(2011) Complete genome sequence of Cellulophaga algicola type strain (IC166).
Stand Genomic Sci 4(1), 72-80.
10.4056/sigs.1543845
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(2011) Complete genome sequence of Leadbetterella byssophila type strain (4M15).
Stand Genomic Sci 4(1), 2-12.
10.4056/sigs.1413518
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(2011) Cellulose-degrading bacteria associated with the invasive woodwasp Sirex noctilio.
ISME J 5(8), 1323-31.
10.1038/ismej.2011.14
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(2011) Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber.
Plant Cell 23(7), 2499-513.
10.1105/tpc.111.087189
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(2011) Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88.
Genome Res 21(6), 885-97.
10.1101/gr.112169.110
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(2011) Complete genome sequence of Ferroglobus placidus AEDII12DO.
Stand Genomic Sci 5(1), 50-60.
10.4056/sigs.2225018
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(2011) Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A).
Stand Genomic Sci 4(3), 381-92.
10.4056/sigs.2014648
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(2011) Complete genome sequence of Ferroglobus placidus AEDII12DO.
Stand Genomic Sci 5(1), 50-60.
10.4056/sigs.2225018
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(2011) Novel Insights into the Diversity of Catabolic Metabolism from Ten Haloarchaeal Genomes.
Plos One 6(5).
ARTN e20237
DOI 10.1371/journal.pone.0020237
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(2011) Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1).
Stand Genomic Sci 4(3), 322-30.
10.4056/sigs.1844518
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(2011) The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
Science 332(6032), 960-3.
10.1126/science.1203810
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(2011) Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris.
Nat Biotechnol 29(10), 922-7.
10.1038/nbt.1976
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(2011) Complete genome sequence of Desulfurispirillum indicum strain S5(T).
Stand Genomic Sci 5(3), 371-8.
10.4056/sigs.2425302
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(2011) Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus.
Journal of Bacteriology 193(6), 1483-1484.
Doi 10.1128/Jb.01515-10
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(2011) Complete Genome Sequence of the Aerobic Marine Methanotroph Methylomonas methanica MC09.
Journal of Bacteriology 193(24), 7001-7002.
Doi 10.1128/Jb.06267-11
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(2011) Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide-binding site leucine-rich repeat (NBS-LRR)-rich genomic regions of chromosome 19 in poplar.
New Phytologist 192(1), 151-163.
DOI 10.1111/j.1469-8137.2011.03786.x
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(2011) Complete Genome Sequence of the Haloalkaliphilic, Hydrogen-Producing Bacterium Halanaerobium hydrogeniformans.
Journal of Bacteriology 193(14), 3682-3683.
Doi 10.1128/Jb.05209-11
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(2011) Genome Sequence of the Mercury-Methylating Strain Desulfovibrio desulfuricans ND132.
Journal of Bacteriology 193(8), 2078-2079.
Doi 10.1128/Jb.00170-11
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(2011) Genome sequence of the mercury-methylating strain Desulfovibrio desulfuricans ND132.
J Bacteriol 193(8), 2078-9.
10.1128/JB.00170-11
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(2011) Functional Annotation of Fibrobacter succinogenes S85 Carbohydrate Active Enzymes (vol 163, pg 649, 2011).
Applied Biochemistry and Biotechnology 163(5), 692-692.
DOI 10.1007/s12010-010-9125-7
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(2011) Functional Annotation of Fibrobacter succinogenes S85 Carbohydrate Active Enzymes.
Applied Biochemistry and Biotechnology 163(5), 649-657.
DOI 10.1007/s12010-010-9070-5
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(2011) Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome.
Isme Journal 5(1), 161-164.
DOI 10.1038/ismej.2010.97
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(2011) MicroSyn: a user friendly tool for detection of microsynteny in a gene family.
BMC Bioinformatics 12, 79.
10.1186/1471-2105-12-79
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(2011) Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia-oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names 'Nitrosococcus halophilus' and 'Nitrosomonas mobilis'.
Fems Microbiology Ecology 76(1), 39-48.
DOI 10.1111/j.1574-6941.2010.01027.x
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(2011) The Switchgrass Genome: Tools and Strategies.
Plant Genome 4(3), 273-282.
DOI 10.3835/plantgenome2011.10.0026
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(2011) Excited-state properties of the 16kDa red carotenoid protein from Arthrospira maxima.
Biochim Biophys Acta 1807(1), 30-5.
10.1016/j.bbabio.2010.08.013
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(2011) Genomics for key players in the N cycle from guinea pigs to the next frontier.
Methods Enzymol 496, 289-318.
10.1016/B978-0-12-386489-5.00012-9
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(2011) Genome of Ochrobactrum anthropi ATCC 49188(T), a Versatile Opportunistic Pathogen and Symbiont of Several Eukaryotic Hosts.
Journal of Bacteriology 193(16), 4274-4275.
Doi 10.1128/Jb.05335-11
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(2011) Biological consequences of ancient gene acquisition and duplication in the large genome of Candidatus Solibacter usitatus Ellin6076.
PLoS One 6(9), e24882.
10.1371/journal.pone.0024882
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(2011) Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21).
Stand Genomic Sci 5(1), 97-111.
10.4056/sigs.2114901
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(2011) Meraculous: de novo genome assembly with short paired-end reads.
PLoS One 6(8), e23501.
10.1371/journal.pone.0023501
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(2011) Complete genome sequence of Hirschia baltica type strain (IFAM 1418(T)).
Stand Genomic Sci 5(3), 287-97.
10.4056/sigs.2205004
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(2011) Complete genome sequence of Thermomonospora curvata type strain (B9).
Stand Genomic Sci 4(1), 13-22.
10.4056/sigs.1453580
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(2011) Characterization of a polyketide synthase in Aspergillus niger whose product is a precursor for both dihydroxynaphthalene (DHN) melanin and naphtho-gamma-pyrone.
Fungal Genetics and Biology 48(4), 430-437.
DOI 10.1016/j.fgb.2010.12.001
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(2011) Characterization of a polyketide synthase in Aspergillus niger whose product is a precursor for both dihydroxynaphthalene (DHN) melanin and naphtho-gamma-pyrone.
Fungal Genetics and Biology 48(4), 430-437.
DOI 10.1016/j.fgb.2010.12.001
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(2011) The Ecoresponsive Genome of Daphnia pulex.
Science 331(6017), 555-561.
DOI 10.1126/science.1197761
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(2011) Genome Sequence of the Ethene- and Vinyl Chloride-Oxidizing Actinomycete Nocardioides sp Strain JS614.
Journal of Bacteriology 193(13), 3399-3400.
Doi 10.1128/Jb.05109-11
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(2011) Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11(T)).
Stand Genomic Sci 5(3), 379-88.
10.4056/sigs.2285059
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(2011) Complete genome sequence of Haliscomenobacter hydrossis type strain (O-T).
Standards in Genomic Sciences 4(3), 352-360.
Doi 10.4056/Sigs.1964579
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(2011) Characterization of Trapped Lignin-Degrading Microbes in Tropical Forest Soil.
Plos One 6(4).
ARTN e19306
DOI 10.1371/journal.pone.0019306
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(2011) Novel Structural Elements within the Nonproteolytic Clostridium botulinum Type F Toxin Gene Cluster.
Applied and Environmental Microbiology 77(5), 1904-1906.
Doi 10.1128/Aem.02422-10
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(2011) Trichoderma: the genomics of opportunistic success.
Nat Rev Microbiol 9(10), 749-59.
10.1038/nrmicro2637
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(2011) Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard.
Stand Genomic Sci 4(2), 271-85.
10.4056/sigs.621069
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(2011) Obligate biotrophy features unraveled by the genomic analysis of rust fungi.
Proc Natl Acad Sci U S A 108(22), 9166-71.
10.1073/pnas.1019315108
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(2011) Assemblathon 1: a competitive assessment of de novo short read assembly methods.
Genome Res 21(12), 2224-41.
10.1101/gr.126599.111
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(2011) Assemblathon 1: a competitive assessment of de novo short read assembly methods.
Genome Res 21(12), 2224-41.
10.1101/gr.126599.111
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(2011) The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi.
Science 333(6043), 762-5.
10.1126/science.1205411
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(2011) Massive changes in genome architecture accompany the transition to self-fertility in the filamentous fungus Neurospora tetrasperma.
Genetics 189(1), 55-69.
10.1534/genetics.111.130690
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(2011) Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313.
J Bacteriol 193(11), 2906-7.
10.1128/JB.00322-11
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(2011) The Genomic Standards Consortium.
PLoS Biol 9(6), e1001088.
10.1371/journal.pbio.1001088
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(2011) A second special issue of Standards In Genomic Sciences from the Genomic Standards Consortium.
Stand Genomic Sci 5(2), 194.
10.4056/sigs.2295087
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(2011) Chemical, ultrastructural and supramolecular analysis of tension wood in Populus tremula x alba as a model substrate for reduced recalcitrance.
Energy & Environmental Science 4(12), 4962-4971.
Doi 10.1039/C1ee02073k
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(2011) The Evolution of Host Specialization in the Vertebrate Gut Symbiont Lactobacillus reuteri.
Plos Genetics 7(2).
ARTN e1001314
DOI 10.1371/journal.pgen.1001314
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(2011) Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti.
Bmc Genomics 12.
Artn 235
Doi 10.1186/1471-2164-12-235
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(2011) Comparative Genomics of the Dormancy Regulons in Mycobacteria.
Journal of Bacteriology 193(14), 3446-3452.
Doi 10.1128/Jb.00179-11
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(2011) Genomic signatures of strain selection and enhancement in Bacillus atrophaeus var. globigii, a historical biowarfare simulant.
PLoS One 6(3), e17836.
10.1371/journal.pone.0017836
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(2011) Glycoside Hydrolase Activities of Thermophilic Bacterial Consortia Adapted to Switchgrass.
Applied and Environmental Microbiology 77(16), 5804-5812.
Doi 10.1128/Aem.00032-11
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(2011) Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics.
Proceedings of the National Academy of Sciences of the United States of America 108(11), 4352-4357.
DOI 10.1073/pnas.1016106108
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(2011) Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2(T)).
Standards in Genomic Sciences 4(3), 393-401.
Doi 10.4056/Sigs.2064705
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(2011) Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent.
Stand Genomic Sci 5(3), 407-15.
10.4056/sigs.2465574
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(2011) Complete genome sequence of Isosphaera pallida type strain (IS1B(T)).
Standards in Genomic Sciences 4(1), 63-71.
Doi 10.4056/Sigs.1533840
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(2011) Complete genome sequence of Odoribacter splanchnicus type strain (1651/6(T)).
Standards in Genomic Sciences 4(2), 200-209.
Doi 10.4056/Sigs.1714269
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(2011) Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis.
Plos Genetics 7(6).
ARTN e1002070
DOI 10.1371/journal.pgen.1002070
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(2011) The metagenomic basis of anammox metabolism in Candidatus 'Brocadia fulgida'.
Biochem Soc Trans 39(6), 1799-804.
10.1042/BST20110707
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(2011) The metagenomic basis of anammox metabolism in Candidatus 'Brocadia fulgida'.
Biochemical Society Transactions 39, 1799-1804.
Doi 10.1042/Bst20110707
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(2011) The genome of Tetranychus urticae reveals herbivorous pest adaptations.
Nature 479(7374), 487-92.
10.1038/nature10640
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(2011) The genome of Tetranychus urticae reveals herbivorous pest adaptations.
Nature 479(7374), 487-92.
10.1038/nature10640
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(2011) Fueling the future with fungal genomics.
Mycology 2(3), 192-209.
10.1080/21501203.2011.584577
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(2011) Complete genome sequence of Bacteroides salanitronis type strain (BL78).
Stand Genomic Sci 4(2), 191-9.
10.4056/sigs.1704212
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(2011) Complete genome sequence of Paludibacter propionicigenes type strain (WB4).
Stand Genomic Sci 4(1), 36-44.
10.4056/sigs.1503846
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(2011) Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria.
Stand Genomic Sci 5(3), 269-78.
10.4056/sigs.1854551
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(2011) Genome sequence of Streptomyces griseus strain XylebKG-1, an ambrosia beetle-associated actinomycete.
J Bacteriol 193(11), 2890-1.
10.1128/JB.00330-11
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(2011) Complete genome sequence of Treponema succinifaciens type strain (6091).
Stand Genomic Sci 4(3), 361-70.
10.4056/sigs.1984594
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(2011) Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR).
Stand Genomic Sci 4(3), 371-80.
10.4056/sigs.2004684
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(2011) Complete genome sequence of the metabolically versatile plant growth-promoting endophyte Variovorax paradoxus S110.
J Bacteriol 193(5), 1183-90.
10.1128/JB.00925-10
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(2011) CTCF-mediated functional chromatin interactome in pluripotent cells.
Nat Genet 43(7), 630-8.
10.1038/ng.857
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(2011) Complete genome sequence and updated annotation of Desulfovibrio alaskensis G20.
J Bacteriol 193(16), 4268-9.
10.1128/JB.05400-11
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(2011) Complete genome sequence and updated annotation of Desulfovibrio alaskensis G20.
J Bacteriol 193(16), 4268-9.
10.1128/JB.05400-11
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(2011) A segmental genomic duplication generates a functional intron.
Nat Commun 2, 454.
10.1038/ncomms1461
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(2011) Metagenomic discovery of biomass-degrading genes and genomes from cow rumen.
Science 331(6016), 463-7.
10.1126/science.1200387
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(2011) FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar.
Proc Natl Acad Sci U S A 108(26), 10756-61.
10.1073/pnas.1104713108
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(2011) The Arabidopsis lyrata genome sequence and the basis of rapid genome size change.
Nat Genet 43(5), 476-81.
10.1038/ng.807
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(2011) Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma.
J Allergy Clin Immunol 127(2), 372-381 e1-3.
10.1016/j.jaci.2010.10.048
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(2011) Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH(2)).
Stand Genomic Sci 4(3), 303-11.
10.4056/sigs.1814460
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(2011) Complete genome sequence of Truepera radiovictrix type strain (RQ-24).
Stand Genomic Sci 4(1), 91-9.
10.4056/sigs.1563919
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(2011) Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL).
Stand Genomic Sci 4(3), 312-21.
10.4056/sigs.1824509
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(2011) Sequencing crop genomes: approaches and applications.
New Phytol 191(4), 915-25.
10.1111/j.1469-8137.2011.03804.x
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(2011) Development and initial characterization of a HAPPY panel for mapping the X. tropicalis genome.
Int J Biol Sci 7(7), 1037-44.
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(2011) Draft genome sequence of the thermoalkaliphilic Caldalkalibacillus thermarum strain TA2.A1.
J Bacteriol 193(16), 4290-1.
10.1128/JB.05035-11
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(2011) Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1.
Stand Genomic Sci 5(1), 144-53.
10.4056/sigs.2265047
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(2011) Complete genome sequence of Arthrobacter phenanthrenivorans type strain (Sphe3).
Stand Genomic Sci 4(2), 123-30.
10.4056/sigs.1393494
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(2011) Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1.
Stand Genomic Sci 5(1), 144-53.
10.4056/sigs.2265047
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(2011) Genome sequence of Chthoniobacter flavus Ellin428, an aerobic heterotrophic soil bacterium.
J Bacteriol 193(11), 2902-3.
10.1128/JB.00295-11
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(2011) Genome sequence of "Pedosphaera parvula" Ellin514, an aerobic Verrucomicrobial isolate from pasture soil.
J Bacteriol 193(11), 2900-1.
10.1128/JB.00299-11
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(2011) The GreenCut2 resource, a phylogenomically derived inventory of proteins specific to the plant lineage.
J Biol Chem 286(24), 21427-39.
10.1074/jbc.M111.233734
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(2011) Using BLAST to Teach "E-value-tionary" Concepts.
Plos Biology 9(2).
ARTN e1001014
DOI 10.1371/journal.pbio.1001014
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(2011) High-throughput in vitro glycoside hydrolase (HIGH) screening for enzyme discovery.
Angew Chem Int Ed Engl 50(47), 11215-8.
10.1002/anie.201104685
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(2011) Comparative analysis of carboxysome shell proteins.
Photosynth Res 109(1-3), 21-32.
10.1007/s11120-011-9624-6
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(2011) Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T)).
Stand Genomic Sci 5(3), 356-70.
10.4056/sigs.2194987
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(2011) Draft genome sequence of Streptomyces sp. strain Wigar10, isolated from a surface-sterilized garlic bulb.
J Bacteriol 193(24), 6999-7000.
10.1128/JB.06257-11
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(2011) Draft genome sequence of Streptomyces sp. strain Wigar10, isolated from a surface-sterilized garlic bulb.
J Bacteriol 193(24), 6999-7000.
10.1128/JB.06257-11
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(2011) Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2(T)) and reclassification in the new genus, Kyrpidia gen. nov as Kyrpidia tusciae comb. nov and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010.
Standards in Genomic Sciences 5(1), 121-134.
Doi 10.4056/Sigs.2144922
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(2011) Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae.
J Bacteriol 193(17), 4545-6.
10.1128/JB.05518-11
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(2011) Complete genome sequence of the marine cellulose- and xylan-degrading bacterium Glaciecola sp. strain 4H-3-7+YE-5.
J Bacteriol 193(17), 4547-8.
10.1128/JB.05468-11
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(2011) Tandem termination signal in plant mRNAs.
Gene 481(1), 1-6.
10.1016/j.gene.2011.04.002
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(2011) Genome sequence of the ethanol-producing Zymomonas mobilis subsp. pomaceae lectotype strain ATCC 29192.
J Bacteriol 193(18), 5049-50.
10.1128/JB.05273-11
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(2011) Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.
Genome Biology 12(4).
Artn R40
Doi 10.1186/Gb-2011-12-4-R40
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(2011) Complete genome sequence of Weeksella virosa type strain (9751).
Stand Genomic Sci 4(1), 81-90.
10.4056/sigs.1603927
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(2011) Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10).
Stand Genomic Sci 5(1), 86-96.
10.4056/sigs.2235024
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(2011) Genomes of three methylotrophs from a single niche reveal the genetic and metabolic divergence of the methylophilaceae.
J Bacteriol 193(15), 3757-64.
10.1128/JB.00404-11
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(2011) Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T)).
Stand Genomic Sci 5(3), 398-406.
10.4056/sigs.2344929
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(2011) Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113).
Stand Genomic Sci 5(1), 30-40.
10.4056/sigs.2154937
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(2011) Complete genome sequence of Lactobacillus buchneri NRRL B-30929, a novel strain from a commercial ethanol plant.
J Bacteriol 193(15), 4019-20.
10.1128/JB.05180-11
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(2011) VISTA Region Viewer (RViewer)--a computational system for prioritizing genomic intervals for biomedical studies.
Bioinformatics 27(18), 2595-7.
10.1093/bioinformatics/btr440
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(2011) Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium.
ISME J 5(1), 122-30.
10.1038/ismej.2010.125
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(2011) Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium.
Isme Journal 5(1), 122-130.
DOI 10.1038/ismej.2010.125
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(2011) Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw.
Nature 480(7377), 368-71.
10.1038/nature10576
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(2011) Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw.
Nature 480(7377), 368-71.
10.1038/nature10576
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(2011) Sequencing the fungal tree of life.
New Phytol 190(4), 818-21.
10.1111/j.1469-8137.2011.03688.x
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(2011) Next-generation transcriptome assembly.
Nat Rev Genet 12(10), 671-82.
10.1038/nrg3068
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(2011) Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845).
Stand Genomic Sci 4(2), 144-53.
10.4056/sigs.1553862
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(2011) Rediscovery by Whole Genome Sequencing: Classical Mutations and Genome Polymorphisms in Neurospora crassa.
G3 (Bethesda) 1(4), 303-16.
10.1534/g3.111.000307
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(2011) Crawling through time: Transition of snails to slugs dating back to the Paleozoic, based on mitochondrial phylogenomics.
Marine Genomics 4(1), 51-59.
DOI 10.1016/j.margen.2010.12.006
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(2011) Complete Genome Sequence of the Cellulose-Degrading Bacterium Cellulosilyticum lentocellum.
Journal of Bacteriology 193(9), 2357-2358.
Doi 10.1128/Jb.00239-11
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(2011) Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets.
Standards in Genomic Sciences 4(2), 286-292.
Doi 10.4056/Sigs.1344279
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(2011) Complete genome sequence of Rhodospirillum rubrum type strain (S1(T)).
Standards in Genomic Sciences 4(3), 293-302.
Doi 10.4056/Sigs.1804360
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(2011) Complete genome sequence of Tsukamurella paurometabola type strain (no. 33(T)).
Standards in Genomic Sciences 4(3), 342-351.
Doi 10.4056/Sigs.1894556
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(2011) Complete genome sequence of "Thioalkalivibrio sulfidophilus" HL-EbGr7.
Stand Genomic Sci 4(1), 23-35.
10.4056/sigs.1483693
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(2011) Complete genome sequence of "Thioalkalivibrio sulfidophilus" HL-EbGr7.
Stand Genomic Sci 4(1), 23-35.
10.4056/sigs.1483693
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(2011) Complete genome sequence of Thioalkalivibrio sp. K90mix.
Stand Genomic Sci 5(3), 341-55.
10.4056/sigs.2315092
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(2011) Engineering Escherichia coli for biodiesel production utilizing a bacterial fatty acid methyltransferase.
Appl Environ Microbiol 77(22), 8052-61.
10.1128/AEM.05046-11
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(2011) Genome sequences of Alicycliphilus denitrificans strains BC and K601T.
J Bacteriol 193(18), 5028-9.
10.1128/JB.00365-11
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(2011) Complete genome sequence of Marivirga tractuosa type strain (H-43).
Stand Genomic Sci 4(2), 154-62.
10.4056/sigs.1623941
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(2011) Complete genome sequence of Desulfobulbus propionicus type strain (1pr3).
Stand Genomic Sci 4(1), 100-10.
10.4056/sigs.1613929
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(2011) Genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis lectotype strain ATCC 10988.
J Bacteriol 193(18), 5051-2.
10.1128/JB.05395-11
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(2011) ClaMS: A Classifier for Metagenomic Sequences.
Standards in Genomic Sciences 5(2), 248-253.
Doi 10.4056/Sigs.2075298
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(2011) Complete genome sequence of Cellulophaga lytica type strain (LIM-21).
Stand Genomic Sci 4(2), 221-32.
10.4056/sigs.1774329
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(2011) Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20).
Stand Genomic Sci 5(1), 41-9.
10.4056/sigs.2164949
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(2011) Complete genome sequence of Bacteroides helcogenes type strain (P 36-108).
Stand Genomic Sci 4(1), 45-53.
10.4056/sigs.1513795
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(2011) ClaMS: A Classifier for Metagenomic Sequences.
Stand Genomic Sci 5(2), 248-53.
10.4056/sigs.2075298
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(2011) Complete genome sequence of Oceanithermus profundus type strain (506).
Stand Genomic Sci 4(2), 210-20.
10.4056/sigs.1734292
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(2011) Genome Sequence of "Candidatus Frankia datiscae" Dg1, the Uncultured Microsymbiont from Nitrogen-Fixing Root Nodules of the Dicot Datisca glomerata.
Journal of Bacteriology 193(24), 7017-7018.
Doi 10.1128/Jb.06208-11
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(2011) Genome sequence of "Candidatus Frankia datiscae" Dg1, the uncultured microsymbiont from nitrogen-fixing root nodules of the dicot Datisca glomerata.
J Bacteriol 193(24), 7017-8.
10.1128/JB.06208-11
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(2011) Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1).
Stand Genomic Sci 4(1), 54-62.
10.4056/sigs.1523807
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(2011) Isolation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabies.
Science 333(6042), 646-8.
10.1126/science.1205760
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(2011) Complete genome sequence of Deinococcus maricopensis type strain (LB-34).
Stand Genomic Sci 4(2), 163-72.
10.4056/sigs.1633949
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(2011) Bioenergy feedstock-specific enrichment of microbial populations during high-solids thermophilic deconstruction.
Biotechnol Bioeng 108(9), 2088-98.
10.1002/bit.23176
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(2011) Complete Genome Sequence of a thermotolerant sporogenic lactic acid bacterium, Bacillus coagulans strain 36D1.
Stand Genomic Sci 5(3), 331-40.
10.4056/sigs.2365342
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(2011) Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.
BMC Genomics 12 Suppl 1, S3.
10.1186/1471-2164-12-S1-S3
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(2011) Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190.
J Bacteriol 193(17), 4549-50.
10.1128/JB.00415-11
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(2011) Comparative proteomic profiles of the marine cyanobacterium Trichodesmium erythraeum IMS101 under different nitrogen regimes.
Proteomics 11(3), 406-19.
10.1002/pmic.201000382
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(2011) Complete genome sequence of Parvibaculum lavamentivorans type strain (DS-1(T)).
Stand Genomic Sci 5(3), 298-310.
10.4056/sigs.2215005
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(2011) Novel hydrophobins from Trichoderma define a new hydrophobin subclass: protein properties, evolution, regulation and processing.
J Mol Evol 72(4), 339-51.
10.1007/s00239-011-9438-3
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(2011) Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses.
Bmc Genomics 12.
Artn 570
Doi 10.1186/1471-2164-12-570
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(2011) Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses.
Bmc Genomics 12.
Artn 570
Doi 10.1186/1471-2164-12-570
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(2011) Common Ancestry and Novel Genetic Traits of Francisella novicida-Like Isolates from North America and Australia as Revealed by Comparative Genomic Analyses.
Applied and Environmental Microbiology 77(15), 5110-5122.
Doi 10.1128/Aem.00337-11
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(2011) The complete genome sequence of Thermoproteus tenax: a physiologically versatile member of the Crenarchaeota.
PLoS One 6(10), e24222.
10.1371/journal.pone.0024222
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(2011) The complete genome sequence of Thermoproteus tenax: a physiologically versatile member of the Crenarchaeota.
PLoS One 6(10), e24222.
10.1371/journal.pone.0024222
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(2011) Complete genome sequence of Mahella australiensis type strain (50-1 BON).
Stand Genomic Sci 4(3), 331-41.
10.4056/sigs.1864526
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(2011) Genomic potential of Marinobacter aquaeolei, a biogeochemical "opportunitroph".
Appl Environ Microbiol 77(8), 2763-71.
10.1128/AEM.01866-10
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(2011) Phage encoded H-NS: a potential achilles heel in the bacterial defence system.
PLoS One 6(5), e20095.
10.1371/journal.pone.0020095
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(2011) The GC-Rich Mitochondrial and Plastid Genomes of the Green Alga Coccomyxa Give Insight into the Evolution of Organelle DNA Nucleotide Landscape.
Plos One 6(8).
ARTN e23624
DOI 10.1371/journal.pone.0023624
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(2011) Genome of the cyanobacterium Microcoleus vaginatus FGP-2, a photosynthetic ecosystem engineer of arid land soil biocrusts worldwide.
J Bacteriol 193(17), 4569-70.
10.1128/JB.05138-11
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(2011) Genome sequence of the methanotrophic alphaproteobacterium Methylocystis sp. strain Rockwell (ATCC 49242).
J Bacteriol 193(10), 2668-9.
10.1128/JB.00278-11
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(2011) Lignin content in natural Populus variants affects sugar release.
Proc Natl Acad Sci U S A 108(15), 6300-5.
10.1073/pnas.1009252108
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(2011) Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum.
Genome Biol 12(2), R20.
10.1186/gb-2011-12-2-r20
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(2011) Complete Genome of the Cellulolytic Ruminal Bacterium Ruminococcus albus 7.
Journal of Bacteriology 193(19), 5574-5575.
Doi 10.1128/Jb.05621-11
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(2011) Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7.
J Bacteriol 193(19), 5574-5.
10.1128/JB.05621-11
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(2011) The complete genome sequence of Fibrobacter succinogenes S85 reveals a cellulolytic and metabolic specialist.
PLoS One 6(4), e18814.
10.1371/journal.pone.0018814
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(2011) Genome sequence of Nitrosomonas sp. strain AL212, an ammonia-oxidizing bacterium sensitive to high levels of ammonia.
J Bacteriol 193(18), 5047-8.
10.1128/JB.05521-11
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(2011) Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96.
J Bacteriol 193(22), 6418-9.
10.1128/JB.05380-11
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(2011) Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96.
J Bacteriol 193(22), 6418-9.
10.1128/JB.05380-11
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(2011) Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean.
Science 333(6047), 1296-1300.
DOI 10.1126/science.1203690
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(2011) Analysis of leaf and root transcriptomes of soil-grown Avena barbata plants.
Plant Cell Physiol 52(2), 317-32.
10.1093/pcp/pcq188
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(2011) Genome sequence of Thermotoga sp. strain RQ2, a hyperthermophilic bacterium isolated from a geothermally heated region of the seafloor near Ribeira Quente, the Azores.
J Bacteriol 193(20), 5869-70.
10.1128/JB.05923-11
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(2011) Genome Sequence of Kosmotoga olearia Strain TBF 19.5.1, a Thermophilic Bacterium with a Wide Growth Temperature Range, Isolated from the Troll B Oil Platform in the North Sea.
Journal of Bacteriology 193(19), 5566-5567.
Doi 10.1128/Jb.05828-11
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(2011) Genome sequence of Kosmotoga olearia strain TBF 19.5.1, a thermophilic bacterium with a wide growth temperature range, isolated from the Troll B oil platform in the North Sea.
J Bacteriol 193(19), 5566-7.
10.1128/JB.05828-11
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(2011) Genome sequence of Thermotoga sp. strain RQ2, a hyperthermophilic bacterium isolated from a geothermally heated region of the seafloor near Ribeira Quente, the Azores.
J Bacteriol 193(20), 5869-70.
10.1128/JB.05923-11
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(2011) Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus.
BMC Genomics 12, 334.
10.1186/1471-2164-12-334
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(2011) Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems.
J Bacteriol 193(9), 2367-8.
10.1128/JB.00228-11
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(2011) Genome sequence of Victivallis vadensis ATCC BAA-548, an anaerobic bacterium from the phylum Lentisphaerae, isolated from the human gastrointestinal tract.
J Bacteriol 193(9), 2373-4.
10.1128/JB.00271-11
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(2011) The Genome of Akkermansia muciniphila, a Dedicated Intestinal Mucin Degrader, and Its Use in Exploring Intestinal Metagenomes.
Plos One 6(3).
ARTN e16876
DOI 10.1371/journal.pone.0016876
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(2011) Significant alteration of gene expression in wood decay fungi Postia placenta and Phanerochaete chrysosporium by plant species.
Appl Environ Microbiol 77(13), 4499-507.
10.1128/AEM.00508-11
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(2011) Complete genome sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b.
J Bacteriol 193(11), 2880-1.
10.1128/JB.00303-11
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(2011) Complete genome sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b.
J Bacteriol 193(11), 2880-1.
10.1128/JB.00303-11
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(2011) Rapid evolution of coral proteins responsible for interaction with the environment.
PLoS One 6(5), e20392.
10.1371/journal.pone.0020392
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(2011) Complete genome sequence of the plant growth-promoting endophyte Burkholderia phytofirmans strain PsJN.
J Bacteriol 193(13), 3383-4.
10.1128/JB.05055-11
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(2011) Complete genome sequence of Allochromatium vinosum DSM 180(T).
Stand Genomic Sci 5(3), 311-30.
10.4056/sigs.2335270
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(2011) Complete genome sequence of Desulfurococcus mucosus type strain (O7/1).
Stand Genomic Sci 4(2), 173-82.
10.4056/sigs.1644004
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(2011) Comparative genomics of xylose-fermenting fungi for enhanced biofuel production.
Proc Natl Acad Sci U S A 108(32), 13212-7.
10.1073/pnas.1103039108
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(2011) Decontamination of MDA reagents for single cell whole genome amplification.
PLoS One 6(10), e26161.
10.1371/journal.pone.0026161
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(2011) Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262(T)).
Standards in Genomic Sciences 5(1), 21-29.
Doi 10.4056/Sigs.2124912
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(2011) Decontamination of MDA Reagents for Single Cell Whole Genome Amplification.
Plos One 6(10).
ARTN e26161
DOI 10.1371/journal.pone.0026161
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(2011) Discovery and annotation of small proteins using genomics, proteomics, and computational approaches.
Genome Research 21(4), 634-641.
DOI 10.1101/gr.109280.110
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(2011) Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics.
Plant Science 181(6), 675-687.
DOI 10.1016/j.plantsci.2011.01.020
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(2011) Comparative analysis of GT14/GT14-like gene family in Arabidopsis, Oryza, Populus, Sorghum and Vitis.
Plant Science 181(6), 688-695.
DOI 10.1016/j.plantsci.2011.01.021
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(2011) The genomic standards consortium: bringing standards to life for microbial ecology.
ISME J 5(10), 1565-7.
10.1038/ismej.2011.39
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(2011) Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.
Nature Biotechnology 29(5), 415-420.
Doi 10.1038/Nbt.1823
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(2011) Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6).
Stand Genomic Sci 4(2), 131-43.
10.4056/sigs.1463589
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(2011) Identification of a haloalkaliphilic and thermostable cellulase with improved ionic liquid tolerance.
Green Chemistry 13(8), 2083-2090.
Doi 10.1039/C1gc15193b
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(2011) Complete genome sequence of the anaerobic, halophilic alkalithermophile Natranaerobius thermophilus JW/NM-WN-LF.
J Bacteriol 193(15), 4023-4.
10.1128/JB.05157-11
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