2023 Publications

(2023) Fast and accurate identification of plasmids and viruses in sequencing data using geNomad. Nature Biotechnology , 1-2. 10.1038/s41587-023-01982-7
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Adriaenssens, Evelien M. et al. (2023) Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification. Nature Biotechnology 41(7), 898-902. 10.1038/s41587-023-01844-2
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Akparov, Zeynal et al. (2023) Two major chromosome evolution events with unrivaled conserved gene content in pomegranate. Frontiers in Plant Science 14, 1039211. 10.3389/fpls.2023.1039211
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AminiTabrizi, Roya et al. (2023) Microbial sensitivity to temperature and sulfate deposition modulates greenhouse gas emissions from peat soils. Global Change Biology 29(7), 1951-1970. 10.1111/gcb.16614
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Amses, Kevin et al. (2023) Convergent reductive evolution and host adaptation in Mycoavidus bacterial endosymbionts of Mortierellaceae fungi. Fungal Genetics and Biology 169, 103838. 10.1016/j.fgb.2023.103838
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Amundson, Kaela K et al. (2023) Long-term CRISPR locus dynamics and stable host-virus co-existence in subsurface fractured shales. Current Biology . 10.1016/j.cub.2023.06.033
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Anstett, Julia et al. (2023) A compendium of bacterial and archaeal single-cell amplified genomes from oxygen deficient marine waters. Scientific Data 10(1), 332. 10.1038/s41597-023-02222-y
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Auer, Lucas et al. (2023) Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems. New Phytologist . 10.1111/nph.19471
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Babaei, Mahsa et al. (2023) Coupling High-Throughput and Targeted Screening for Identification of Nonobvious Metabolic Engineering Targets. ACS Synthetic Biology 13(1), 168-182. 10.1021/acssynbio.3c00396
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Back, Daniel et al. (2023) Identification, Heterologous Expression, and Characterization of the Tolypodiol Biosynthetic Gene Cluster through an Integrated Approach. ACS Chemical Biology 18(8), 1797-1807. 10.1021/acschembio.3c00225
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Bader, Jonathan et al. (2023) Novel Approaches Toward Scalable Composable Workflows in Hyper-Heterogeneous Computing Environments. , 2097-2108. 10.1145/3624062.3626283
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Baker, Christopher R. et al. (2023) Metabolomic, photoprotective, and photosynthetic acclimatory responses to post‐flowering drought in sorghum. Plant Direct 7(11), e545. 10.1002/pld3.545
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Baltoumas, Fotis A et al. (2023) NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes. Nucleic Acids Research 52(D1), d502-d512. 10.1093/nar/gkad800
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Baltoumas, Fotis A. et al. (2023) Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters. Frontiers in Bioinformatics 3, 1157956. 10.3389/fbinf.2023.1157956
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Barnett, Samuel E. et al. (2023) Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing. mBio 14(2), e03584-22. 10.1128/mbio.03584-22
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Barnett, Samuel E. et al. (2023) Metagenomic stable isotope probing reveals bacteriophage participation in soil carbon cycling. Environmental Microbiology . 10.1111/1462-2920.16395
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Barrett, Kristian et al. (2023) Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.. Nucleic Acids Research 51(W1), w108-w114. 10.1093/nar/gkad385
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Bhaskara, Govinal Badiger et al. (2023) Evolutionary Analyses of Gene Expression Divergence in Panicum hallii: Exploring Constitutive and Plastic Responses Using Reciprocal Transplants. Molecular Biology and Evolution 40(10), msad210. 10.1093/molbev/msad210
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Bhattacharjee, Ananda S. et al. (2023) Genomics discovery of giant fungal viruses from subsurface oceanic crustal fluids. ISME Communications 3(1), 10. 10.1038/s43705-022-00210-8
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Bieniada, Aneta et al. (2023) Methane Cycling Microbial Community Characteristics: Comparing Natural, Actively Extracted, Restored and Unrestored Boreal Peatlands. Wetlands 43(7), 83. 10.1007/s13157-023-01726-y
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Bittremieux, Wout et al. (2023) Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics. Nature Communications 14(1), 8488. 10.1038/s41467-023-44035-y
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Blaby-Haas, Crysten E. et al. (2023) Chapter 5 Trace metal nutrition and response to deficiency. , 167-203. 10.1016/b978-0-12-821430-5.00002-x
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Blaby, Ian K. et al. (2023) Chapter 4 Functional genomics of Chlamydomonas reinhardtii. , 65-84. 10.1016/b978-0-12-822457-1.00013-3
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Blum, Laura N. et al. (2023) Distribution and abundance of tetraether lipid cyclization genes in terrestrial hot springs reflect pH. Environmental Microbiology . 10.1111/1462-2920.16375
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Booker, Anne E. et al. (2023) Life strategies for Aminicenantia in subseafloor oceanic crust. The ISME Journal: Multidisciplinary Journal of Microbial Ecology , 1-10. 10.1038/s41396-023-01454-5
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Bowen, Jennifer L. et al. (2023) Microbial Ecology in a Changing Climate. , 289-314. 10.1201/9781003126096-18
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Bowers, Robert M. et al. (2023) Gone with a trace: cataloguing the disappearing gut microbes. Nature Reviews Microbiology , 1-1. 10.1038/s41579-023-00968-1
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Brainard, Scott H. et al. (2023) The first two chromosome‐scale genome assemblies of American hazelnut enable comparative genomic analysis of the genus Corylus. Plant Biotechnology Journal . 10.1111/pbi.14199
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Brown, Jennifer L. et al. (2023) High-quality RNA extraction and the regulation of genes encoding cellulosomes are correlated with growth stage in anaerobic fungi. Frontiers in Fungal Biology 4, 1171100. 10.3389/ffunb.2023.1171100
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Brown, Malory O. et al. (2023) Sterol methyltransferases in uncultured bacteria complicate eukaryotic biomarker interpretations. Nature Communications 14(1), 1859. 10.1038/s41467-023-37552-3
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Buessecker, Steffen et al. (2023) Mcr-dependent methanogenesis in Archaeoglobaceae enriched from a terrestrial hot spring. The ISME Journal: Multidisciplinary Journal of Microbial Ecology 17(10), 1649-1659. 10.1038/s41396-023-01472-3
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Bunbury, Freddy et al. (2023) Shedding light on spatial structure and dynamics in phototrophic biofilms. Current Opinion in Systems Biology 36, 100480. 10.1016/j.coisb.2023.100480
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Caddell, Daniel et al. (2023) Drought shifts sorghum root metabolite and microbiome profiles and enriches for pipecolic acid. Phytobiomes Journal . 10.1094/pbiomes-02-23-0011-r
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Camargo, Antonio Pedro et al. (2023) Identification of mobile genetic elements with geNomad. Nature Biotechnology , 1-10. 10.1038/s41587-023-01953-y
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Camargo, Antonio Pedro et al. (2023) IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic Acids Research 52(D1), d164-d173. 10.1093/nar/gkad964
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Carr, Erin C et al. (2023) Characterization of a novel polyextremotolerant fungus, Exophiala viscosa, with insights into its melanin regulation and ecological niche.. G3: Genes, Genomes, Genetics . 10.1093/g3journal/jkad110
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Chai, Yen Ning et al. (2023) Root-associated bacterial communities and root metabolite composition are linked to nitrogen use efficiency in sorghum. mSystems 9(1), e01190-23. 10.1128/msystems.01190-23
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Chan, Clara S. et al. (2023) Gallionellaceae in rice root plaque: metabolic roles in iron oxidation, nutrient cycling, and plant interactions. Applied and Environmental Microbiology 89(12), e00570-23. 10.1128/aem.00570-23
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Chemelewski, Robert et al. (2023) Epicuticular wax accumulation and regulation of wax pathway gene expression during bioenergy Sorghum stem development. Frontiers in Plant Science 14, 1227859. 10.3389/fpls.2023.1227859
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Chen, Yen-Ho et al. (2023) Multiplex Editing of the Nucleoredoxin1 Tandem Array in Poplar: From Small Indels to Translocations and Complex Inversions. The CRISPR Journal . 10.1089/crispr.2022.0096
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Chiang, Chang-Hwa et al. (2023) Deciphering the evolution of flavin-dependent monooxygenase stereoselectivity using ancestral sequence reconstruction. Proceedings of the National Academy of Sciences of the United States of America 120(15), e2218248120. 10.1073/pnas.2218248120
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Chiu, Beverly K. et al. (2023) Membrane lipid and expression responses of Saccharolobus islandicus REY15A to acid and cold stress. Frontiers in Microbiology 14, 1219779. 10.3389/fmicb.2023.1219779
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Coclet, Clement et al. (2023) Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem. Microbiome 11(1), 237. 10.1186/s40168-023-01666-z
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Collier, Jackie L et al. (2023) The protist Aurantiochytrium has universal subtelomeric rDNAs and is a host for mirusviruses. Current Biology 33(23), 5199-5207.e4. 10.1016/j.cub.2023.10.009
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Coutinho, Felipe H. et al. (2023) Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities. Microbiome 11(1), 118. 10.1186/s40168-023-01547-5
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Crandall, Johnathan G. et al. (2023) Ploidy evolution in a wild yeast is linked to an interaction between cell type and metabolism. PLOS Biology 21(11), e3001909. 10.1371/journal.pbio.3001909
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Davidi, Lital et al. (2023) Pumping iron: A multi-omics analysis of two extremophilic algae reveals iron economy management. Proceedings of the National Academy of Sciences of the United States of America 120(30), e2305495120. 10.1073/pnas.2305495120
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Davidson, Russell B et al. (2023) Predicted structural proteome of Sphagnum divinum and proteome-scale annotation. Bioinformatics 39(8), btad511. 10.1093/bioinformatics/btad511
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de Mesquita, Clifton P. Bueno et al. (2023) Methyl-Based Methanogenesis: an Ecological and Genomic Review. Microbiology and Molecular Biology Reviews 87(1), e00024-22. 10.1128/mmbr.00024-22
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de Oliveira, Camilla Martins et al. (2023) Trichoderma harzianum transcriptome in response to the nematode Pratylenchus brachyurus. Biological Control 183, 105245. 10.1016/j.biocontrol.2023.105245
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de Raad, Markus et al. (2023) Mass spectrometry imaging–based assays for aminotransferase activity reveal a broad substrate spectrum for a previously uncharacterized enzyme. Journal of Biological Chemistry 299(3), 102939. 10.1016/j.jbc.2023.102939
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Devos, Katrien M. et al. (2023) Genome analyses reveal population structure and a purple stigma color gene candidate in finger millet. Nature Communications 14(1), 3694. 10.1038/s41467-023-38915-6
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Diesel, Jose et al. (2023) A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera). BMC Genomics 24(1), 543. 10.1186/s12864-023-09658-x
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Dort, E. N. et al. (2023) Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits. Scientific Reports 13(1), 17203. 10.1038/s41598-023-44005-w
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Dubinkina, Veronika et al. (2023) A transcriptomic atlas of acute stress response to low pH in multiple Issatchenkia orientalis strains. Microbiology Spectrum 12(1), e02536-23. 10.1128/spectrum.02536-23
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Duncan, Anthony et al. (2023) Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms. Data in Brief 47, 108990. 10.1016/j.dib.2023.108990
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Džunková, Mária et al. (2023) Synthase-selected sorting approach identifies a beta-lactone synthase in a nudibranch symbiotic bacterium. Microbiome 11(1), 130. 10.1186/s40168-023-01560-8
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Edwards, Joseph A et al. (2023) Genetic determinants of switchgrass-root-associated microbiota in field sites spanning its natural range. Current Biology 33(10), 1926-1938.e6. 10.1016/j.cub.2023.03.078
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Ellenbogen, Jared B. et al. (2023) Methylotrophy in the Mire: direct and indirect routes for methane production in thawing permafrost. mSystems 9(1), e00698-23. 10.1128/msystems.00698-23
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Eme, Laura et al. (2023) Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes. Nature 618(7967), 992-999. 10.1038/s41586-023-06186-2
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Eng, Ashley Y. et al. (2023) Thermal adaptation of soil microbial growth traits in response to chronic warming. Applied and Environmental Microbiology 89(11), e00825-23. 10.1128/aem.00825-23
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Esser, Sarah P. et al. (2023) A predicted CRISPR-mediated symbiosis between uncultivated archaea. Nature Microbiology 8(9), 1619-1633. 10.1038/s41564-023-01439-2
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Ettinger, Cassandra L. et al. (2023) Highly diverse and unknown viruses may enhance Antarctic endoliths’ adaptability. Microbiome 11(1), 103. 10.1186/s40168-023-01554-6
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Fernandes‐Martins, Maria C. et al. (2023) Relationships between fluid mixing, biodiversity, and chemosynthetic primary productivity in Yellowstone hot springs. Environmental Microbiology 25(5), 1022-1040. 10.1111/1462-2920.16340
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Fernández-González, Antonio J. et al. (2023) Long-Term Persistence of Three Microbial Wildfire Biomarkers in Forest Soils. Forests 14(7), 1383. 10.3390/f14071383
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Feurtey, Alice et al. (2023) A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen. Nature Communications 14(1), 1059. 10.1038/s41467-023-36674-y
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Foreman, Christine M. et al. (2023) Seven genome sequences of bacterial, environmental isolates from Pony Lake, Antarctica. Microbiology Resource Announcements 13(1), e00744-23. 10.1128/mra.00744-23
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Francin-Allami, Mathilde et al. (2023) Mixed-Linkage Glucan Is the Main Carbohydrate Source and Starch Is an Alternative Source during Brachypodium Grain Germination. International Journal of Molecular Sciences 24(7), 6821. 10.3390/ijms24076821
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Fremin, Brayon J. et al. (2023) Identification of over ten thousand candidate structured RNAs in viruses and phages. Computational and Structural Biotechnology Journal 21, 5630-5639. 10.1016/j.csbj.2023.11.010
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Gauttam, Rahul et al. (2023) Development of genetic tools for heterologous protein expression in a pentose‐utilizing environmental isolate of Pseudomonas putida. Microbial Biotechnology 16(3), 645-661. 10.1111/1751-7915.14205
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George, Nikhil A. et al. (2023) CRISPR-resolved virus-host interactions in a municipal landfill include non-specific viruses, hyper-targeted viral populations, and interviral conflicts. Scientific Reports 13(1), 5611. 10.1038/s41598-023-32078-6
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Gilbert, Naomi E. et al. (2023) Giant Virus Infection Signatures Are Modulated by Euphotic Zone Depth Strata and Iron Regimes of the Subantarctic Southern Ocean. mSystems 8(2), e01260-22. 10.1128/msystems.01260-22
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Gopal, Madan R. et al. (2023) Reductive Enzyme Cascades for Valorization of Polyethylene Terephthalate Deconstruction Products. ACS Catalysis 13(7), 4778-4789. 10.1021/acscatal.2c06219
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Green, Stefan J. et al. (2023) Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report. Astrobiology . 10.1089/ast.2022.0044
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Grosjean, Nicolas et al. (2023) Whisperings from not so silent mutations. Nature Reviews Microbiology 21(4), 221-221. 10.1038/s41579-023-00864-8
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Gryganskyi, Andrii P. et al. (2023) Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned?. Microorganisms 11(7), 1830. 10.3390/microorganisms11071830
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Guerillot, Pamela et al. (2023) A Remarkable Expansion of Oligopeptide Transporter Genes in Rust Fungi (Pucciniales) Suggests a Specialization in Nutrient Acquisition for Obligate Biotrophy.. Phytopathology 113(2), 252-264. 10.1094/phyto-04-22-0128-r
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Gupta, Yogesh K. et al. (2023) Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi. Nature Communications 14(1), 1835. 10.1038/s41467-023-37551-4
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Hage, Hayat et al. (2023) An HMM approach expands the landscape of sesquiterpene cyclases across the kingdom Fungi. Microbial Genomics 9(4), mgen000990. 10.1099/mgen.0.000990
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Hammack, Aeron Tynes et al. (2023) Machine learning sheds light on microbial dark proteins. Nature Reviews Microbiology 22(2), 63-63. 10.1038/s41579-023-01002-0
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Haridas, Sajeet et al. (2023) T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats. mBio 14(2), e00261-23. 10.1128/mbio.00261-23
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Harwood, Thomas V. et al. (2023) BLINK enables ultrafast tandem mass spectrometry cosine similarity scoring. Scientific Reports 13(1), 13462. 10.1038/s41598-023-40496-9
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He, Shaomei et al. (2023) Diversity, distribution, and expression of opsin genes in freshwater lakes. Molecular Ecology 32(11), 2798-2817. 10.1111/mec.16891
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Healey, Adam L. et al. (2023) Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics. Nature Plants 9(2), 238-254. 10.1038/s41477-022-01333-5
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Hehenberger, Elisabeth et al. (2023) Phosphate Limitation Responses in Marine Green Algae Are Linked to Reprogramming of the tRNA Epitranscriptome and Codon Usage Bias. Molecular Biology and Evolution 40(12), msad251. 10.1093/molbev/msad251
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Hensen, Noah et al. (2023) Genome-scale phylogeny and comparative genomics of the fungal order Sordariales. Molecular Phylogenetics and Evolution 189, 107938. 10.1016/j.ympev.2023.107938
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Hildebrand, Gina A et al. (2023) Uncovering the dominant role of root metabolism in shaping rhizosphere metabolome under drought in tropical rainforest plants. The Science of The Total Environment 899, 165689. 10.1016/j.scitotenv.2023.165689
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Hill, Thomas C. J. et al. (2023) Resolving the controls over the production and emission of ice-nucleating particles in sea spray. Environmental Science Atmospheres 3(6), 970-990. 10.1039/d2ea00154c
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Ho, Harrison et al. (2023) Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning. PeerJ 11, e16129. 10.7717/peerj.16129
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Honeker, Linnea K. et al. (2023) Drought re-routes soil microbial carbon metabolism towards emission of volatile metabolites in an artificial tropical rainforest. Nature Microbiology 8(8), 1480-1494. 10.1038/s41564-023-01432-9
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Hooker, Casey A. et al. (2023) A Genetic Engineering Toolbox for the Lignocellulolytic Anaerobic Gut Fungus Neocallimastix frontalis. ACS Synthetic Biology 12(4), 1034-1045. 10.1021/acssynbio.2c00502
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Howe, Adina et al. (2023) Seasonal activities of the phyllosphere microbiome of perennial crops. Nature Communications 14(1), 1039. 10.1038/s41467-023-36515-y
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Hwang, Yunha et al. (2023) Viruses interact with hosts that span distantly related microbial domains in dense hydrothermal mats. Nature Microbiology 8(5), 946-957. 10.1038/s41564-023-01347-5
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Hyden, Brennan et al. (2023) Functional analysis of Salix purpurea genes support roles for ARR17 and GATA15 as master regulators of sex determination. Plant Direct 7(11), e3546. 10.1002/pld3.546
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Ionescu, Danny et al. (2023) Genomic Mysteries of Giant Bacteria: Insights and Implications. Genome Biology and Evolution 15(9), evad163. 10.1093/gbe/evad163
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Jagtap, Sujit Sadashiv et al. (2023) Draft genome sequence of Yarrowia lipolytica NRRL Y-64008, an oleaginous yeast capable of growing on lignocellulosic hydrolysates. Microbiology Resource Announcements 12(12), e00435-23. 10.1128/mra.00435-23
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Jagtap, Sujit Sadashiv et al. (2023) Near-complete genome sequence of Lipomyces tetrasporous NRRL Y-64009, an oleaginous yeast capable of growing on lignocellulosic hydrolysates. Microbiology Resource Announcements 12(11), e00426-23. 10.1128/mra.00426-23
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Jiao, Yinping et al. (2023) A large sequenced mutant library – valuable reverse genetic resource that covers 98% of sorghum genes. The Plant Journal . 10.1111/tpj.16582
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Jones, David T. et al. (2023) Solvent-Producing Clostridia Revisited. Microorganisms 11(9), 2253. 10.3390/microorganisms11092253
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Ke, Yi-Hong et al. (2023) Genomic determination of breeding systems and trans-specific evolution of HD MAT genes in suilloid fungi.. Genetics 224(2). 10.1093/genetics/iyad069
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Khachaturyan, Marina et al. (2023) Worldwide Population Genomics Reveal Long-Term Stability of the Mitochondrial Genome Architecture in a Keystone Marine Plant. Genome Biology and Evolution 15(9), evad167. 10.1093/gbe/evad167
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Khalfaoui-Hassani, Bahia et al. (2023) The Escherichia coli MFS-type transporter genes yhjE, ydiM, and yfcJ are required to produce an active bo3 quinol oxidase. PLOS ONE 18(10), e0293015. 10.1371/journal.pone.0293015
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Khasanova, Albina et al. (2023) Quantitative genetic-by-soil microbiome interactions in a perennial grass affect functional traits. Proceedings of the Royal Society B 290(1991), 20221350. 10.1098/rspb.2022.1350
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Kieft, Brandon et al. (2023) Genome-resolved correlation mapping links microbial community structure to metabolic interactions driving methane production from wastewater. Nature Communications 14(1), 5380. 10.1038/s41467-023-40907-5
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Klonowska, Agnieszka et al. (2023) Discovery of a novel filamentous prophage in the genome of the Mimosa pudica microsymbiont Cupriavidus taiwanensis STM 6018. Frontiers in Microbiology 14, 1082107. 10.3389/fmicb.2023.1082107
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Koedooder, Coco et al. (2023) Taxonomic distribution of metabolic functions in bacteria associated with Trichodesmium consortia. mSystems 8(6), e00742-23. 10.1128/msystems.00742-23
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Kuch, Nathaniel J. et al. (2023) Contribution of calcium ligands in substrate binding and product release in the Acetovibrio thermocellus glycoside hydrolase family 9 cellulase CelR. Journal of Biological Chemistry 299(5), 104655. 10.1016/j.jbc.2023.104655
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Kun, Roland S et al. (2023) The transcriptional activator ClrB is crucial for the degradation of soybean hulls and guar gum in Aspergillus niger. Fungal Genetics and Biology 165, 103781. 10.1016/j.fgb.2023.103781
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Kun, Roland S et al. (2023) The Amylolytic Regulator AmyR of Aspergillus niger Is Involved in Sucrose and Inulin Utilization in a Culture-Condition-Dependent Manner. Journal of Fungi 9(4), 438. 10.3390/jof9040438
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Kunakom, Sylvia et al. (2023) Cytochromes P450 involved in bacterial RiPP biosyntheses. Journal of Industrial Microbiology & Biotechnology 50(1), kuad005. 10.1093/jimb/kuad005
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Lagergren, John et al. (2023) Few-Shot Learning Enables Population-Scale Analysis of Leaf Traits in Populus trichocarpa. Plant Phenomics 5, 0072. 10.34133/plantphenomics.0072
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Landa, Mirna Vázquez Rosas et al. (2023) Exploring novel alkane-degradation pathways in uncultured bacteria from the North Atlantic Ocean. mSystems , e00619-23. 10.1128/msystems.00619-23
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Lankiewicz, Thomas S. et al. (2023) Lignin deconstruction by anaerobic fungi. Nature Microbiology 8(4), 596-610. 10.1038/s41564-023-01336-8
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Lee, Benjamin D. et al. (2023) Mining metatranscriptomes reveals a vast world of viroid-like circular RNAs. Cell 186(3), 646-661.e4. 10.1016/j.cell.2022.12.039
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Lee, Seung Hwan et al. (2023) Identification of 2‑Hydroxyacyl-CoA Synthases with High Acyloin Condensation Activity for Orthogonal One-Carbon Bioconversion. ACS Catalysis 13(18), 12007-12020. 10.1021/acscatal.3c02373
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Lei, Li et al. (2023) The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum. G3: Genes, Genomes, Genetics 14(1), jkad245. 10.1093/g3journal/jkad245
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Leng, Yueqiang et al. (2023) A telomere-to-telomere genome assembly resource of Bipolaris sorokiniana, the fungal pathogen causing spot blotch and common root rot diseases in barley and wheat. PhytoFrontiers™ . 10.1094/phytofr-08-23-0108-a
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Li, Jiajia et al. (2023) Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi. Journal of Fungi 9(8), 860. 10.3390/jof9080860
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Li, Ye et al. (2023) Plasmid Copy Number Engineering Accelerates Fungal Polyketide Discovery upon Unnatural Polyketide Biosynthesis. ACS Synthetic Biology 12(8), 2226-2235. 10.1021/acssynbio.3c00178
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Liang, Qihua et al. (2023) A view of the pan‐genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.). The Plant Genome , e20319. 10.1002/tpg2.20319
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Lillington, Stephen P et al. (2023) Expression and characterization of spore coat CotH kinases from the cellulosomes of anaerobic fungi (Neocallimastigomycetes). Protein Expression and Purification 210, 106323. 10.1016/j.pep.2023.106323
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Lin, Alex Y W et al. (2023) Statistical 3D morphology characterization of vaterite microspheres produced by engineered Escherichia coli. Biomaterials Advances 156, 213711. 10.1016/j.bioadv.2023.213711
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Liu, Xiuping et al. (2023) Comparative Genomic Analyses of Cellulolytic Machinery Reveal Two Nutritional Strategies of Marine Labyrinthulomycetes Protists. Microbiology Spectrum 11(2), e04247-22. 10.1128/spectrum.04247-22
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Longley, Reid et al. (2023) Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi. Communications Biology 6(1), 948. 10.1038/s42003-023-05299-8
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Lynes, Mackenzie M. et al. (2023) Diversity and function of methyl-coenzyme M reductase-encoding archaea in Yellowstone hot springs revealed by metagenomics and mesocosm experiments. ISME Communications 3(1), 22. 10.1038/s43705-023-00225-9
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