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    Maize can produce a cocktail of antibiotics with a handful of enzymes. (Sam Fentress, CC BY-SA 2.0)
    How Maize Makes An Antibiotic Cocktail
    Zealexins are produced in every corn variety and protect maize by fending off fungal and microbial infections using surprisingly few enzymes.

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    The genome of the common fiber vase or Thelephora terrestris was among those used in the study. (Francis Martin)
    From Competition to Cooperation
    By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how saprotrophs have transitioned to the symbiotic lifestyle.

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    Miscanthus grasses. (Roy Kaltschmidt/Berkeley Lab)
    A Grass Model to Help Improve Giant Miscanthus
    The reference genome for M. sinensis, and the associated genomic tools, allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such as sugarcane and sorghum.

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    Poplar (Populus trichocarpa and P. deltoides) grow in the Advanced Plant Phenotyping Laboratory (APPL) at Oak Ridge National Laboratory in Tennessee. Poplar is an important biofuel feedstock, and Populus trichocarpa is the first tree species to have its genome sequenced — a feat accomplished by JGI. (Image courtesy of Oak Ridge National Laboratory, U.S. Dept. of Energy)
    Podcast: Xiaohan Yang on A Plantiful Future
    Building off plant genomics collaborations between the JGI and Oak Ridge National Laboratory, Xiaohan Yang envisions customizing plants for the benefit of human society.

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    Expansin complex with cell wall in background. (Courtesy of Daniel Cosgrove)
    Synthesizing Microbial Expansins with Unusual Activities
    Expansin proteins from diverse microbes have potential uses in deconstructing lignocellulosic biomass for conversion to renewable biofuels, nanocellulosic fibers, and commodity biochemicals.

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    High oleic pennycress. (Courtesy of Ratan Chopra)
    Pennycress – A Solution for Global Food Security, Renewable Energy and Ecosystem Benefits
    Pennycress (Thlaspi arvense) is under development as a winter annual oilseed bioenergy crop. It could produce up to 3 billion gallons of seed oil annually while reducing soil erosion and fertilizer runoff.

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    Artistic interpretation of CheckV assessing virus genome sequences from environmental samples. (Rendered by Zosia Rostomian​, Berkeley Lab)
    An Automated Tool for Assessing Virus Data Quality
    CheckV can be broadly utilized by the research community to gauge virus data quality and will help researchers to follow best practices and guidelines for providing the minimum amount of information for an uncultivated virus genome.

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    Unicellular algae in the Chlorella genus, magnified 1300x. (Andrei Savitsky)
    A One-Stop Shop for Analyzing Algal Genomes
    The PhycoCosm data portal is an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental data.

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    Artistic interpretation of how microbial genome sequences from the GEM catalog can help fill in gaps of knowledge about the microbes that play key roles in the Earth's microbiomes. (Rendered by Zosia Rostomian​, Berkeley Lab)
    Podcast: A Primer on Genome Mining
    In Natural Prodcast: the basics of genome mining, and how JGI researchers conducted it in IMG/ABC on thousands of metagenome-derived genomes for a Nature Biotechnology paper.

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    Scanning electron micrographs of diverse diatoms. (Credits: Diana Sarno, Marina Montresor, Nicole Poulsen, Gerhard Dieckmann)
    Learn About the Approved 2021 Large-Scale CSP Proposals
    A total of 27 proposals have been approved through JGI's annual Community Science Program (CSP) call. For the first time, 63 percent of the accepted proposals come from researchers who have not previously been a principal investigator on an approved JGI proposal.

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    MiddleGaylor Michael Beman UC Merced
    How to Successfully Apply for a CSP Proposal
    Reach out to JGI staff for feedback before submitting a proposal. Be sure to describe in detail what you will do with the data.

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    Click on the image or go here to watch the video "Enriching target populations for genomic analyses using HCR-FISH" from the journal Microbiome describing the research.
    How to Target a Microbial Needle within a Community Haystack
    Enabled by the JGI’s Emerging Technologies Opportunity Program, researchers have developed, tested and deployed a pipeline to first target cells from communities of uncultivated microbes, and then efficiently retrieve and characterize their genomes.

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    Artistic interpretation of how microbial genome sequences from the GEM catalog can help fill in gaps of knowledge about the microbes that play key roles in the Earth's microbiomes. (Rendered by Zosia Rostomian​, Berkeley Lab)
    Uncovering Novel Genomes from Earth’s Microbiomes
    A public repository of 52,515 microbial draft genomes generated from environmental samples around the world, expanding the known diversity of bacteria and archaea by 44%, is now available .

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    Green millet (Setaria viridis) plant collected in the wild. (Courtesy of the Kellogg lab)
    Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
    In Nature Biotechnology, a very high quality reference Setaria viridis genome was sequenced, and for the first time in wild populations, a gene related to seed dispersal was identified.

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    The Brachypodium distachyon-B. stacei-B. hybridum polyploid model complex. (Illustrations credits: Juan Luis Castillo)
    The More the Merrier: Making the Case for Plant Pan-genomes
    Crop breeders have harnessed polyploidy to increase fruit and flower size, and confer stress tolerance traits. Using a Brachypodium model system, researchers have sought to learn the origins, evolution and development of plant polyploids. The work recently appeared in Nature Communications.

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News & Publications
Home › News & Publications › Publications › 2016 Publications

2016 Publications

Aizenberg-Gershtein, Y. et al. (2016) High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775(T), a plant pathogen of French bean pods. Stand Genomic Sci 11, 4. 10.1186/s40793-015-0127-5
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Alfaro, M. et al. (2016) Comparative and transcriptional analysis of the predicted secretome in the lignocellulose-degrading basidiomycete fungus Pleurotus ostreatus. Environ Microbiol . 10.1111/1462-2920.13360
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Anderson, I. J. et al. (2016) Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34. Stand Genomic Sci 11(1), 70. 10.1186/s40793-016-0194-2
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Arango Isaza, R. E. et al. (2016) Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control. PLoS Genet 12(8), e1005876. 10.1371/journal.pgen.1005876
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Bashir, M. et al. (2016) Functional Metagenomics of Spacecraft Assembly Cleanrooms: Presence of Virulence Factors Associated with Human Pathogens. Frontiers in Microbiology 7. 10.3389/fmicb.2016.01321
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Beall, B. F. et al. (2016) Ice cover extent drives phytoplankton and bacterial community structure in a large north-temperate lake: implications for a warming climate. Environ Microbiol 18(6), 1704-19. 10.1111/1462-2920.12819
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Beam, J. P. et al. (2016) Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs. Frontiers in Microbiology 7, 25. 10.3389/fmicb.2016.00025
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Bendall, M. L. et al. (2016) Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations. ISME J . 10.1038/ismej.2015.241
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Bewick, A. J. et al. (2016) On the origin and evolutionary consequences of gene body DNA methylation. Proc Natl Acad Sci U S A 113(32), 9111-6. 10.1073/pnas.1604666113
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Blow, M. J. et al. (2016) The Epigenomic Landscape of Prokaryotes. PLoS Genet 12(2), e1005854. 10.1371/journal.pgen.1005854
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Boden, R. et al. (2016) Permanent draft genome of Thermithiobaclillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia. Stand Genomic Sci 11, 74. 10.1186/s40793-016-0188-0
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Bredeson, J. V. et al. (2016) Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity. Nat Biotechnol 34(5), 562-70. 10.1038/nbt.3535
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Bremges, A. et al. (2016) MeCorS: Metagenome-enabled error correction of single cell sequencing reads. Bioinformatics . 10.1093/bioinformatics/btw144
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Brown, C. T. et al. (2016) Measurement of bacterial replication rates in microbial communities. Nat Biotechnol 34(12), 1256-1263. 10.1038/nbt.3704
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Browne, P. et al. (2016) Genomic composition and dynamics among Methanomicrobiales predict adaptation to contrasting environments. ISME J . 10.1038/ismej.2016.104
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Brumm, P. J. et al. (2016) Complete genome sequences of Geobacillus sp. WCH70, a thermophilic strain isolated from wood compost. Stand Genomic Sci 11, 33. 10.1186/s40793-016-0153-y
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Buels, R. et al. (2016) JBrowse: a dynamic web platform for genome visualization and analysis. Genome Biol 17(1), 66. 10.1186/s13059-016-0924-1
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Butterfield, C. N. et al. (2016) Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone. PeerJ 4, e2687. 10.7717/peerj.2687
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Castanera, R. et al. (2016) Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles. PLoS Genet 12(6), e1006108. 10.1371/journal.pgen.1006108
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Chen, I. M. et al. (2016) Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system. BMC Genomics 17(1), 307. 10.1186/s12864-016-2629-y
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Chin, C. S. et al. (2016) Phased diploid genome assembly with single-molecule real-time sequencing. Nat Methods 13(12), 1050-1054. 10.1038/nmeth.4035
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Coleman-Derr, D. et al. (2016) Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species. New Phytol . 10.1111/nph.13697
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Collier, R. et al. (2016) Use of Agrobacterium rhizogenes Strain 18r12v and Paromomycin Selection for Transformation of Brachypodium distachyon and Brachypodium sylvaticum. Front Plant Sci 7, 716. 10.3389/fpls.2016.00716
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Corrochano, L. M. et al. (2016) Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication. Curr Biol . 10.1016/j.cub.2016.04.038
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Daly, R. A. et al. (2016) Microbial metabolisms in a 2.5-km-deep ecosystem created by hydraulic fracturing in shales. Nat Microbiol 1, 16146. 10.1038/nmicrobiol.2016.146
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David, A. S. et al. (2016) Draft Genome Sequence of Microdochium bolleyi, a Dark Septate Fungal Endophyte of Beach Grass. Genome Announc 4(2). 10.1128/genomeA.00270-16
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De Meyer, S. E. et al. (2016) Symbiotic Burkholderia Species Show Diverse Arrangements of nif/fix and nod Genes and Lack Typical High-Affinity Cytochrome cbb3 Oxidase Genes. Mol Plant Microbe Interact 29(8), 609-619. 10.1094/MPMI-05-16-0091-R
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Denef, V. J. et al. (2016) Seasonal Succession Leads to Habitat-Dependent Differentiation in Ribosomal RNA:DNA Ratios among Freshwater Lake Bacteria. Front Microbiol 7, 606. 10.3389/fmicb.2016.00606
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Denef, V. J. et al. (2016) Chloroflexi CL500-11 Populations That Predominate Deep-Lake Hypolimnion Bacterioplankton Rely on Nitrogen-Rich Dissolved Organic Matter Metabolism and C1 Compound Oxidation. Appl Environ Microbiol 82(5), 1423-32. 10.1128/AEM.03014-15
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Dinh Thi, V. H. et al. (2016) Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei. PLoS One 11(12), e0167171. 10.1371/journal.pone.0167171
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Duncan, D. S. et al. (2016) Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods. Soil Biology & Biochemistry 96, 160-168. 10.1016/j.soilbio.2016.02.002
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Eiler, A. et al. (2016) Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria. ISME J . 10.1038/ismej.2015.260
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Eloe-Fadrosh, E. A. et al. (2016) Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs. Nat Commun 7, 10476. 10.1038/ncomms10476
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Eloe-Fadrosh, Emiley A. et al. (2016) Metagenomics uncovers gaps in amplicon-based detection of microbial diversity. Nature Microbiology , 15032. 10.1038/nmicrobiol.2015.32
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Eudes, A. et al. (2016) Exploiting members of the BAHD acyltransferase family to synthesize multiple hydroxycinnamate and benzoate conjugates in yeast. Microb Cell Fact 15(1), 198. 10.1186/s12934-016-0593-5
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Flynn, J. D. et al. (2016) Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems. Genome Announc 4(1). 10.1128/genomeA.01629-15
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Fonseca-Garcia, C. et al. (2016) The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity. Frontiers in Microbiology 7, 150. 10.3389/fmicb.2016.00150
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Frazier, T. P. et al. (2016) Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass. BMC Genomics 17(1), 892. 10.1186/s12864-016-3201-5
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Frei, C. S. et al. (2016) Analysis of Amino Acid Substitutions in AraC Variants that Respond to Triacetic Acid Lactone. Protein Sci . 10.1002/pro.2873
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Fujimoto, Masanori et al. (2016) Spatiotemporal distribution of bacterioplankton functional groups along a freshwater estuary to pelagic gradient in Lake Michigan. Journal of Great Lakes Research -(-), -. 10.1016/j.jglr.2016.07.029
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Gach, P. C. et al. (2016) A Droplet Microfluidic Platform for Automating Genetic Engineering. ACS Synth Biol . 10.1021/acssynbio.6b00011
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Ganji, R. et al. (2016) High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1T Isolated from Great Boiling Spring, Nevada. Genome Announc 4(5). 10.1128/genomeA.01112-16
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Gazis, R. et al. (2016) The genome of Xylona heveae provides a window into fungal endophytism. Fungal Biol 120(1), 26-42. 10.1016/j.funbio.2015.10.002
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Gehlot, H. S. et al. (2016) High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India. Stand Genomic Sci 11, 43. 10.1186/s40793-016-0157-7
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Ghodhbane-Gtari, F. et al. (2016) Permanent Draft Genome Sequence of Nocardia sp. BMG111209, an Actinobacterium Isolated from Nodules of Casuarina glauca. Genome Announc 4(4). 10.1128/genomeA.00770-16
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Ghodhbane-Gtari, F. et al. (2016) Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca. Genome Announc 4(4). 10.1128/genomeA.00799-16
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Goodwin, S. B. et al. (2016) The mitochondrial genome of the ethanol-metabolizing, wine cellar mold Zasmidium cellare is the smallest for a filamentous ascomycete. Fungal Biol 120(8), 961-74. 10.1016/j.funbio.2016.05.003
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Goordial, J. et al. (2016) Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica. FEMS Microbiol Ecol . 10.1093/femsec/fiv154
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Goordial, J. et al. (2016) Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica. Genome Announc 4(2). 10.1128/genomeA.00069-16
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Grabowski, P. P. et al. (2016) Genome-wide associations with flowering time in switchgrass using exome-capture sequencing data. New Phytol . 10.1111/nph.14101
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Gregory, A. C. et al. (2016) Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer. BMC Genomics 17(1), 930. 10.1186/s12864-016-3286-x
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Guibert, L. M. et al. (2016) Diverse Bacterial Groups Contribute to the Alkane Degradation Potential of Chronically Polluted Subantarctic Coastal Sediments. Microb Ecol 71(1), 100-12. 10.1007/s00248-015-0698-0
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Gunsalus, R. P. et al. (2016) Complete genome sequence of Methanospirillum hungatei type strain JF1. Stand Genomic Sci 11, 2. 10.1186/s40793-015-0124-8
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Gupta, V. K. et al. (2016) Biotechnological Innovations through Fungi. Mycosphere 7(10), 1490-1490. 10.5943/mycosphere/si/3b/11
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Gutierrez, T. et al. (2016) Genome Sequence of Marinobacter sp. Strain MCTG268 Isolated from the Cosmopolitan Marine Diatom Skeletonema costatum. Genome Announc 4(5). 10.1128/genomeA.00937-16
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Gutierrez, T. et al. (2016) Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton. Genome Announc 4(4). 10.1128/genomeA.00765-16
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Hahnke, R. L. et al. (2016) Genome-Based Taxonomic Classification of Bacteroidetes. Front Microbiol 7, 2003. 10.3389/fmicb.2016.02003
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Hatzenpichler, R. et al. (2016) Visualizing in situ translational activity for identifying and sorting slow-growing archaeal-bacterial consortia. Proc Natl Acad Sci U S A . 10.1073/pnas.1603757113
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Hausmann, B. et al. (2016) Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms. ISME J 10(10), 2365-75. 10.1038/ismej.2016.42
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Hausmann, B. et al. (2016) Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms. ISME J . 10.1038/ismej.2016.42
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Hillson, N. J. et al. (2016) Improving Synthetic Biology Communication: Recommended Practices for Visual Depiction and Digital Submission of Genetic Designs. ACS Synth Biol 5(6), 449-51. 10.1021/acssynbio.6b00146
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Hirschman, L. et al. (2016) Crowdsourcing and curation: perspectives from biology and natural language processing. Database (Oxford) 2016. 10.1093/database/baw115
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Holmfeldt, K. et al. (2016) Large-scale maps of variable infection efficiencies in aquatic Bacteroidetes phage-host model systems. Environ Microbiol 18(11), 3949-3961. 10.1111/1462-2920.13392
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Holmfeldt, K. et al. (2016) Large-scale maps of variable infection efficiencies in aquatic Bacteroidetes phage-host model systems. Environ Microbiol . 10.1111/1462-2920.13392
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Huntemann, M. et al. (2016) The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4). Stand Genomic Sci 11, 17. 10.1186/s40793-016-0138-x
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Hutchinson, M. I. et al. (2016) Genetics of mating in members of the Chaetomiaceae as revealed by experimental and genomic characterization of reproduction in Myceliophthora heterothallica. Fungal Genet Biol 86, 9-19. 10.1016/j.fgb.2015.11.007
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Hwang, C. et al. (2016) Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds. Genome Announc 4(6). 10.1128/genomeA.01226-16
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Ikeda-Ohtsubo, W. et al. (2016) 'Candidatus Adiutrix intracellularis', an endosymbiont of termite gut flagellates, is the first representative of a deep-branching clade of Deltaproteobacteria and a putative homoacetogen. Environ Microbiol . 10.1111/1462-2920.13234
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Javidpour, P. et al. (2016) Investigation of Proposed Ladderane Biosynthetic Genes from Anammox Bacteria by Heterologous Expression in E. coli. PLoS One 11(3), e0151087. 10.1371/journal.pone.0151087
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Jay, Z. J. et al. (2016) The distribution, diversity and function of predominant Thermoproteales in high-temperature environments of Yellowstone National Park. Environ Microbiol 18(12), 4755-4769. 10.1111/1462-2920.13366
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Kamke, J. et al. (2016) Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation. Microbiome 4(1), 56. 10.1186/s40168-016-0201-2
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Kan, J. et al. (2016) Geochemistry and Mixing Drive the Spatial Distribution of Free-Living Archaea and Bacteria in Yellowstone Lake. Frontiers in Microbiology 7, 210. 10.3389/fmicb.2016.00210
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Kanukollu, S. et al. (2016) Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment. Stand Genomic Sci 11, 25. 10.1186/s40793-016-0143-0
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Kappler, U. et al. (2016) Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing gamma-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477(T)). Stand Genomic Sci 11, 38. 10.1186/s40793-016-0162-x
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Kelly, W. J. et al. (2016) Genomic analysis of three Bifidobacterium species isolated from the calf gastrointestinal tract. Sci Rep 6, 30768. 10.1038/srep30768
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Kim, J. W. et al. (2016) Genome Analysis of Planctomycetes Inhabiting Blades of the Red Alga Porphyra umbilicalis. PLoS One 11(3), e0151883. 10.1371/journal.pone.0151883
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Kyrpides, N. C. et al. (2016) Microbiome Data Science: Understanding Our Microbial Planet. Trends Microbiol 24(6), 425-7. 10.1016/j.tim.2016.02.011
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Lam, K. K. et al. (2016) BIGMAC : breaking inaccurate genomes and merging assembled contigs for long read metagenomic assembly. BMC Bioinformatics 17(1), 435. 10.1186/s12859-016-1288-y
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Lastovetsky, O. A. et al. (2016) Lipid metabolic changes in an early divergent fungus govern the establishment of a mutualistic symbiosis with endobacteria. Proc Natl Acad Sci U S A 113(52), 15102-15107. 10.1073/pnas.1615148113
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Li, G. et al. (2016) Genome-Wide Sequencing of 41 Rice (Oryza sativa L.) Mutated Lines Reveals Diverse Mutations Induced by Fast-Neutron Irradiation. Mol Plant . 10.1016/j.molp.2016.03.009
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Linshiz, G. et al. (2016) End-to-end automated microfluidic platform for synthetic biology: from design to functional analysis. J Biol Eng 10, 3. 10.1186/s13036-016-0024-5
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Louca, S. et al. (2016) Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone. Proc Natl Acad Sci U S A 113(40), E5925-E5933. 10.1073/pnas.1602897113
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Louie, T. S. et al. (2016) High-quality draft genome sequence of Sedimenticola selenatireducens strain AK4OH1T, a gammaproteobacterium isolated from estuarine sediment. Stand Genomic Sci 11, 66. 10.1186/s40793-016-0191-5
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Lovell, J. T. et al. (2016) Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C4 grass. Genome Res 26(4), 510-8. 10.1101/gr.198135.115
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Lux, M. et al. (2016) acdc - Automated Contamination Detection and Confidence estimation for single-cell genome data. BMC Bioinformatics 17(1), 543. 10.1186/s12859-016-1397-7
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Mamidi, S. et al. (2016) Sequence-Based Introgression Mapping Identifies Candidate White Mold Tolerance Genes in Common Bean. Plant Genome 9(2). 10.3835/plantgenome2015.09.0092
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Mefferd, C. C. et al. (2016) High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, China. Genome Announc 4(2). 10.1128/genomeA.00312-16
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Melton, E. D. et al. (2016) Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2(T), a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes. Stand Genomic Sci 11(1), 67. 10.1186/s40793-016-0184-4
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Miettinen, O. et al. (2016) Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2. Genome Announc 4(5). 10.1128/genomeA.00976-16
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Miyauchi, S. et al. (2016) Visual Comparative Omics of Fungi for Plant Biomass Deconstruction. Front Microbiol 7, 1335. 10.3389/fmicb.2016.01335
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Moghaddam, S. M. et al. (2016) Genome-Wide Association Study Identifies Candidate Loci Underlying Agronomic Traits in a Middle American Diversity Panel of Common Bean. Plant Genome 9(3). 10.3835/plantgenome2016.02.0012
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Morales, J. et al. (2016) Development of a toolbox to dissect host-endosymbiont interactions and protein trafficking in the trypanosomatid Angomonas deanei. BMC Evol Biol 16(1), 247. 10.1186/s12862-016-0820-z
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Mosier, A. C. et al. (2016) Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. Frontiers in Microbiology 7, 238. 10.3389/fmicb.2016.00238
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Mukai, T. et al. (2016) Transfer RNAs with novel cloverleaf structures. Nucleic Acids Res . 10.1093/nar/gkw898
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Mukai, T. et al. (2016) Facile Recoding of Selenocysteine in Nature. Angew Chem Int Ed Engl 55(17), 5337-41. 10.1002/anie.201511657
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Nguyen, H. D. et al. (2016) Ochratoxin A production by Penicillium thymicola. Fungal Biol 120(8), 1041-9. 10.1016/j.funbio.2016.04.002
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Nicholson, W. L. et al. (2016) An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1(T). Stand Genomic Sci 11(1), 65. 10.1186/s40793-016-0193-3
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Zhou, E. M. et al. (2016) High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway. Stand Genomic Sci 11, 20. 10.1186/s40793-016-0140-3
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