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    Data yielded from RIViT-seq increased the number of sigma factor-gene pairs confirmed in Streptomyces coelicolor from 209 to 399. Here, grey arrows denote previously known regulation and red arrows are regulation identified by RIViT-seq; orange nodes mark sigma factors while gray nodes mark other genes. (Otani, H., Mouncey, N.J. Nat Commun 13, 3502 (2022). https://doi.org/10.1038/s41467-022-31191-w)
    Streamlining Regulon Identification in Bacteria
    Regulons are a group of genes that can be turned on or off by the same regulatory protein. RIViT-seq technology could speed up associating transcription factors with their target genes.

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    (PXFuel)
    Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
    In a special issue of the journal Synthetic Biology, JGI scientific users share how they’ve worked with the JGI DNA Synthesis Science Program and what they’ve discovered through their collaborations.

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    A genetic element that generates targeted mutations, called diversity-generating retroelements (DGRs), are found in viruses, as well as bacteria and archaea. Most DGRs found in viruses appear to be in their tail fibers. These tail fibers – signified in the cartoon by the blue virus’ downward pointing ‘arms’— allow the virus to attach to one cell type (red), but not the other (purple). DGRs mutate these ‘arms,’ giving the virus opportunities to switch to different prey, like the purple cell. (Courtesy of Blair Paul)
    A Natural Mechanism Can Turbocharge Viral Evolution
    A team has discovered that diversity generating retroelements (DGRs) are not only widespread, but also surprisingly active. In viruses, DGRs appear to generate diversity quickly, allowing these viruses to target new microbial prey.

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    Photograph of a stream of diatoms beneath Arctic sea ice.
    Polar Phytoplankton Need Zinc to Cope with the Cold
    As part of a long-term collaboration with the JGI Algal Program, researchers studying function and activity of phytoplankton genes in polar waters have found that these algae rely on dissolved zinc to photosynthesize.

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    This data image shows the monthly average sea surface temperature for May 2015. Between 2013 and 2016, a large mass of unusually warm ocean water--nicknamed the blob--dominated the North Pacific, indicated here by red, pink, and yellow colors signifying temperatures as much as three degrees Celsius (five degrees Fahrenheit) higher than average. Data are from the NASA Multi-scale Ultra-high Resolution Sea Surface Temperature (MUR SST) Analysis product. (Courtesy NASA Physical Oceanography Distributed Active Archive Center)
    When “The Blob” Made It Hotter Under the Water
    Researchers tracked the impact of a large-scale heatwave event in the ocean known as “The Blob” as part of an approved proposal through the Community Science Program.

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    A plantation of poplar trees. (David Gilbert)
    Genome Insider podcast: THE Bioenergy Tree
    The US Department of Energy’s favorite tree is poplar. In this episode, hear from ORNL scientists who have uncovered remarkable genetic secrets that bring us closer to making poplar an economical and sustainable source of energy and materials.

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    HPCwire Editor's Choice Award (logo crop) for Best Use of HPC in the Life Sciences
    JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
    The HPCwire Editors Choice Award for Best Use of HPC in Life Sciences went to the Berkeley Lab team comprised of JGI and ExaBiome Project team, supported by the DOE Exascale Computing Project for MetaHipMer, an end-to-end genome assembler that supports “an unprecedented assembly of environmental microbiomes.”

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    With a common set of "baseline metadata," JGI users can more easily access public data sets. (Steve Wilson)
    A User-Centered Approach to Accessing JGI Data
    Reflecting a structural shift in data access, the JGI Data Portal offers a way for users to more easily access public data sets through a common set of metadata.

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    Phytozome portal collage
    A More Intuitive Phytozome Interface
    Phytozome v13 now hosts upwards of 250 plant genomes and provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces they have come to rely on, with a more intuitive interface.

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    screencap from Amundson and Wilkins subsurface microbiome video
    Digging into Microbial Ecosystems Deep Underground
    JGI users and microbiome researchers at Colorado State University have many questions about the microbial communities deep underground, including the role viral infection may play in other natural ecosystems.

    Read more

    Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical output due to growth and viability constraints. Cell extracts provide an alternative format for chemical synthesis in the absence of cell growth by isolating the soluble components of lysed cells. By separating the production of enzymes (during growth) and the biochemical production process (in cell-free reactions), this framework enables biosynthesis of diverse chemical products at volumetric productivities greater than the source strains. (Blake Rasor)
    Boosting Small Molecule Production in Super “Soup”
    Researchers supported through the Emerging Technologies Opportunity Program describe a two-pronged approach that starts with engineered yeast cells but then moves out of the cell structure into a cell-free system.

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    These bright green spots are fluorescently labelled bacteria from soil collected from the surface of plant roots. For reference, the scale bar at bottom right is 10 micrometers long. (Rhona Stuart)
    A Powerful Technique to Study Microbes, Now Easier
    In JGI's Genome Insider podcast: LLNL biologist Jennifer Pett-Ridge collaborated with JGI scientists through the Emerging Technologies Opportunity Program to semi-automate experiments that measure microbial activity in soil.

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    A view of the mangroves from which the giant bacteria were sampled in Guadeloupe. (Hugo Bret)
    Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
    Harnessing JGI and Berkeley Lab resources, researchers characterized a giant - 5,000 times bigger than most bacteria - filamentous bacterium discovered in the Caribbean mangroves.

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    In their approved proposal, Frederick Colwell of Oregon State University and colleagues are interested in the microbial communities that live on Alaska’s glacially dominated Copper River Delta. They’re looking at how the microbes in these high latitude wetlands, such as the Copper River Delta wetland pond shown here, cycle carbon. (Courtesy of Rick Colwell)
    Monitoring Inter-Organism Interactions Within Ecosystems
    Many of the proposals approved through JGI's annual Community Science Program call focus on harnessing genomics to developing sustainable resources for biofuels and bioproducts.

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    Coloring the water, the algae Phaeocystis blooms off the side of the sampling vessel, Polarstern, in the temperate region of the North Atlantic. (Katrin Schmidt)
    Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
    As warm-adapted microbes edge polewards, they’d oust resident tiny algae. It's a trend that threatens to destabilize the delicate marine food web and change the oceans as we know them.

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News & Publications
Home › News & Publications › Publications › 2020 Publications

2020 Publications

Abraham, B. S. et al. (2020) Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades. Environmental Microbiome 15(1). 10.1186/s40793-019-0352-4
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Akob, D. M. et al. (2020) Mixotrophic Iron-Oxidizing Thiomonas Isolates from an Acid Mine Drainage-Affected Creek. Appl Environ Microbiol 86(24). 10.1128/AEM.01424-20
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Al-Shayeb, B. et al. (2020) Clades of huge phages from across Earth's ecosystems. Nature 578(7795), 425-431. 10.1038/s41586-020-2007-4
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Alteio, L. V. et al. (2020) Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil. mSystems 5(2). 10.1128/mSystems.00768-19
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Anandharaj, M. et al. (2020) Constructing a yeast to express the largest cellulosome complex on the cell surface. Proc Natl Acad Sci U S A 117(5), 2385-2394. 10.1073/pnas.1916529117
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Arroyo-Herrera, I. et al. (2020) Draft genome of five Cupriavidus plantarum strains: agave, maize and sorghum plant-associated bacteria with resistance to metals. 3 Biotech 10(6), 242. 10.1007/s13205-020-02210-8
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Avci, B. et al. (2020) Polysaccharide niche partitioning of distinct Polaribacter clades during North Sea spring algal blooms. ISME J . 10.1038/s41396-020-0601-y
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Bahri, B. A. et al. (2020) Natural Variation in Lignin and Pectin Biosynthesis-Related Genes in Switchgrass (Panicum virgatum L.) and Association of SNP Variants with Dry Matter Traits. Bioenergy Research 13(1), 79-99. 10.1007/s12155-020-10090-2
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Baig, H. et al. (2020) Synthetic biology open language (SBOL) version 3.0.0. J Integr Bioinform . 10.1515/jib-2020-0017
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Banerjee, D. et al. (2020) Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale. Nature Communications 11(1). 10.1038/s41467-020-19171-4
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Barthel, S. et al. (2020) Enhancing Terminal Deoxynucleotidyl Transferase Activity on Substrates with 3' Terminal Structures for Enzymatic De Novo DNA Synthesis. Genes (Basel) 11(1). 10.3390/genes11010102
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Bayer, B. et al. (2020) Metabolic versatility of the nitrite-oxidizing bacterium Nitrospira marina and its proteomic response to oxygen-limited conditions. ISME J . 10.1038/s41396-020-00828-3
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Beier, S. et al. (2020) The environment drives microbial trait variability in aquatic habitats. Mol Ecol 29(23), 4605-4617. 10.1111/mec.15656
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Bell, T. H. et al. (2020) Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome. Microbiol Resour Announc 9(1). 10.1128/MRA.01361-19
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Beri, D. et al. (2020) Development of a thermophilic coculture for corn fiber conversion to ethanol. Nat Commun 11(1), 1937. 10.1038/s41467-020-15704-z
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Boratto, P. V. M. et al. (2020) Yaravirus: A novel 80-nm virus infecting Acanthamoeba castellanii. Proc Natl Acad Sci U S A . 10.1073/pnas.2001637117
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Borowska-Zuchowska, N. et al. (2020) The fate of 35S rRNA genes in the allotetraploid grass Brachypodium hybridum. Plant J . 10.1111/tpj.14869
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Bowman, E. K. et al. (2020) Bidirectional titration of yeast gene expression using a pooled CRISPR guide RNA approach. Proc Natl Acad Sci U S A 117(31), 18424-18430. 10.1073/pnas.2007413117
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Brenton, Z. W. et al. (2020) Species-Specific Duplication Event Associated with Elevated Levels of Nonstructural Carbohydrates in Sorghum bicolor. G3 (Bethesda) 10(5), 1511-1520. 10.1534/g3.119.400921
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Cao, M. et al. (2020) A genetic toolbox for metabolic engineering of Issatchenkia orientalis. Metab Eng 59, 87-97. 10.1016/j.ymben.2020.01.005
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Casarrubia, S. et al. (2020) Modulation of Plant and Fungal Gene Expression Upon Cd Exposure and Symbiosis in Ericoid Mycorrhizal Vaccinium myrtillus. Front Microbiol 11, 341. 10.3389/fmicb.2020.00341
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Chen, M. L. et al. (2020) Hiding in Plain Sight: The Globally Distributed Bacterial Candidate Phylum PAUC34f. Front Microbiol 11, 376. 10.3389/fmicb.2020.00376
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Chen, Z. J. et al. (2020) Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement. Nat Genet 52(5), 525-533. 10.1038/s41588-020-0614-5
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Chroumpi, T. et al. (2020) Identification of a gene encoding the last step of the L-rhamnose catabolic pathway in Aspergillus niger revealed the inducer of the pathway regulator. Microbiol Res 234, 126426. 10.1016/j.micres.2020.126426
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Chuckran, P. F. et al. (2020) Metagenomes and Metatranscriptomes of a Glucose-Amended Agricultural Soil. Microbiol Resour Announc 9(44). 10.1128/MRA.00895-20
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Cole, B. J. et al. (2020) Power in isolation: insights from single cells. Nat Rev Microbiol . 10.1038/s41579-020-0381-4
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Coleine, C. et al. (2020) Metagenomes in the Borderline Ecosystems of the Antarctic Cryptoendolithic Communities. Microbiol Resour Announc 9(10). 10.1128/MRA.01599-19
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Cooper, C. J. et al. (2020) Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation. Commun Biol 3(1), 320. 10.1038/s42003-020-1047-5
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Crits-Christoph, A. et al. (2020) Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow. ISME J 14(7), 1834-1846. 10.1038/s41396-020-0655-x
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Crouch, J. A. et al. (2020) Genome Sequence of the Chestnut Blight Fungus Cryphonectria parasitica EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen. Phytopathology , PHYTO12190478A. 10.1094/PHYTO-12-19-0478-A
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Danczak, R. E. et al. (2020) Ecological Assembly Processes Are Coordinated between Bacterial and Viral Communities in Fractured Shale Ecosystems. Msystems 5(2). 10.1128/mSystems.00098-20
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Ding, Y. et al. (2020) Genetic elucidation of interconnected antibiotic pathways mediating maize innate immunity. Nat Plants 6(11), 1375-1388. 10.1038/s41477-020-00787-9
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Dippel, A. B. et al. (2020) Development of Ratiometric Bioluminescent Sensors for in Vivo Detection of Bacterial Signaling. ACS Chem Biol 15(4), 904-914. 10.1021/acschembio.9b00800
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Dong, O. X. et al. (2020) Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9. Nat Commun 11(1), 1178. 10.1038/s41467-020-14981-y
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Eichorst, S. A. et al. (2020) One Complete and Seven Draft Genome Sequences of Subdivision 1 and 3 Acidobacteria Isolated from Soil. Microbiol Resour Announc 9(5). 10.1128/MRA.01087-19
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Espino-Vazquez, A. N. et al. (2020) Narnaviruses: novel players in fungal-bacterial symbioses. ISME J . 10.1038/s41396-020-0638-y
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Evans, S. W. et al. (2020) Embrace experimentation in biosecurity governance. Science 368(6487), 138-140. 10.1126/science.aba2932
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Fernandez-Bayo, J. D. et al. (2020) Characterization of digestate microbial community structure following thermophilic anaerobic digestion with varying levels of green and food wastes. J Ind Microbiol Biotechnol 47(12), 1031-1044. 10.1007/s10295-020-02326-z
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Flores-Nunez, V. M. et al. (2020) Functional Signatures of the Epiphytic Prokaryotic Microbiome of Agaves and Cacti. Front Microbiol 10, 3044. 10.3389/fmicb.2019.03044
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Flores-Tinoco, C. E. et al. (2020) Co-catabolism of arginine and succinate drives symbiotic nitrogen fixation. Mol Syst Biol 16(6), e9419. 10.15252/msb.20199419
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Gao, C. et al. (2020) Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics. Nat Commun 11(1), 34. 10.1038/s41467-019-13913-9
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Gazitua, M. C. et al. (2020) Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters. ISME J . 10.1038/s41396-020-00825-6
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Gluck-Thaler, E. et al. (2020) The architecture of metabolism maximizes biosynthetic diversity in the largest class of fungi. Mol Biol Evol . 10.1093/molbev/msaa122
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Gluck-Thaler, E. et al. (2020) The Architecture of Metabolism Maximizes Biosynthetic Diversity in the Largest Class of Fungi. Mol Biol Evol 37(10), 2838-2856. 10.1093/molbev/msaa122
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Gordon, S. P. et al. (2020) Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors. Nat Commun 11(1), 3670. 10.1038/s41467-020-17302-5
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Grettenberger, C. L. et al. (2020) A phylogenetically novel cyanobacterium most closely related to Gloeobacter. ISME J . 10.1038/s41396-020-0668-5
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Grieb, A. et al. (2020) A pipeline for targeted metagenomics of environmental bacteria. Microbiome 8(1), 21. 10.1186/s40168-020-0790-7
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Haas, K. N. et al. (2020) Reclassification of the Clostridium clostridioforme and Clostridium sphenoides clades as Enterocloster gen. nov. and Lacrimispora gen. nov., including reclassification of 15 taxa. Int J Syst Evol Microbiol 70(1), 23-34. 10.1099/ijsem.0.003698
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Haridas, S. et al. (2020) 101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens. Stud Mycol 96, 141-153. 10.1016/j.simyco.2020.01.003
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Hatmaker, E. A. et al. (2020) Methylome and Complete Genome Sequence of Parageobacillus toebii DSM 14590(T), a Thermophilic Bacterium. Microbiology Resource Announcements 9(25). 10.1128/MRA.00589-20
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Herve, V. et al. (2020) Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites. PeerJ 8, e8614. 10.7717/peerj.8614
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Hofmeister, B. T. et al. (2020) A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa. Genome Biol 21(1), 259. 10.1186/s13059-020-02162-5
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Hofmeyr, S. et al. (2020) Terabase-scale metagenome coassembly with MetaHipMer. Sci Rep 10(1), 10689. 10.1038/s41598-020-67416-5
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Hordt, A. et al. (2020) Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria. Front Microbiol 11, 468. 10.3389/fmicb.2020.00468
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Howard-Varona, C. et al. (2020) Phage-specific metabolic reprogramming of virocells. ISME J 14(4), 881-895. 10.1038/s41396-019-0580-z
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Hufsky, F. et al. (2020) The International Virus Bioinformatics Meeting 2020. Viruses 12(12). 10.3390/v12121398
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I. G. I. Testing Consortium et al. (2020) Blueprint for a pop-up SARS-CoV-2 testing lab. Nat Biotechnol 38(7), 791-797. 10.1038/s41587-020-0583-3
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Karim, A. S. et al. (2020) Modular cell-free expression plasmids to accelerate biological design in cells. Synth Biol (Oxf) 5(1), ysaa019. 10.1093/synbio/ysaa019
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Karunanithi, P. S. et al. (2020) The foxtail millet (Setaria italica) terpene synthase gene family. Plant J . 10.1111/tpj.14771
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Kjaerbolling, I. et al. (2020) A comparative genomics study of 23 Aspergillus species from section Flavi. Nat Commun 11(1), 1106. 10.1038/s41467-019-14051-y
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Kleiner, M. et al. (2020) Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities. Microbiome 8(1). 10.1186/s40168-020-00935-5
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Klonowska, A. et al. (2020) Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil. BMC Genomics 21(1), 214. 10.1186/s12864-020-6623-z
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Kloosterman, A. M. et al. (2020) Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lantibiotics. PLoS Biol 18(12), e3001026. 10.1371/journal.pbio.3001026
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Kostlbacher, S. et al. (2020) Draft Genome Sequences of Chlamydiales Bacterium STE3 and Neochlamydia sp. Strain AcF84, Endosymbionts of Acanthamoeba spp. Microbiol Resour Announc 9(20). 10.1128/MRA.00220-20
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Koutrouli, M. et al. (2020) A Guide to Conquer the Biological Network Era Using Graph Theory. Frontiers in Bioengineering and Biotechnology 8. 10.3389/fbioe.2020.00034
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Koziaeva, V. V. et al. (2020) Biodiversity of Magnetotactic Bacteria in the Freshwater Lake Beloe Bordukovskoe, Russia. Microbiology 89(3), 348-358. 10.1134/S002626172003008x
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Kroeger, M. E. et al. (2020) Rainforest-to-pasture conversion stimulates soil methanogenesis across the Brazilian Amazon. ISME J . 10.1038/s41396-020-00804-x
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Kruger, A. et al. (2020) Development of a clostridia-based cell-free system for prototyping genetic parts and metabolic pathways. Metab Eng 62, 95-105. 10.1016/j.ymben.2020.06.004
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Laviad-Shitrit, S. et al. (2020) Draft genome of Rosenbergiella nectarea strain 8N4(T) provides insights into the potential role of this species in its plant host. PeerJ 8, e8822. 10.7717/peerj.8822
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Lee, K. S. et al. (2020) Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions. Nat Protoc . 10.1038/s41596-020-00427-8
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Li, K. et al. (2020) Deconvolute individual genomes from metagenome sequences through short read clustering. PeerJ 8, e8966. 10.7717/peerj.8966
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Li, Z. et al. (2020) Single-parent expression drives dynamic gene expression complementation in maize hybrids. Plant J . 10.1111/tpj.15042
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Liu, H. et al. (2020) Bacterial genome editing by coupling Cre-lox and CRISPR-Cas9 systems. PLoS One 15(11), e0241867. 10.1371/journal.pone.0241867
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Lofgren, L. A. et al. (2020) Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi. New Phytol . 10.1111/nph.17160
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MacKinnon, K. J. M. et al. (2020) Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation. New Phytologist . 10.1111/nph.16507
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MacQueen, A. H. et al. (2020) Genetic Associations in Four Decades of Multienvironment Trials Reveal Agronomic Trait Evolution in Common Bean. Genetics 215(1), 267-284. 10.1534/genetics.120.303038
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Madhaiyan, M. et al. (2020) Sphingomonas palmae sp. nov. and Sphingomonas gellani sp. nov., endophytically associated phyllosphere bacteria isolated from economically important crop plants. Antonie Van Leeuwenhoek 113(11), 1617-1632. 10.1007/s10482-020-01468-5
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Madin, J. S. et al. (2020) A synthesis of bacterial and archaeal phenotypic trait data. Sci Data 7(1), 170. 10.1038/s41597-020-0497-4
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Mak, W. S. et al. (2020) Discovery, Design, and Structural Characterization of Alkane-Producing Enzymes across the Ferritin-like Superfamily. Biochemistry 59(40), 3834-3843. 10.1021/acs.biochem.0c00665
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Mamidi, S. et al. (2020) A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci. Nat Biotechnol 38(10), 1203-1210. 10.1038/s41587-020-0681-2
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Marques-Galvez, J. E. et al. (2020) Desert truffle genomes reveal their reproductive modes and new insights into plant-fungal interaction and ectendomycorrhizal lifestyle. New Phytol . 10.1111/nph.17044
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Marques, W. L. et al. (2020) Sequence-based bioprospecting of myo-inositol oxygenase (Miox) reveals new homologues that increase glucaric acid production in Saccharomyces cerevisiae. Enzyme Microb Technol 140, 109623. 10.1016/j.enzmictec.2020.109623
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Marques, Wesley Leoricy et al. (2020) Sequence-based bioprospecting of myo-inositol oxygenase (Miox) reveals new homologues that increase glucaric acid production in Saccharomyces cerevisiae. Enzyme and Microbial Technology 140, 109623. 10.1016/j.enzmictec.2020.109623
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Martiny, J. B. H. et al. (2020) The emergence of microbiome centres. Nat Microbiol 5(1), 2-3. 10.1038/s41564-019-0644-x
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Mazzoli, R. et al. (2020) Construction of lactic acid overproducing Clostridium thermocellum through enhancement of lactate dehydrogenase expression. Enzyme Microb Technol 141. 10.1016/j.enzmictec.2020.109645
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Mei, R. et al. (2020) Metagenomic and Metatranscriptomic Analyses Revealed Uncultured Bacteroidales Populations as the Dominant Proteolytic Amino Acid Degraders in Anaerobic Digesters. Front Microbiol 11. 10.3389/fmicb.2020.593006
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Metcalfe, K. S. et al. (2020) Experimentally-validated correlation analysis reveals new anaerobic methane oxidation partnerships with consortium-level heterogeneity in diazotrophy. ISME J . 10.1038/s41396-020-00757-1
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Meyers, D. J. et al. (2020) Draft Genome Sequence of Yokenella regensburgei Strain WCD67, Isolated from the Boxelder Bug. Microbiol Resour Announc 9(15). 10.1128/MRA.00104-20
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Mitros, T. et al. (2020) Genome biology of the paleotetraploid perennial biomass crop Miscanthus. Nature Communications 11(1). 10.1038/s41467-020-18923-6
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Miyauchi, S. et al. (2020) Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. Nature Communications 11(1). 10.1038/s41467-020-18795-w
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Miyauchi, S. et al. (2020) Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus. DNA Res . 10.1093/dnares/dsaa011
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Mobilian, C. et al. (2020) Differential effects of press vs. pulse seawater intrusion on microbial communities of a tidal freshwater marsh. Limnology and Oceanography Letters . 10.1002/lol2.10171
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Morrow, M. A. et al. (2020) Draft Genome Sequence of a Terrestrial Planctomycete, Singulisphaera sp. Strain GP187, Isolated from Forest Soil. Microbiol Resour Announc 9(50). 10.1128/MRA.00956-20
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Mushinski, R. M. et al. (2020) Nitrogen cycling microbiomes are structured by plant mycorrhizal associations with consequences for nitrogen oxide fluxes in forests. Glob Chang Biol . 10.1111/gcb.15439
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Nayfach, S. et al. (2020) A genomic catalog of Earth's microbiomes. Nat Biotechnol . 10.1038/s41587-020-0718-6
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Nayfach, S. et al. (2020) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nat Biotechnol . 10.1038/s41587-020-00774-7
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Neches, R. Y. et al. (2020) Recombination should not be an afterthought. Nat Rev Microbiol 18(11), 606. 10.1038/s41579-020-00451-1
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