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    Maize can produce a cocktail of antibiotics with a handful of enzymes. (Sam Fentress, CC BY-SA 2.0)
    How Maize Makes An Antibiotic Cocktail
    Zealexins are produced in every corn variety and protect maize by fending off fungal and microbial infections using surprisingly few enzymes.

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    The genome of the common fiber vase or Thelephora terrestris was among those used in the study. (Francis Martin)
    From Competition to Cooperation
    By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how saprotrophs have transitioned to the symbiotic lifestyle.

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    Miscanthus grasses. (Roy Kaltschmidt/Berkeley Lab)
    A Grass Model to Help Improve Giant Miscanthus
    The reference genome for M. sinensis, and the associated genomic tools, allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such as sugarcane and sorghum.

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    Poplar (Populus trichocarpa and P. deltoides) grow in the Advanced Plant Phenotyping Laboratory (APPL) at Oak Ridge National Laboratory in Tennessee. Poplar is an important biofuel feedstock, and Populus trichocarpa is the first tree species to have its genome sequenced — a feat accomplished by JGI. (Image courtesy of Oak Ridge National Laboratory, U.S. Dept. of Energy)
    Podcast: Xiaohan Yang on A Plantiful Future
    Building off plant genomics collaborations between the JGI and Oak Ridge National Laboratory, Xiaohan Yang envisions customizing plants for the benefit of human society.

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    Expansin complex with cell wall in background. (Courtesy of Daniel Cosgrove)
    Synthesizing Microbial Expansins with Unusual Activities
    Expansin proteins from diverse microbes have potential uses in deconstructing lignocellulosic biomass for conversion to renewable biofuels, nanocellulosic fibers, and commodity biochemicals.

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    High oleic pennycress. (Courtesy of Ratan Chopra)
    Pennycress – A Solution for Global Food Security, Renewable Energy and Ecosystem Benefits
    Pennycress (Thlaspi arvense) is under development as a winter annual oilseed bioenergy crop. It could produce up to 3 billion gallons of seed oil annually while reducing soil erosion and fertilizer runoff.

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    Artistic interpretation of CheckV assessing virus genome sequences from environmental samples. (Rendered by Zosia Rostomian​, Berkeley Lab)
    An Automated Tool for Assessing Virus Data Quality
    CheckV can be broadly utilized by the research community to gauge virus data quality and will help researchers to follow best practices and guidelines for providing the minimum amount of information for an uncultivated virus genome.

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    Unicellular algae in the Chlorella genus, magnified 1300x. (Andrei Savitsky)
    A One-Stop Shop for Analyzing Algal Genomes
    The PhycoCosm data portal is an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental data.

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    Artistic interpretation of how microbial genome sequences from the GEM catalog can help fill in gaps of knowledge about the microbes that play key roles in the Earth's microbiomes. (Rendered by Zosia Rostomian​, Berkeley Lab)
    Podcast: A Primer on Genome Mining
    In Natural Prodcast: the basics of genome mining, and how JGI researchers conducted it in IMG/ABC on thousands of metagenome-derived genomes for a Nature Biotechnology paper.

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    Scanning electron micrographs of diverse diatoms. (Credits: Diana Sarno, Marina Montresor, Nicole Poulsen, Gerhard Dieckmann)
    Learn About the Approved 2021 Large-Scale CSP Proposals
    A total of 27 proposals have been approved through JGI's annual Community Science Program (CSP) call. For the first time, 63 percent of the accepted proposals come from researchers who have not previously been a principal investigator on an approved JGI proposal.

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    MiddleGaylor Michael Beman UC Merced
    How to Successfully Apply for a CSP Proposal
    Reach out to JGI staff for feedback before submitting a proposal. Be sure to describe in detail what you will do with the data.

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    Click on the image or go here to watch the video "Enriching target populations for genomic analyses using HCR-FISH" from the journal Microbiome describing the research.
    How to Target a Microbial Needle within a Community Haystack
    Enabled by the JGI’s Emerging Technologies Opportunity Program, researchers have developed, tested and deployed a pipeline to first target cells from communities of uncultivated microbes, and then efficiently retrieve and characterize their genomes.

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    Artistic interpretation of how microbial genome sequences from the GEM catalog can help fill in gaps of knowledge about the microbes that play key roles in the Earth's microbiomes. (Rendered by Zosia Rostomian​, Berkeley Lab)
    Uncovering Novel Genomes from Earth’s Microbiomes
    A public repository of 52,515 microbial draft genomes generated from environmental samples around the world, expanding the known diversity of bacteria and archaea by 44%, is now available .

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    Green millet (Setaria viridis) plant collected in the wild. (Courtesy of the Kellogg lab)
    Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
    In Nature Biotechnology, a very high quality reference Setaria viridis genome was sequenced, and for the first time in wild populations, a gene related to seed dispersal was identified.

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    The Brachypodium distachyon-B. stacei-B. hybridum polyploid model complex. (Illustrations credits: Juan Luis Castillo)
    The More the Merrier: Making the Case for Plant Pan-genomes
    Crop breeders have harnessed polyploidy to increase fruit and flower size, and confer stress tolerance traits. Using a Brachypodium model system, researchers have sought to learn the origins, evolution and development of plant polyploids. The work recently appeared in Nature Communications.

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News & Publications
Home › News & Publications › Publications › 2020 Publications

2020 Publications

Abraham, B. S. et al. (2020) Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades. Environmental Microbiome 15(1). 10.1186/s40793-019-0352-4
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Al-Shayeb, B. et al. (2020) Clades of huge phages from across Earth's ecosystems. Nature 578(7795), 425-431. 10.1038/s41586-020-2007-4
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Alteio, L. V. et al. (2020) Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil. mSystems 5(2). 10.1128/mSystems.00768-19
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Anandharaj, M. et al. (2020) Constructing a yeast to express the largest cellulosome complex on the cell surface. Proc Natl Acad Sci U S A 117(5), 2385-2394. 10.1073/pnas.1916529117
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Arroyo-Herrera, I. et al. (2020) Draft genome of five Cupriavidus plantarum strains: agave, maize and sorghum plant-associated bacteria with resistance to metals. 3 Biotech 10(6), 242. 10.1007/s13205-020-02210-8
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Avci, B. et al. (2020) Polysaccharide niche partitioning of distinct Polaribacter clades during North Sea spring algal blooms. ISME J . 10.1038/s41396-020-0601-y
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Bahri, B. A. et al. (2020) Natural Variation in Lignin and Pectin Biosynthesis-Related Genes in Switchgrass (Panicum virgatum L.) and Association of SNP Variants with Dry Matter Traits. Bioenergy Research 13(1), 79-99. 10.1007/s12155-020-10090-2
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Baig, H. et al. (2020) Synthetic biology open language (SBOL) version 3.0.0. J Integr Bioinform . 10.1515/jib-2020-0017
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Barthel, S. et al. (2020) Enhancing Terminal Deoxynucleotidyl Transferase Activity on Substrates with 3' Terminal Structures for Enzymatic De Novo DNA Synthesis. Genes (Basel) 11(1). 10.3390/genes11010102
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Bell, T. H. et al. (2020) Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome. Microbiol Resour Announc 9(1). 10.1128/MRA.01361-19
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Beri, D. et al. (2020) Development of a thermophilic coculture for corn fiber conversion to ethanol. Nat Commun 11(1), 1937. 10.1038/s41467-020-15704-z
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Boratto, P. V. M. et al. (2020) Yaravirus: A novel 80-nm virus infecting Acanthamoeba castellanii. Proc Natl Acad Sci U S A . 10.1073/pnas.2001637117
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Borowska-Zuchowska, N. et al. (2020) The fate of 35S rRNA genes in the allotetraploid grass Brachypodium hybridum. Plant J . 10.1111/tpj.14869
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Bowman, E. K. et al. (2020) Bidirectional titration of yeast gene expression using a pooled CRISPR guide RNA approach. Proc Natl Acad Sci U S A 117(31), 18424-18430. 10.1073/pnas.2007413117
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Brenton, Z. W. et al. (2020) Species-Specific Duplication Event Associated with Elevated Levels of Nonstructural Carbohydrates in Sorghum bicolor. G3 (Bethesda) 10(5), 1511-1520. 10.1534/g3.119.400921
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Cao, M. et al. (2020) A genetic toolbox for metabolic engineering of Issatchenkia orientalis. Metab Eng 59, 87-97. 10.1016/j.ymben.2020.01.005
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Casarrubia, S. et al. (2020) Modulation of Plant and Fungal Gene Expression Upon Cd Exposure and Symbiosis in Ericoid Mycorrhizal Vaccinium myrtillus. Front Microbiol 11, 341. 10.3389/fmicb.2020.00341
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Chen, M. L. et al. (2020) Hiding in Plain Sight: The Globally Distributed Bacterial Candidate Phylum PAUC34f. Front Microbiol 11, 376. 10.3389/fmicb.2020.00376
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Chen, Z. J. et al. (2020) Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement. Nat Genet 52(5), 525-533. 10.1038/s41588-020-0614-5
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Chroumpi, T. et al. (2020) Identification of a gene encoding the last step of the L-rhamnose catabolic pathway in Aspergillus niger revealed the inducer of the pathway regulator. Microbiol Res 234, 126426. 10.1016/j.micres.2020.126426
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Cole, B. J. et al. (2020) Power in isolation: insights from single cells. Nat Rev Microbiol . 10.1038/s41579-020-0381-4
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Coleine, C. et al. (2020) Metagenomes in the Borderline Ecosystems of the Antarctic Cryptoendolithic Communities. Microbiol Resour Announc 9(10). 10.1128/MRA.01599-19
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Cooper, C. J. et al. (2020) Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation. Commun Biol 3(1), 320. 10.1038/s42003-020-1047-5
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Crits-Christoph, A. et al. (2020) Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow. ISME J 14(7), 1834-1846. 10.1038/s41396-020-0655-x
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Crouch, J. A. et al. (2020) Genome Sequence of the Chestnut Blight Fungus Cryphonectria parasitica EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen. Phytopathology , PHYTO12190478A. 10.1094/PHYTO-12-19-0478-A
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Danczak, R. E. et al. (2020) Ecological Assembly Processes Are Coordinated between Bacterial and Viral Communities in Fractured Shale Ecosystems. Msystems 5(2). 10.1128/mSystems.00098-20
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Dippel, A. B. et al. (2020) Development of Ratiometric Bioluminescent Sensors for in Vivo Detection of Bacterial Signaling. ACS Chem Biol 15(4), 904-914. 10.1021/acschembio.9b00800
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Dong, O. X. et al. (2020) Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9. Nat Commun 11(1), 1178. 10.1038/s41467-020-14981-y
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Eichorst, S. A. et al. (2020) One Complete and Seven Draft Genome Sequences of Subdivision 1 and 3 Acidobacteria Isolated from Soil. Microbiol Resour Announc 9(5). 10.1128/MRA.01087-19
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Espino-Vazquez, A. N. et al. (2020) Narnaviruses: novel players in fungal-bacterial symbioses. ISME J . 10.1038/s41396-020-0638-y
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Evans, S. W. et al. (2020) Embrace experimentation in biosecurity governance. Science 368(6487), 138-140. 10.1126/science.aba2932
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Flores-Nunez, V. M. et al. (2020) Functional Signatures of the Epiphytic Prokaryotic Microbiome of Agaves and Cacti. Front Microbiol 10, 3044. 10.3389/fmicb.2019.03044
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Flores-Tinoco, C. E. et al. (2020) Co-catabolism of arginine and succinate drives symbiotic nitrogen fixation. Mol Syst Biol 16(6), e9419. 10.15252/msb.20199419
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Gao, C. et al. (2020) Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics. Nat Commun 11(1), 34. 10.1038/s41467-019-13913-9
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Gluck-Thaler, E. et al. (2020) The architecture of metabolism maximizes biosynthetic diversity in the largest class of fungi. Mol Biol Evol . 10.1093/molbev/msaa122
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Gordon, S. P. et al. (2020) Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors. Nat Commun 11(1), 3670. 10.1038/s41467-020-17302-5
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Grettenberger, C. L. et al. (2020) A phylogenetically novel cyanobacterium most closely related to Gloeobacter. ISME J . 10.1038/s41396-020-0668-5
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Grieb, A. et al. (2020) A pipeline for targeted metagenomics of environmental bacteria. Microbiome 8(1), 21. 10.1186/s40168-020-0790-7
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Haas, K. N. et al. (2020) Reclassification of the Clostridium clostridioforme and Clostridium sphenoides clades as Enterocloster gen. nov. and Lacrimispora gen. nov., including reclassification of 15 taxa. Int J Syst Evol Microbiol 70(1), 23-34. 10.1099/ijsem.0.003698
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Haridas, S. et al. (2020) 101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens. Stud Mycol 96, 141-153. 10.1016/j.simyco.2020.01.003
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Hatmaker, E. A. et al. (2020) Methylome and Complete Genome Sequence of Parageobacillus toebii DSM 14590(T), a Thermophilic Bacterium. Microbiology Resource Announcements 9(25). 10.1128/MRA.00589-20
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Herve, V. et al. (2020) Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites. PeerJ 8, e8614. 10.7717/peerj.8614
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Hofmeyr, S. et al. (2020) Terabase-scale metagenome coassembly with MetaHipMer. Sci Rep 10(1), 10689. 10.1038/s41598-020-67416-5
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Hordt, A. et al. (2020) Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria. Front Microbiol 11, 468. 10.3389/fmicb.2020.00468
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Howard-Varona, C. et al. (2020) Phage-specific metabolic reprogramming of virocells. ISME J 14(4), 881-895. 10.1038/s41396-019-0580-z
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I. G. I. Testing Consortium et al. (2020) Blueprint for a pop-up SARS-CoV-2 testing lab. Nat Biotechnol 38(7), 791-797. 10.1038/s41587-020-0583-3
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Karunanithi, P. S. et al. (2020) The foxtail millet (Setaria italica) terpene synthase gene family. Plant J . 10.1111/tpj.14771
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Kjaerbolling, I. et al. (2020) A comparative genomics study of 23 Aspergillus species from section Flavi. Nat Commun 11(1), 1106. 10.1038/s41467-019-14051-y
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Klonowska, A. et al. (2020) Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil. BMC Genomics 21(1), 214. 10.1186/s12864-020-6623-z
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Kostlbacher, S. et al. (2020) Draft Genome Sequences of Chlamydiales Bacterium STE3 and Neochlamydia sp. Strain AcF84, Endosymbionts of Acanthamoeba spp. Microbiol Resour Announc 9(20). 10.1128/MRA.00220-20
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Koutrouli, M. et al. (2020) A Guide to Conquer the Biological Network Era Using Graph Theory. Frontiers in Bioengineering and Biotechnology 8. 10.3389/fbioe.2020.00034
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Koziaeva, V. V. et al. (2020) Biodiversity of Magnetotactic Bacteria in the Freshwater Lake Beloe Bordukovskoe, Russia. Microbiology 89(3), 348-358. 10.1134/S002626172003008x
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Laviad-Shitrit, S. et al. (2020) Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host. PeerJ 8, e8822. 10.7717/peerj.8822
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Li, K. et al. (2020) Deconvolute individual genomes from metagenome sequences through short read clustering. PeerJ 8, e8966. 10.7717/peerj.8966
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MacKinnon, K. J. M. et al. (2020) Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation. New Phytologist . 10.1111/nph.16507
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MacQueen, A. H. et al. (2020) Genetic Associations in Four Decades of Multienvironment Trials Reveal Agronomic Trait Evolution in Common Bean. Genetics 215(1), 267-284. 10.1534/genetics.120.303038
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Madin, J. S. et al. (2020) A synthesis of bacterial and archaeal phenotypic trait data. Sci Data 7(1), 170. 10.1038/s41597-020-0497-4
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Marques, Wesley Leoricy et al. (2020) Sequence-based bioprospecting of myo-inositol oxygenase (Miox) reveals new homologues that increase glucaric acid production in Saccharomyces cerevisiae. Enzyme and Microbial Technology 140, 109623. 10.1016/j.enzmictec.2020.109623
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Martiny, J. B. H. et al. (2020) The emergence of microbiome centres. Nat Microbiol 5(1), 2-3. 10.1038/s41564-019-0644-x
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Meyers, D. J. et al. (2020) Draft Genome Sequence of Yokenella regensburgei Strain WCD67, Isolated from the Boxelder Bug. Microbiol Resour Announc 9(15). 10.1128/MRA.00104-20
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Miyauchi, S. et al. (2020) Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus. DNA Res . 10.1093/dnares/dsaa011
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Nuccio, E. E. et al. (2020) Niche differentiation is spatially and temporally regulated in the rhizosphere. Isme Journal 14(4), 999-1014. 10.1038/s41396-019-0582-x
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Ortiz, Y. et al. (2020) Geology and climate influence rhizobiome composition of the phenotypically diverse tropical tree Tabebuia heterophylla. PLoS One 15(4), e0231083. 10.1371/journal.pone.0231083
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Oshlag, J. Z. et al. (2020) Anaerobic Degradation of Syringic Acid by an Adapted Strain of Rhodopseudomonas palustris. Appl Environ Microbiol 86(3). 10.1128/AEM.01888-19
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Ouyang, Y. et al. (2020) Short-Term Nitrogen Fertilization Affects Microbial Community Composition and Nitrogen Mineralization Functions in an Agricultural Soil. Appl Environ Microbiol 86(5). 10.1128/AEM.02278-19
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Paterson, A. H. et al. (2020) The Evolution of an Invasive Plant, Sorghum halepense L. ('Johnsongrass'). Front Genet 11, 317. 10.3389/fgene.2020.00317
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Paver, S. F. et al. (2020) Microbial communities of the Laurentian Great Lakes reflect connectivity and local biogeochemistry. Environ Microbiol 22(1), 433-446. 10.1111/1462-2920.14862
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Peris, D. et al. (2020) Synthetic hybrids of six yeast species. Nat Commun 11(1), 2085. 10.1038/s41467-020-15559-4
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Prasanna, A. N. et al. (2020) Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships. Syst Biol 69(1), 17-37. 10.1093/sysbio/syz029
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Probst, A. J. et al. (2020) Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria. ISME J 14(6), 1547-1560. 10.1038/s41396-020-0624-4
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Props, R. et al. (2020) Temperature and Nutrient Levels Correspond with Lineage-Specific Microdiversification in the Ubiquitous and Abundant Freshwater Genus Limnohabitans. Appl Environ Microbiol 86(10). 10.1128/AEM.00140-20
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Reji, L. et al. (2020) Depth-Differentiation and Seasonality of Planktonic Microbial Assemblages in the Monterey Bay Upwelling System. Front Microbiol 11, 1075. 10.3389/fmicb.2020.01075
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Ruprecht, C. et al. (2020) A Glycan Array-Based Assay for the Identification and Characterization of Plant Glycosyltransferases. Angew Chem Int Ed Engl . 10.1002/anie.202003105
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Sabuda, M. C. et al. (2020) A dynamic microbial sulfur cycle in a serpentinizing continental ophiolite. Environ Microbiol 22(6), 2329-2345. 10.1111/1462-2920.15006
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Saito, M. A. et al. (2020) Abundant nitrite-oxidizing metalloenzymes in the mesopelagic zone of the tropical Pacific Ocean. Nature Geoscience 13(5). 10.1038/s41561-020-0565-6
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Scarborough, M. J. et al. (2020) Medium-Chain Fatty Acid Synthesis by "Candidatus Weimeria bifida" gen. nov., sp. nov., and "Candidatus Pseudoramibacter fermentans" sp. nov.. Applied and Environmental Microbiology 86(3). 10.1128/AEM.02242-19
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Schmidt, J. E. et al. (2020) Impacts of directed evolution and soil management legacy on the maize rhizobiome. Soil Biology & Biochemistry 145. ARTN 107794 10.1016/j.soilbio.2020.107794
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Schriml, L. M. et al. (2020) COVID-19 pandemic reveals the peril of ignoring metadata standards. Sci Data 7(1), 188. 10.1038/s41597-020-0524-5
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Schulz, F. et al. (2020) Advantages and Limits of Metagenomic Assembly and Binning of a Giant Virus. mSystems 5(3). 10.1128/mSystems.00048-20
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Schulz, F. et al. (2020) Giant virus diversity and host interactions through global metagenomics. Nature 578(7795), 432-436. 10.1038/s41586-020-1957-x
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Seshadri, R. et al. (2020) A bacterial toolkit for plants. Nat Rev Microbiol 18(3), 124. 10.1038/s41579-020-0333-z
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Sheremet, A. et al. (2020) Ecological and genomic analyses of candidate phylum WPS-2 bacteria in an unvegetated soil. Environ Microbiol . 10.1111/1462-2920.15054
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Sierra-Garcia, I. N. et al. (2020) In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs. Sci Total Environ 715, 136646. 10.1016/j.scitotenv.2020.136646
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Simakov, O. et al. (2020) Deeply conserved synteny resolves early events in vertebrate evolution. Nat Ecol Evol 4(6), 820-830. 10.1038/s41559-020-1156-z
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Spasov, E. et al. (2020) High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant. ISME J 14(7), 1857-1872. 10.1038/s41396-020-0650-2
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St James, A. R. et al. (2020) Ecogenomics reveals community interactions in a long-term methanogenic bioreactor and a rapid switch to sulfate-reducing conditions. FEMS Microbiol Ecol 96(5). 10.1093/femsec/fiaa050
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Stover, E. et al. (2020) Rationale for reconsidering current regulations restricting use of hybrids in orange juice. Horticulture Research 7(1). 10.1038/s41438-020-0277-5
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Strepis, N. et al. (2020) Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species. BMC Genomics 21(1). 10.1186/s12864-019-6410-x
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Toubiana, D. et al. (2020) Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance. Sci Rep 10(1), 4489. 10.1038/s41598-020-61081-4
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Tseng, C. H. et al. (2020) Detection of S83V GyrA mutation in quinolone-resistant Shewanella algae using comparative genomics. J Microbiol Immunol Infect . 10.1016/j.jmii.2020.04.019
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van Munster, J. M. et al. (2020) Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose. Biotechnol Biofuels 13, 69. 10.1186/s13068-020-01702-2
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Walker, C. et al. (2020) Draft Genome Assemblies of Ionic Liquid-Resistant Yarrowia lipolytica PO1f and Its Superior Evolved Strain, YlCW001. Microbiol Resour Announc 9(9). 10.1128/MRA.01356-19
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Waltemath, D. et al. (2020) The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE). J Integr Bioinform . 10.1515/jib-2020-0005
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Wilken, S. E. et al. (2020) Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi. Metab Eng Commun 10, e00107. 10.1016/j.mec.2019.e00107
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Woods, D. P. et al. (2020) Mutations in the predicted DNA polymerase subunit POLD3 result in more rapid flowering of Brachypodium distachyon. New Phytol . 10.1111/nph.16546
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Wu, V. W. et al. (2020) The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus. Proc Natl Acad Sci U S A 117(11), 6003-6013. 10.1073/pnas.1915611117
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Xie, M. et al. (2020) Identification of functional single nucleotide polymorphism of Populus trichocarpa PtrEPSP-TF and determination of its transcriptional effect. Plant Direct 4(1), e00178. 10.1002/pld3.178
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Yelick, K. et al. (2020) The parallelism motifs of genomic data analysis. Philos Trans A Math Phys Eng Sci 378(2166), 20190394. 10.1098/rsta.2019.0394
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Zhang, J. et al. (2020) Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoe fedtschenkoi, a plant with crassulacean acid metabolism. Gigascience 9(3). 10.1093/gigascience/giaa018
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Zhou, R. et al. (2020) A willow sex chromosome reveals convergent evolution of complex palindromic repeats. Genome Biol 21(1), 38. 10.1186/s13059-020-1952-4
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Zhu, X. et al. (2020) Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem. Microbiome 8(1), 22. 10.1186/s40168-019-0780-9
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