News & Publications

2016 Publications

Aizenberg-Gershtein, Y. et al. (2016) High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775(T), a plant pathogen of French bean pods. Stand Genomic Sci 11, 4. 10.1186/s40793-015-0127-5
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Alfaro, M. et al. (2016) Comparative and transcriptional analysis of the predicted secretome in the lignocellulose-degrading basidiomycete fungus Pleurotus ostreatus. Environ Microbiol . 10.1111/1462-2920.13360
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Anderson, I. J. et al. (2016) Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34. Stand Genomic Sci 11(1), 70. 10.1186/s40793-016-0194-2
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Arango Isaza, R. E. et al. (2016) Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control. PLoS Genet 12(8), e1005876. 10.1371/journal.pgen.1005876
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Bashir, M. et al. (2016) Functional Metagenomics of Spacecraft Assembly Cleanrooms: Presence of Virulence Factors Associated with Human Pathogens. Frontiers in Microbiology 7. 10.3389/fmicb.2016.01321
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Beall, B. F. et al. (2016) Ice cover extent drives phytoplankton and bacterial community structure in a large north-temperate lake: implications for a warming climate. Environ Microbiol 18(6), 1704-19. 10.1111/1462-2920.12819
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Beam, J. P. et al. (2016) Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs. Frontiers in Microbiology 7, 25. 10.3389/fmicb.2016.00025
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Bendall, M. L. et al. (2016) Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations. ISME J . 10.1038/ismej.2015.241
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Bewick, A. J. et al. (2016) On the origin and evolutionary consequences of gene body DNA methylation. Proc Natl Acad Sci U S A 113(32), 9111-6. 10.1073/pnas.1604666113
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Blow, M. J. et al. (2016) The Epigenomic Landscape of Prokaryotes. PLoS Genet 12(2), e1005854. 10.1371/journal.pgen.1005854
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Boden, R. et al. (2016) Permanent draft genome of Thermithiobaclillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia. Stand Genomic Sci 11, 74. 10.1186/s40793-016-0188-0
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Bredeson, J. V. et al. (2016) Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity. Nat Biotechnol 34(5), 562-70. 10.1038/nbt.3535
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Bremges, A. et al. (2016) MeCorS: Metagenome-enabled error correction of single cell sequencing reads. Bioinformatics . 10.1093/bioinformatics/btw144
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Brown, C. T. et al. (2016) Measurement of bacterial replication rates in microbial communities. Nat Biotechnol 34(12), 1256-1263. 10.1038/nbt.3704
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Browne, P. et al. (2016) Genomic composition and dynamics among Methanomicrobiales predict adaptation to contrasting environments. ISME J . 10.1038/ismej.2016.104
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Brumm, P. J. et al. (2016) Complete genome sequences of Geobacillus sp. WCH70, a thermophilic strain isolated from wood compost. Stand Genomic Sci 11, 33. 10.1186/s40793-016-0153-y
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Buels, R. et al. (2016) JBrowse: a dynamic web platform for genome visualization and analysis. Genome Biol 17(1), 66. 10.1186/s13059-016-0924-1
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Butterfield, C. N. et al. (2016) Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone. PeerJ 4, e2687. 10.7717/peerj.2687
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Castanera, R. et al. (2016) Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles. PLoS Genet 12(6), e1006108. 10.1371/journal.pgen.1006108
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Chen, I. M. et al. (2016) Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system. BMC Genomics 17(1), 307. 10.1186/s12864-016-2629-y
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Chin, C. S. et al. (2016) Phased diploid genome assembly with single-molecule real-time sequencing. Nat Methods 13(12), 1050-1054. 10.1038/nmeth.4035
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Coleman-Derr, D. et al. (2016) Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species. New Phytol . 10.1111/nph.13697
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Collier, R. et al. (2016) Use of Agrobacterium rhizogenes Strain 18r12v and Paromomycin Selection for Transformation of Brachypodium distachyon and Brachypodium sylvaticum. Front Plant Sci 7, 716. 10.3389/fpls.2016.00716
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Corrochano, L. M. et al. (2016) Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication. Curr Biol . 10.1016/j.cub.2016.04.038
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Daly, R. A. et al. (2016) Microbial metabolisms in a 2.5-km-deep ecosystem created by hydraulic fracturing in shales. Nat Microbiol 1, 16146. 10.1038/nmicrobiol.2016.146
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David, A. S. et al. (2016) Draft Genome Sequence of Microdochium bolleyi, a Dark Septate Fungal Endophyte of Beach Grass. Genome Announc 4(2). 10.1128/genomeA.00270-16
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De Meyer, S. E. et al. (2016) Symbiotic Burkholderia Species Show Diverse Arrangements of nif/fix and nod Genes and Lack Typical High-Affinity Cytochrome cbb3 Oxidase Genes. Mol Plant Microbe Interact 29(8), 609-619. 10.1094/MPMI-05-16-0091-R
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Denef, V. J. et al. (2016) Seasonal Succession Leads to Habitat-Dependent Differentiation in Ribosomal RNA:DNA Ratios among Freshwater Lake Bacteria. Front Microbiol 7, 606. 10.3389/fmicb.2016.00606
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Denef, V. J. et al. (2016) Chloroflexi CL500-11 Populations That Predominate Deep-Lake Hypolimnion Bacterioplankton Rely on Nitrogen-Rich Dissolved Organic Matter Metabolism and C1 Compound Oxidation. Appl Environ Microbiol 82(5), 1423-32. 10.1128/AEM.03014-15
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Dinh Thi, V. H. et al. (2016) Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei. PLoS One 11(12), e0167171. 10.1371/journal.pone.0167171
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Duncan, D. S. et al. (2016) Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods. Soil Biology & Biochemistry 96, 160-168. 10.1016/j.soilbio.2016.02.002
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Eiler, A. et al. (2016) Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria. ISME J . 10.1038/ismej.2015.260
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Eloe-Fadrosh, E. A. et al. (2016) Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs. Nat Commun 7, 10476. 10.1038/ncomms10476
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Eloe-Fadrosh, Emiley A. et al. (2016) Metagenomics uncovers gaps in amplicon-based detection of microbial diversity. Nature Microbiology , 15032. 10.1038/nmicrobiol.2015.32
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Eudes, A. et al. (2016) Exploiting members of the BAHD acyltransferase family to synthesize multiple hydroxycinnamate and benzoate conjugates in yeast. Microb Cell Fact 15(1), 198. 10.1186/s12934-016-0593-5
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Flynn, J. D. et al. (2016) Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems. Genome Announc 4(1). 10.1128/genomeA.01629-15
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Fonseca-Garcia, C. et al. (2016) The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity. Frontiers in Microbiology 7, 150. 10.3389/fmicb.2016.00150
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Frazier, T. P. et al. (2016) Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass. BMC Genomics 17(1), 892. 10.1186/s12864-016-3201-5
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Frei, C. S. et al. (2016) Analysis of Amino Acid Substitutions in AraC Variants that Respond to Triacetic Acid Lactone. Protein Sci . 10.1002/pro.2873
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Fujimoto, Masanori et al. (2016) Spatiotemporal distribution of bacterioplankton functional groups along a freshwater estuary to pelagic gradient in Lake Michigan. Journal of Great Lakes Research -(-), -. 10.1016/j.jglr.2016.07.029
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Gach, P. C. et al. (2016) A Droplet Microfluidic Platform for Automating Genetic Engineering. ACS Synth Biol . 10.1021/acssynbio.6b00011
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Ganji, R. et al. (2016) High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1T Isolated from Great Boiling Spring, Nevada. Genome Announc 4(5). 10.1128/genomeA.01112-16
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Gazis, R. et al. (2016) The genome of Xylona heveae provides a window into fungal endophytism. Fungal Biol 120(1), 26-42. 10.1016/j.funbio.2015.10.002
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Gehlot, H. S. et al. (2016) High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India. Stand Genomic Sci 11, 43. 10.1186/s40793-016-0157-7
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Ghodhbane-Gtari, F. et al. (2016) Permanent Draft Genome Sequence of Nocardia sp. BMG111209, an Actinobacterium Isolated from Nodules of Casuarina glauca. Genome Announc 4(4). 10.1128/genomeA.00770-16
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Ghodhbane-Gtari, F. et al. (2016) Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca. Genome Announc 4(4). 10.1128/genomeA.00799-16
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Goodwin, S. B. et al. (2016) The mitochondrial genome of the ethanol-metabolizing, wine cellar mold Zasmidium cellare is the smallest for a filamentous ascomycete. Fungal Biol 120(8), 961-74. 10.1016/j.funbio.2016.05.003
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Goordial, J. et al. (2016) Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica. FEMS Microbiol Ecol . 10.1093/femsec/fiv154
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Goordial, J. et al. (2016) Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica. Genome Announc 4(2). 10.1128/genomeA.00069-16
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Grabowski, P. P. et al. (2016) Genome-wide associations with flowering time in switchgrass using exome-capture sequencing data. New Phytol . 10.1111/nph.14101
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Gregory, A. C. et al. (2016) Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer. BMC Genomics 17(1), 930. 10.1186/s12864-016-3286-x
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Guibert, L. M. et al. (2016) Diverse Bacterial Groups Contribute to the Alkane Degradation Potential of Chronically Polluted Subantarctic Coastal Sediments. Microb Ecol 71(1), 100-12. 10.1007/s00248-015-0698-0
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Gunsalus, R. P. et al. (2016) Complete genome sequence of Methanospirillum hungatei type strain JF1. Stand Genomic Sci 11, 2. 10.1186/s40793-015-0124-8
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Gupta, V. K. et al. (2016) Biotechnological Innovations through Fungi. Mycosphere 7(10), 1490-1490. 10.5943/mycosphere/si/3b/11
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Gutierrez, T. et al. (2016) Genome Sequence of Marinobacter sp. Strain MCTG268 Isolated from the Cosmopolitan Marine Diatom Skeletonema costatum. Genome Announc 4(5). 10.1128/genomeA.00937-16
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Gutierrez, T. et al. (2016) Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton. Genome Announc 4(4). 10.1128/genomeA.00765-16
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Hahnke, R. L. et al. (2016) Genome-Based Taxonomic Classification of Bacteroidetes. Front Microbiol 7, 2003. 10.3389/fmicb.2016.02003
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Hatzenpichler, R. et al. (2016) Visualizing in situ translational activity for identifying and sorting slow-growing archaeal-bacterial consortia. Proc Natl Acad Sci U S A . 10.1073/pnas.1603757113
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Hausmann, B. et al. (2016) Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms. ISME J 10(10), 2365-75. 10.1038/ismej.2016.42
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Hausmann, B. et al. (2016) Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms. ISME J . 10.1038/ismej.2016.42
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Hillson, N. J. et al. (2016) Improving Synthetic Biology Communication: Recommended Practices for Visual Depiction and Digital Submission of Genetic Designs. ACS Synth Biol 5(6), 449-51. 10.1021/acssynbio.6b00146
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Hirschman, L. et al. (2016) Crowdsourcing and curation: perspectives from biology and natural language processing. Database (Oxford) 2016. 10.1093/database/baw115
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Holmfeldt, K. et al. (2016) Large-scale maps of variable infection efficiencies in aquatic Bacteroidetes phage-host model systems. Environ Microbiol 18(11), 3949-3961. 10.1111/1462-2920.13392
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Holmfeldt, K. et al. (2016) Large-scale maps of variable infection efficiencies in aquatic Bacteroidetes phage-host model systems. Environ Microbiol . 10.1111/1462-2920.13392
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Huntemann, M. et al. (2016) The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4). Stand Genomic Sci 11, 17. 10.1186/s40793-016-0138-x
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Hutchinson, M. I. et al. (2016) Genetics of mating in members of the Chaetomiaceae as revealed by experimental and genomic characterization of reproduction in Myceliophthora heterothallica. Fungal Genet Biol 86, 9-19. 10.1016/j.fgb.2015.11.007
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Hwang, C. et al. (2016) Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds. Genome Announc 4(6). 10.1128/genomeA.01226-16
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Ikeda-Ohtsubo, W. et al. (2016) 'Candidatus Adiutrix intracellularis', an endosymbiont of termite gut flagellates, is the first representative of a deep-branching clade of Deltaproteobacteria and a putative homoacetogen. Environ Microbiol . 10.1111/1462-2920.13234
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Javidpour, P. et al. (2016) Investigation of Proposed Ladderane Biosynthetic Genes from Anammox Bacteria by Heterologous Expression in E. coli. PLoS One 11(3), e0151087. 10.1371/journal.pone.0151087
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Jay, Z. J. et al. (2016) The distribution, diversity and function of predominant Thermoproteales in high-temperature environments of Yellowstone National Park. Environ Microbiol 18(12), 4755-4769. 10.1111/1462-2920.13366
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Kamke, J. et al. (2016) Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation. Microbiome 4(1), 56. 10.1186/s40168-016-0201-2
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Kan, J. et al. (2016) Geochemistry and Mixing Drive the Spatial Distribution of Free-Living Archaea and Bacteria in Yellowstone Lake. Frontiers in Microbiology 7, 210. 10.3389/fmicb.2016.00210
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Kanukollu, S. et al. (2016) Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment. Stand Genomic Sci 11, 25. 10.1186/s40793-016-0143-0
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Kappler, U. et al. (2016) Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing gamma-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477(T)). Stand Genomic Sci 11, 38. 10.1186/s40793-016-0162-x
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Kelly, W. J. et al. (2016) Genomic analysis of three Bifidobacterium species isolated from the calf gastrointestinal tract. Sci Rep 6, 30768. 10.1038/srep30768
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Kim, J. W. et al. (2016) Genome Analysis of Planctomycetes Inhabiting Blades of the Red Alga Porphyra umbilicalis. PLoS One 11(3), e0151883. 10.1371/journal.pone.0151883
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Kyrpides, N. C. et al. (2016) Microbiome Data Science: Understanding Our Microbial Planet. Trends Microbiol 24(6), 425-7. 10.1016/j.tim.2016.02.011
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Lam, K. K. et al. (2016) BIGMAC : breaking inaccurate genomes and merging assembled contigs for long read metagenomic assembly. BMC Bioinformatics 17(1), 435. 10.1186/s12859-016-1288-y
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Lastovetsky, O. A. et al. (2016) Lipid metabolic changes in an early divergent fungus govern the establishment of a mutualistic symbiosis with endobacteria. Proc Natl Acad Sci U S A 113(52), 15102-15107. 10.1073/pnas.1615148113
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Li, G. et al. (2016) Genome-Wide Sequencing of 41 Rice (Oryza sativa L.) Mutated Lines Reveals Diverse Mutations Induced by Fast-Neutron Irradiation. Mol Plant . 10.1016/j.molp.2016.03.009
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Linshiz, G. et al. (2016) End-to-end automated microfluidic platform for synthetic biology: from design to functional analysis. J Biol Eng 10, 3. 10.1186/s13036-016-0024-5
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Louca, S. et al. (2016) Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone. Proc Natl Acad Sci U S A 113(40), E5925-E5933. 10.1073/pnas.1602897113
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Louie, T. S. et al. (2016) High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1T, a gammaproteobacterium isolated from estuarine sediment. Stand Genomic Sci 11, 66. 10.1186/s40793-016-0191-5
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Lovell, J. T. et al. (2016) Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C4 grass. Genome Res 26(4), 510-8. 10.1101/gr.198135.115
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Lux, M. et al. (2016) acdc - Automated Contamination Detection and Confidence estimation for single-cell genome data. BMC Bioinformatics 17(1), 543. 10.1186/s12859-016-1397-7
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Mamidi, S. et al. (2016) Sequence-Based Introgression Mapping Identifies Candidate White Mold Tolerance Genes in Common Bean. Plant Genome 9(2). 10.3835/plantgenome2015.09.0092
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Mefferd, C. C. et al. (2016) High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, China. Genome Announc 4(2). 10.1128/genomeA.00312-16
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Melton, E. D. et al. (2016) Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2(T), a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes. Stand Genomic Sci 11(1), 67. 10.1186/s40793-016-0184-4
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Miettinen, O. et al. (2016) Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2. Genome Announc 4(5). 10.1128/genomeA.00976-16
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Miyauchi, S. et al. (2016) Visual Comparative Omics of Fungi for Plant Biomass Deconstruction. Front Microbiol 7, 1335. 10.3389/fmicb.2016.01335
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Moghaddam, S. M. et al. (2016) Genome-Wide Association Study Identifies Candidate Loci Underlying Agronomic Traits in a Middle American Diversity Panel of Common Bean. Plant Genome 9(3). 10.3835/plantgenome2016.02.0012
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Morales, J. et al. (2016) Development of a toolbox to dissect host-endosymbiont interactions and protein trafficking in the trypanosomatid Angomonas deanei. BMC Evol Biol 16(1), 247. 10.1186/s12862-016-0820-z
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Mosier, A. C. et al. (2016) Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. Frontiers in Microbiology 7, 238. 10.3389/fmicb.2016.00238
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Mukai, T. et al. (2016) Transfer RNAs with novel cloverleaf structures. Nucleic Acids Res . 10.1093/nar/gkw898
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Mukai, T. et al. (2016) Facile Recoding of Selenocysteine in Nature. Angew Chem Int Ed Engl 55(17), 5337-41. 10.1002/anie.201511657
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Nguyen, H. D. et al. (2016) Ochratoxin A production by Penicillium thymicola. Fungal Biol 120(8), 1041-9. 10.1016/j.funbio.2016.04.002
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Nicholson, W. L. et al. (2016) An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1(T). Stand Genomic Sci 11(1), 65. 10.1186/s40793-016-0193-3
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Niederhuth, C. E. et al. (2016) Widespread natural variation of DNA methylation within angiosperms. Genome Biol 17(1), 194. 10.1186/s13059-016-1059-0
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Nouioui, I. et al. (2016) Draft Genome Sequence of Frankia Strain G2, a Nitrogen-Fixing Actinobacterium Isolated from Casuarina equisetifolia and Able To Nodulate Actinorhizal Plants of the Order Rhamnales. Genome Announc 4(3). 10.1128/genomeA.00437-16
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Olsen, J. L. et al. (2016) The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea. Nature 530(7590), 331-5. 10.1038/nature16548
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Paez-Espino, D. et al. (2016) Uncovering Earth's virome. Nature . 10.1038/nature19094
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Panschin, I. et al. (2016) Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050(T) (DSM 19838(T)) and Gramella portivictoriae UST040801-001(T) (DSM 23547(T)), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005. Stand Genomic Sci 11, 37. 10.1186/s40793-016-0163-9
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Pena, A. et al. (2016) High quality draft genome sequences of Pseudomonas fulva DSM 17717(T), Pseudomonas parafulva DSM 17004(T) and Pseudomonas cremoricolorata DSM 17059(T) type strains. Stand Genomic Sci 11(1), 55. 10.1186/s40793-016-0178-2
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Peter, M. et al. (2016) Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum. Nat Commun 7, 12662. 10.1038/ncomms12662
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Petrik, D. L. et al. (2016) BdCESA7, BdCESA8, and BdPMT Utility Promoter Constructs for Targeted Expression to Secondary Cell-Wall-Forming Cells of Grasses. Front Plant Sci 7, 55. 10.3389/fpls.2016.00055
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Piche-Choquette, S. et al. (2016) H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups. PeerJ 4, e1782. 10.7717/peerj.1782
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Putnam, N. H. et al. (2016) Chromosome-scale shotgun assembly using an in vitro method for long-range linkage. Genome Res 26(3), 342-50. 10.1101/gr.193474.115
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Rabe, F. et al. (2016) A complete toolset for the study of Ustilago bromivora and Brachypodium sp. as a fungal-temperate grass pathosystem. Elife 5. 10.7554/eLife.20522
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Raissig, M. T. et al. (2016) Grasses use an alternatively wired bHLH transcription factor network to establish stomatal identity. Proc Natl Acad Sci U S A . 10.1073/pnas.1606728113
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Rice, M. C. et al. (2016) Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil. Stand Genomic Sci 11, 46. 10.1186/s40793-016-0168-4
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Riley, R. et al. (2016) Comparative genomics of biotechnologically important yeasts. Proc Natl Acad Sci U S A . 10.1073/pnas.1603941113
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Rivers, A. R. et al. (2016) Experimental Identification of Small Non-Coding RNAs in the Model Marine Bacterium Ruegeria pomeroyi DSS-3. Front Microbiol 7, 380. 10.3389/fmicb.2016.00380
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Roehner, N. et al. (2016) Sharing Structure and Function in Biological Design with SBOL 2.0. ACS Synth Biol 5(6), 498-506. 10.1021/acssynbio.5b00215
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Rojas-Rojas, F. U. et al. (2016) Draft Genome Sequence of Heavy Metal-Resistant Cupriavidus alkaliphilus ASC-732T, Isolated from Agave Rhizosphere in the Northeast of Mexico. Genome Announc 4(5). 10.1128/genomeA.01013-16
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Salman, V. et al. (2016) Insights into the single cell draft genome of "Candidatus Achromatium palustre". Stand Genomic Sci 11, 28. 10.1186/s40793-016-0146-x
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Schneebeli, K. et al. (2016) Brachypodium distachyon genotypes vary in resistance to Rhizoctonia solani AG8. Functional Plant Biology 43(2), 189-198. 10.1071/Fp15244
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Schwander, T. et al. (2016) A synthetic pathway for the fixation of carbon dioxide in vitro. Science 354(6314), 900-904. 10.1126/science.aah5237
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Session, A. M. et al. (2016) Genome evolution in the allotetraploid frog Xenopus laevis. Nature 538(7625), 336-343. 10.1038/nature19840
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Shaw, A. J. et al. (2016) The Sphagnum Genome Project: A New Model for Ecological and Evolutionary Genomics. Genomes and Evolution of Charophytes, Bryophytes, Lycophytes and Ferns 78, 167-187. 10.1016/bs.abr.2016.01.003
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Shih, P. M. et al. (2016) A robust gene-stacking method utilizing yeast assembly for plant synthetic biology. Nat Commun 7, 13215. 10.1038/ncomms13215
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Singer, E. et al. (2016) High-resolution phylogenetic microbial community profiling. ISME J . 10.1038/ismej.2015.249
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Singer, E. et al. (2016) Next generation sequencing data of a defined microbial mock community. Sci Data 3, 160081. 10.1038/sdata.2016.81
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Small, G. E. et al. (2016) Large differences in potential denitrification and sediment microbial communities across the Laurentian great lakes. Biogeochemistry 128(3), 353-368. 10.1007/s10533-016-0212-x
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Solomon, K. V. et al. (2016) Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes. Science . 10.1126/science.aad1431
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