 13(1), 97-102. Doi 10.1101/Gr.789803
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Chain, P. et al. (2003) Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea. Journal of Bacteriology 185(9), 2759-2773. Doi 10.1128/Jb.185.9.2759-2773.2003
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Cheng, J. F. et al. (2003) Comparative and functional analysis of cardiovascular-related genes. Pharmacogenomics 4(5), 571-582. Doi 10.1517/Phgs.4.5.571.23794
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Couronne, O. et al. (2003) Strategies and tools for whole-genome alignments. Genome Research 13(1), 73-80. Doi 10.1101/Gr.762503
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Dubchak, I. et al. (2003) Multi-species sequence comparison: the next frontier in genome annotation. Genome Biology 4(12). Artn 122 Doi 10.1186/Gb-2003-4-12-122
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Feil, H. et al. (2003) Site-directed disruption of the fimA and fimF fimbrial genes of Xylella fastidiosa. Phytopathology 93(6), 675-682. Doi 10.1094/Phyto.2003.93.6.675
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Frazer, K. A. et al. (2003) Cross-species sequence comparisons: A review of methods and available resources. Genome Research 13(1), 1-12. Doi 10.1101/Gr.222003
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Gibson-Brown, J. J. et al. (2003) A proposal to sequence the amphioxus genome submitted to the joint genome institute of the US department of energy. Journal of Experimental Zoology Part B-Molecular and Developmental Evolution 300B(1), 5-22. Doi 10.1002/Jez.B.00042
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Grogan, J. L. et al. (2003) Basal chromatin modification at the IL-4 gene in helper T cells. Journal of Immunology 171(12), 6672-6679.
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Grossman, A. R. et al. (2003) Chlamydomonas reinhardtii at the crossroads of genomics. Eukaryotic Cell 2(6), 1137-1150. Doi 10.1128/Ec.2.6.1137-1150.2003
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Hallam, S. J. et al. (2003) Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea. Applied and Environmental Microbiology 69(9), 5483-5491. Doi 10.1128/Aem.69.9.5483-5491.2003
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Huby, T. et al. (2003) Regulation of the expression of the apolipoprotein(a) gene - Evidence for a regulatory role of the 5 ' distal apolipoprotein(a) transcription control region enhancer in yeast artificial chromosome transgenic mice. Arteriosclerosis Thrombosis and Vascular Biology 23(9), 1633-1639. Doi 10.1161/01.Atv.0000084637.01883.Ca
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Ishida, T. et al. (2003) Endothelial lipase is a major determinant of HDL level. Journal of Clinical Investigation 111(3), 347-355. Doi 10.1172/Jci200316306
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Murphy, M. B. et al. (2003) An improved method for the in vitro evolution of aptamers and applications in protein detection and purification. Nucleic Acids Research 31(18). ARTN e110 DOI 10.1093/nar/gng110
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Nardi, F. et al. (2003) Hexapod origins: Monophyletic or paraphyletic?. Science 299(5614), 1887-1889. Doi 10.1126/Science.1078607
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Nardi, F. et al. (2003) Response to comment on "Hexapod origins: Monophyletic or paraphyletic?". Science 301(5639).
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Nobrega, M. A. et al. (2003) Scanning human gene deserts for long-range enhancers. Science 302(5644), 413-413. Doi 10.1126/Science.1088328
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Palenik, B. et al. (2003) The genome of a motile marine Synechococcus. Nature 424(6952), 1037-1042. Doi 10.1038/Nature01943
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Passamonti, M. et al. (2003) Molecular evolution and recombination in gender-associated mitochondrial DNAs of the manila clam Tapes philippinarum. Genetics 164(2), 603-611.
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Pennacchio, L. A. et al. (2003) Human-mouse comparative genomics: successes and failures to reveal functional regions of the human genome. Cold Spring Harb Symp Quant Biol 68, 303-9.
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Pennacchio, L. A. et al. (2003) Comparative genomic tools and databases: providing insights into the human genome. Journal of Clinical Investigation 111(8), 1099-1106. Doi 10.1172/Jci200317842
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Pennacchio, L. A. et al. (2003) Apolipoprotein A5, a newly identified gene that affects plasma triglyceride levels in humans and mice. Arteriosclerosis Thrombosis and Vascular Biology 23(4), 529-534. Doi 10.1161/01.Atv.0000054194.78240.45
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Pennacchio, L. A. et al. (2003) Human-mouse comparative genomics: Successes and failures to reveal functional regions of the human genome. Cold Spring Harbor Symposia on Quantitative Biology 68, 303-309. Doi 10.1101/Sqb.2003.68.303
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Pennacchio, L. A. et al. (2003) Insights from human/mouse genome comparisons. Mammalian Genome 14(7), 429-436. Doi 10.1007/S00335-002-4001-1
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Rocap, G. et al. (2003) Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature 424(6952), 1042-1047. Doi 10.1038/Nature01947
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Santini, S. et al. (2003) Evolutionary conservation of regulatory elements in vertebrate Hox gene clusters. Genome Research 13(6), 1111-1122. Doi 10.1101/Gr.700503
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Satou, Y. et al. (2003) A genomewide survey of developmentally relevant genes in Ciona intestinalis - I. Genes for bHLH transcription factors. Development Genes and Evolution 213(5-6), 213-221. Doi 10.1007/S00427-003-0319-7
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Saunders, N. F. W. et al. (2003) Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii. Genome Research 13(7), 1580-1588. Doi 10.1101/Gr.1180903
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Shen, X. et al. (2003) Genome-wide examination of myoblast cell cycle withdrawal during differentiation. Developmental Dynamics 226(1), 128-138. Doi 10.1002/Dvdy.10200
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Terajima, D. et al. (2003) Identification of candidate genes encoding the core components of the cell death machinery in the Ciona intestinalis genome. Cell Death and Differentiation 10(6), 749-753. Doi 10.1038/Sj.Cdd.4401223
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Vu-Dac, N. et al. (2003) Apolipoprotein A5, a crucial determinant of plasma triglyceride levels, is highly responsive to peroxisome proliferator-activated receptor alpha activators. Journal of Biological Chemistry 278(20), 17982-17985. Doi 10.1074/Jbc.M212191200
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Wada, S. et al. (2003) A genomewide survey of developmentally relevant genes in Ciona intestinalis - II. Genes for homeobox transcription factors. Development Genes and Evolution 213(5-6), 222-234. Doi 10.1007/S00427-003-0321-0
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Yagi, K. et al. (2003) A genomewide survey of developmentally relevant genes in Ciona intestinalis - III. Genes for Fox, ETS, nuclear receptors and NF kappa B. Development Genes and Evolution 213(5-6), 235-244. Doi 10.1007/S00427-003-0322-Z
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