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    Data yielded from RIViT-seq increased the number of sigma factor-gene pairs confirmed in Streptomyces coelicolor from 209 to 399. Here, grey arrows denote previously known regulation and red arrows are regulation identified by RIViT-seq; orange nodes mark sigma factors while gray nodes mark other genes. (Otani, H., Mouncey, N.J. Nat Commun 13, 3502 (2022). https://doi.org/10.1038/s41467-022-31191-w)
    Streamlining Regulon Identification in Bacteria
    Regulons are a group of genes that can be turned on or off by the same regulatory protein. RIViT-seq technology could speed up associating transcription factors with their target genes.

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    (PXFuel)
    Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
    In a special issue of the journal Synthetic Biology, JGI scientific users share how they’ve worked with the JGI DNA Synthesis Science Program and what they’ve discovered through their collaborations.

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    A genetic element that generates targeted mutations, called diversity-generating retroelements (DGRs), are found in viruses, as well as bacteria and archaea. Most DGRs found in viruses appear to be in their tail fibers. These tail fibers – signified in the cartoon by the blue virus’ downward pointing ‘arms’— allow the virus to attach to one cell type (red), but not the other (purple). DGRs mutate these ‘arms,’ giving the virus opportunities to switch to different prey, like the purple cell. (Courtesy of Blair Paul)
    A Natural Mechanism Can Turbocharge Viral Evolution
    A team has discovered that diversity generating retroelements (DGRs) are not only widespread, but also surprisingly active. In viruses, DGRs appear to generate diversity quickly, allowing these viruses to target new microbial prey.

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    Photograph of a stream of diatoms beneath Arctic sea ice.
    Polar Phytoplankton Need Zinc to Cope with the Cold
    As part of a long-term collaboration with the JGI Algal Program, researchers studying function and activity of phytoplankton genes in polar waters have found that these algae rely on dissolved zinc to photosynthesize.

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    This data image shows the monthly average sea surface temperature for May 2015. Between 2013 and 2016, a large mass of unusually warm ocean water--nicknamed the blob--dominated the North Pacific, indicated here by red, pink, and yellow colors signifying temperatures as much as three degrees Celsius (five degrees Fahrenheit) higher than average. Data are from the NASA Multi-scale Ultra-high Resolution Sea Surface Temperature (MUR SST) Analysis product. (Courtesy NASA Physical Oceanography Distributed Active Archive Center)
    When “The Blob” Made It Hotter Under the Water
    Researchers tracked the impact of a large-scale heatwave event in the ocean known as “The Blob” as part of an approved proposal through the Community Science Program.

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    A plantation of poplar trees. (David Gilbert)
    Genome Insider podcast: THE Bioenergy Tree
    The US Department of Energy’s favorite tree is poplar. In this episode, hear from ORNL scientists who have uncovered remarkable genetic secrets that bring us closer to making poplar an economical and sustainable source of energy and materials.

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    HPCwire Editor's Choice Award (logo crop) for Best Use of HPC in the Life Sciences
    JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
    The HPCwire Editors Choice Award for Best Use of HPC in Life Sciences went to the Berkeley Lab team comprised of JGI and ExaBiome Project team, supported by the DOE Exascale Computing Project for MetaHipMer, an end-to-end genome assembler that supports “an unprecedented assembly of environmental microbiomes.”

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    With a common set of "baseline metadata," JGI users can more easily access public data sets. (Steve Wilson)
    A User-Centered Approach to Accessing JGI Data
    Reflecting a structural shift in data access, the JGI Data Portal offers a way for users to more easily access public data sets through a common set of metadata.

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    Phytozome portal collage
    A More Intuitive Phytozome Interface
    Phytozome v13 now hosts upwards of 250 plant genomes and provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces they have come to rely on, with a more intuitive interface.

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    screencap from Amundson and Wilkins subsurface microbiome video
    Digging into Microbial Ecosystems Deep Underground
    JGI users and microbiome researchers at Colorado State University have many questions about the microbial communities deep underground, including the role viral infection may play in other natural ecosystems.

    Read more

    Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical output due to growth and viability constraints. Cell extracts provide an alternative format for chemical synthesis in the absence of cell growth by isolating the soluble components of lysed cells. By separating the production of enzymes (during growth) and the biochemical production process (in cell-free reactions), this framework enables biosynthesis of diverse chemical products at volumetric productivities greater than the source strains. (Blake Rasor)
    Boosting Small Molecule Production in Super “Soup”
    Researchers supported through the Emerging Technologies Opportunity Program describe a two-pronged approach that starts with engineered yeast cells but then moves out of the cell structure into a cell-free system.

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    These bright green spots are fluorescently labelled bacteria from soil collected from the surface of plant roots. For reference, the scale bar at bottom right is 10 micrometers long. (Rhona Stuart)
    A Powerful Technique to Study Microbes, Now Easier
    In JGI's Genome Insider podcast: LLNL biologist Jennifer Pett-Ridge collaborated with JGI scientists through the Emerging Technologies Opportunity Program to semi-automate experiments that measure microbial activity in soil.

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    A view of the mangroves from which the giant bacteria were sampled in Guadeloupe. (Hugo Bret)
    Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
    Harnessing JGI and Berkeley Lab resources, researchers characterized a giant - 5,000 times bigger than most bacteria - filamentous bacterium discovered in the Caribbean mangroves.

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    In their approved proposal, Frederick Colwell of Oregon State University and colleagues are interested in the microbial communities that live on Alaska’s glacially dominated Copper River Delta. They’re looking at how the microbes in these high latitude wetlands, such as the Copper River Delta wetland pond shown here, cycle carbon. (Courtesy of Rick Colwell)
    Monitoring Inter-Organism Interactions Within Ecosystems
    Many of the proposals approved through JGI's annual Community Science Program call focus on harnessing genomics to developing sustainable resources for biofuels and bioproducts.

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    Coloring the water, the algae Phaeocystis blooms off the side of the sampling vessel, Polarstern, in the temperate region of the North Atlantic. (Katrin Schmidt)
    Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
    As warm-adapted microbes edge polewards, they’d oust resident tiny algae. It's a trend that threatens to destabilize the delicate marine food web and change the oceans as we know them.

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News & Publications
Home › News & Publications › Publications › 2016 Publications

2016 Publications

Aizenberg-Gershtein, Y. et al. (2016) High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775(T), a plant pathogen of French bean pods. Stand Genomic Sci 11, 4. 10.1186/s40793-015-0127-5
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Alfaro, M. et al. (2016) Comparative and transcriptional analysis of the predicted secretome in the lignocellulose-degrading basidiomycete fungus Pleurotus ostreatus. Environ Microbiol . 10.1111/1462-2920.13360
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Anderson, I. J. et al. (2016) Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34. Stand Genomic Sci 11(1), 70. 10.1186/s40793-016-0194-2
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Arango Isaza, R. E. et al. (2016) Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control. PLoS Genet 12(8), e1005876. 10.1371/journal.pgen.1005876
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Bashir, M. et al. (2016) Functional Metagenomics of Spacecraft Assembly Cleanrooms: Presence of Virulence Factors Associated with Human Pathogens. Frontiers in Microbiology 7. 10.3389/fmicb.2016.01321
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Beall, B. F. et al. (2016) Ice cover extent drives phytoplankton and bacterial community structure in a large north-temperate lake: implications for a warming climate. Environ Microbiol 18(6), 1704-19. 10.1111/1462-2920.12819
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Beam, J. P. et al. (2016) Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs. Frontiers in Microbiology 7, 25. 10.3389/fmicb.2016.00025
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Bendall, M. L. et al. (2016) Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations. ISME J . 10.1038/ismej.2015.241
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Bewick, A. J. et al. (2016) On the origin and evolutionary consequences of gene body DNA methylation. Proc Natl Acad Sci U S A 113(32), 9111-6. 10.1073/pnas.1604666113
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Blow, M. J. et al. (2016) The Epigenomic Landscape of Prokaryotes. PLoS Genet 12(2), e1005854. 10.1371/journal.pgen.1005854
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Boden, R. et al. (2016) Permanent draft genome of Thermithiobaclillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia. Stand Genomic Sci 11, 74. 10.1186/s40793-016-0188-0
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Bredeson, J. V. et al. (2016) Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity. Nat Biotechnol 34(5), 562-70. 10.1038/nbt.3535
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Bremges, A. et al. (2016) MeCorS: Metagenome-enabled error correction of single cell sequencing reads. Bioinformatics . 10.1093/bioinformatics/btw144
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Brown, C. T. et al. (2016) Measurement of bacterial replication rates in microbial communities. Nat Biotechnol 34(12), 1256-1263. 10.1038/nbt.3704
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Browne, P. et al. (2016) Genomic composition and dynamics among Methanomicrobiales predict adaptation to contrasting environments. ISME J . 10.1038/ismej.2016.104
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Brumm, P. J. et al. (2016) Complete genome sequences of Geobacillus sp. WCH70, a thermophilic strain isolated from wood compost. Stand Genomic Sci 11, 33. 10.1186/s40793-016-0153-y
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Buels, R. et al. (2016) JBrowse: a dynamic web platform for genome visualization and analysis. Genome Biol 17(1), 66. 10.1186/s13059-016-0924-1
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Butterfield, C. N. et al. (2016) Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone. PeerJ 4, e2687. 10.7717/peerj.2687
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Castanera, R. et al. (2016) Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles. PLoS Genet 12(6), e1006108. 10.1371/journal.pgen.1006108
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Chen, I. M. et al. (2016) Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system. BMC Genomics 17(1), 307. 10.1186/s12864-016-2629-y
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Chin, C. S. et al. (2016) Phased diploid genome assembly with single-molecule real-time sequencing. Nat Methods 13(12), 1050-1054. 10.1038/nmeth.4035
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Coleman-Derr, D. et al. (2016) Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species. New Phytol . 10.1111/nph.13697
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Collier, R. et al. (2016) Use of Agrobacterium rhizogenes Strain 18r12v and Paromomycin Selection for Transformation of Brachypodium distachyon and Brachypodium sylvaticum. Front Plant Sci 7, 716. 10.3389/fpls.2016.00716
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Corrochano, L. M. et al. (2016) Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication. Curr Biol . 10.1016/j.cub.2016.04.038
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Daly, R. A. et al. (2016) Microbial metabolisms in a 2.5-km-deep ecosystem created by hydraulic fracturing in shales. Nat Microbiol 1, 16146. 10.1038/nmicrobiol.2016.146
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David, A. S. et al. (2016) Draft Genome Sequence of Microdochium bolleyi, a Dark Septate Fungal Endophyte of Beach Grass. Genome Announc 4(2). 10.1128/genomeA.00270-16
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De Meyer, S. E. et al. (2016) Symbiotic Burkholderia Species Show Diverse Arrangements of nif/fix and nod Genes and Lack Typical High-Affinity Cytochrome cbb3 Oxidase Genes. Mol Plant Microbe Interact 29(8), 609-619. 10.1094/MPMI-05-16-0091-R
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Denef, V. J. et al. (2016) Seasonal Succession Leads to Habitat-Dependent Differentiation in Ribosomal RNA:DNA Ratios among Freshwater Lake Bacteria. Front Microbiol 7, 606. 10.3389/fmicb.2016.00606
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Denef, V. J. et al. (2016) Chloroflexi CL500-11 Populations That Predominate Deep-Lake Hypolimnion Bacterioplankton Rely on Nitrogen-Rich Dissolved Organic Matter Metabolism and C1 Compound Oxidation. Appl Environ Microbiol 82(5), 1423-32. 10.1128/AEM.03014-15
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Dinh Thi, V. H. et al. (2016) Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei. PLoS One 11(12), e0167171. 10.1371/journal.pone.0167171
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Duncan, D. S. et al. (2016) Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods. Soil Biology & Biochemistry 96, 160-168. 10.1016/j.soilbio.2016.02.002
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Eiler, A. et al. (2016) Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria. ISME J . 10.1038/ismej.2015.260
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Eloe-Fadrosh, E. A. et al. (2016) Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs. Nat Commun 7, 10476. 10.1038/ncomms10476
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Eloe-Fadrosh, Emiley A. et al. (2016) Metagenomics uncovers gaps in amplicon-based detection of microbial diversity. Nature Microbiology , 15032. 10.1038/nmicrobiol.2015.32
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Eudes, A. et al. (2016) Exploiting members of the BAHD acyltransferase family to synthesize multiple hydroxycinnamate and benzoate conjugates in yeast. Microb Cell Fact 15(1), 198. 10.1186/s12934-016-0593-5
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Flynn, J. D. et al. (2016) Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems. Genome Announc 4(1). 10.1128/genomeA.01629-15
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Fonseca-Garcia, C. et al. (2016) The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity. Frontiers in Microbiology 7, 150. 10.3389/fmicb.2016.00150
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Frazier, T. P. et al. (2016) Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass. BMC Genomics 17(1), 892. 10.1186/s12864-016-3201-5
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Frei, C. S. et al. (2016) Analysis of Amino Acid Substitutions in AraC Variants that Respond to Triacetic Acid Lactone. Protein Sci . 10.1002/pro.2873
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Fujimoto, Masanori et al. (2016) Spatiotemporal distribution of bacterioplankton functional groups along a freshwater estuary to pelagic gradient in Lake Michigan. Journal of Great Lakes Research -(-), -. 10.1016/j.jglr.2016.07.029
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Gach, P. C. et al. (2016) A Droplet Microfluidic Platform for Automating Genetic Engineering. ACS Synth Biol . 10.1021/acssynbio.6b00011
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Ganji, R. et al. (2016) High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1T Isolated from Great Boiling Spring, Nevada. Genome Announc 4(5). 10.1128/genomeA.01112-16
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Gazis, R. et al. (2016) The genome of Xylona heveae provides a window into fungal endophytism. Fungal Biol 120(1), 26-42. 10.1016/j.funbio.2015.10.002
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Gehlot, H. S. et al. (2016) High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India. Stand Genomic Sci 11, 43. 10.1186/s40793-016-0157-7
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Ghodhbane-Gtari, F. et al. (2016) Permanent Draft Genome Sequence of Nocardia sp. BMG111209, an Actinobacterium Isolated from Nodules of Casuarina glauca. Genome Announc 4(4). 10.1128/genomeA.00770-16
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Ghodhbane-Gtari, F. et al. (2016) Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca. Genome Announc 4(4). 10.1128/genomeA.00799-16
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Goodwin, S. B. et al. (2016) The mitochondrial genome of the ethanol-metabolizing, wine cellar mold Zasmidium cellare is the smallest for a filamentous ascomycete. Fungal Biol 120(8), 961-74. 10.1016/j.funbio.2016.05.003
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Goordial, J. et al. (2016) Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica. FEMS Microbiol Ecol . 10.1093/femsec/fiv154
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Goordial, J. et al. (2016) Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica. Genome Announc 4(2). 10.1128/genomeA.00069-16
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Grabowski, P. P. et al. (2016) Genome-wide associations with flowering time in switchgrass using exome-capture sequencing data. New Phytol . 10.1111/nph.14101
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Gregory, A. C. et al. (2016) Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer. BMC Genomics 17(1), 930. 10.1186/s12864-016-3286-x
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Guibert, L. M. et al. (2016) Diverse Bacterial Groups Contribute to the Alkane Degradation Potential of Chronically Polluted Subantarctic Coastal Sediments. Microb Ecol 71(1), 100-12. 10.1007/s00248-015-0698-0
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Gunsalus, R. P. et al. (2016) Complete genome sequence of Methanospirillum hungatei type strain JF1. Stand Genomic Sci 11, 2. 10.1186/s40793-015-0124-8
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Gupta, V. K. et al. (2016) Biotechnological Innovations through Fungi. Mycosphere 7(10), 1490-1490. 10.5943/mycosphere/si/3b/11
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Gutierrez, T. et al. (2016) Genome Sequence of Marinobacter sp. Strain MCTG268 Isolated from the Cosmopolitan Marine Diatom Skeletonema costatum. Genome Announc 4(5). 10.1128/genomeA.00937-16
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Gutierrez, T. et al. (2016) Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton. Genome Announc 4(4). 10.1128/genomeA.00765-16
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Hahnke, R. L. et al. (2016) Genome-Based Taxonomic Classification of Bacteroidetes. Front Microbiol 7, 2003. 10.3389/fmicb.2016.02003
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Hatzenpichler, R. et al. (2016) Visualizing in situ translational activity for identifying and sorting slow-growing archaeal-bacterial consortia. Proc Natl Acad Sci U S A . 10.1073/pnas.1603757113
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Hausmann, B. et al. (2016) Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms. ISME J 10(10), 2365-75. 10.1038/ismej.2016.42
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Hausmann, B. et al. (2016) Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms. ISME J . 10.1038/ismej.2016.42
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Hillson, N. J. et al. (2016) Improving Synthetic Biology Communication: Recommended Practices for Visual Depiction and Digital Submission of Genetic Designs. ACS Synth Biol 5(6), 449-51. 10.1021/acssynbio.6b00146
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Hirschman, L. et al. (2016) Crowdsourcing and curation: perspectives from biology and natural language processing. Database (Oxford) 2016. 10.1093/database/baw115
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Holmfeldt, K. et al. (2016) Large-scale maps of variable infection efficiencies in aquatic Bacteroidetes phage-host model systems. Environ Microbiol 18(11), 3949-3961. 10.1111/1462-2920.13392
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Holmfeldt, K. et al. (2016) Large-scale maps of variable infection efficiencies in aquatic Bacteroidetes phage-host model systems. Environ Microbiol . 10.1111/1462-2920.13392
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Huntemann, M. et al. (2016) The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4). Stand Genomic Sci 11, 17. 10.1186/s40793-016-0138-x
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Hutchinson, M. I. et al. (2016) Genetics of mating in members of the Chaetomiaceae as revealed by experimental and genomic characterization of reproduction in Myceliophthora heterothallica. Fungal Genet Biol 86, 9-19. 10.1016/j.fgb.2015.11.007
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Hwang, C. et al. (2016) Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds. Genome Announc 4(6). 10.1128/genomeA.01226-16
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Ikeda-Ohtsubo, W. et al. (2016) 'Candidatus Adiutrix intracellularis', an endosymbiont of termite gut flagellates, is the first representative of a deep-branching clade of Deltaproteobacteria and a putative homoacetogen. Environ Microbiol . 10.1111/1462-2920.13234
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Javidpour, P. et al. (2016) Investigation of Proposed Ladderane Biosynthetic Genes from Anammox Bacteria by Heterologous Expression in E. coli. PLoS One 11(3), e0151087. 10.1371/journal.pone.0151087
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Jay, Z. J. et al. (2016) The distribution, diversity and function of predominant Thermoproteales in high-temperature environments of Yellowstone National Park. Environ Microbiol 18(12), 4755-4769. 10.1111/1462-2920.13366
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Kamke, J. et al. (2016) Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation. Microbiome 4(1), 56. 10.1186/s40168-016-0201-2
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Kan, J. et al. (2016) Geochemistry and Mixing Drive the Spatial Distribution of Free-Living Archaea and Bacteria in Yellowstone Lake. Frontiers in Microbiology 7, 210. 10.3389/fmicb.2016.00210
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Kanukollu, S. et al. (2016) Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment. Stand Genomic Sci 11, 25. 10.1186/s40793-016-0143-0
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Kappler, U. et al. (2016) Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing gamma-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477(T)). Stand Genomic Sci 11, 38. 10.1186/s40793-016-0162-x
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Kelly, W. J. et al. (2016) Genomic analysis of three Bifidobacterium species isolated from the calf gastrointestinal tract. Sci Rep 6, 30768. 10.1038/srep30768
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Kim, J. W. et al. (2016) Genome Analysis of Planctomycetes Inhabiting Blades of the Red Alga Porphyra umbilicalis. PLoS One 11(3), e0151883. 10.1371/journal.pone.0151883
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Kyrpides, N. C. et al. (2016) Microbiome Data Science: Understanding Our Microbial Planet. Trends Microbiol 24(6), 425-7. 10.1016/j.tim.2016.02.011
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Lam, K. K. et al. (2016) BIGMAC : breaking inaccurate genomes and merging assembled contigs for long read metagenomic assembly. BMC Bioinformatics 17(1), 435. 10.1186/s12859-016-1288-y
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Lastovetsky, O. A. et al. (2016) Lipid metabolic changes in an early divergent fungus govern the establishment of a mutualistic symbiosis with endobacteria. Proc Natl Acad Sci U S A 113(52), 15102-15107. 10.1073/pnas.1615148113
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Li, G. et al. (2016) Genome-Wide Sequencing of 41 Rice (Oryza sativa L.) Mutated Lines Reveals Diverse Mutations Induced by Fast-Neutron Irradiation. Mol Plant . 10.1016/j.molp.2016.03.009
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Linshiz, G. et al. (2016) End-to-end automated microfluidic platform for synthetic biology: from design to functional analysis. J Biol Eng 10, 3. 10.1186/s13036-016-0024-5
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Louca, S. et al. (2016) Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone. Proc Natl Acad Sci U S A 113(40), E5925-E5933. 10.1073/pnas.1602897113
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Louie, T. S. et al. (2016) High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1T, a gammaproteobacterium isolated from estuarine sediment. Stand Genomic Sci 11, 66. 10.1186/s40793-016-0191-5
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Lovell, J. T. et al. (2016) Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C4 grass. Genome Res 26(4), 510-8. 10.1101/gr.198135.115
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Lux, M. et al. (2016) acdc - Automated Contamination Detection and Confidence estimation for single-cell genome data. BMC Bioinformatics 17(1), 543. 10.1186/s12859-016-1397-7
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Mamidi, S. et al. (2016) Sequence-Based Introgression Mapping Identifies Candidate White Mold Tolerance Genes in Common Bean. Plant Genome 9(2). 10.3835/plantgenome2015.09.0092
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Mefferd, C. C. et al. (2016) High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, China. Genome Announc 4(2). 10.1128/genomeA.00312-16
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Melton, E. D. et al. (2016) Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2(T), a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes. Stand Genomic Sci 11(1), 67. 10.1186/s40793-016-0184-4
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Miettinen, O. et al. (2016) Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2. Genome Announc 4(5). 10.1128/genomeA.00976-16
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Miyauchi, S. et al. (2016) Visual Comparative Omics of Fungi for Plant Biomass Deconstruction. Front Microbiol 7, 1335. 10.3389/fmicb.2016.01335
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Moghaddam, S. M. et al. (2016) Genome-Wide Association Study Identifies Candidate Loci Underlying Agronomic Traits in a Middle American Diversity Panel of Common Bean. Plant Genome 9(3). 10.3835/plantgenome2016.02.0012
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Morales, J. et al. (2016) Development of a toolbox to dissect host-endosymbiont interactions and protein trafficking in the trypanosomatid Angomonas deanei. BMC Evol Biol 16(1), 247. 10.1186/s12862-016-0820-z
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Zhou, E. M. et al. (2016) High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway. Stand Genomic Sci 11, 20. 10.1186/s40793-016-0140-3
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