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… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … genomes claimed (or about one per student) Seven student-drafted articles accepted with over 20 more in draft Efforts …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI …

… mining and the directions it might take in the future. I highly recommend it. I’ll link to it in the show notes. … it worked pretty well. DAN UDWARY: No, they were very high quality. Yeah, for sure. NADINE ZIEMERT: Yeah, Dan… it’s a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …

… coverage of variants depends on project Fungal Minimal Draft Lower coverage short-read whole genome shotgun … using long-read sequencing. Exact library types and quality of finished product depend on genome. Selected … ( IMG ) 280/298 Microbial Improved Draft, Isolate High quality draft assembly of long-read sequence data, …

… and bioeconomy applications. The program provides high-quality, large-scale genomic data to advance microbial … of the microbial product catalog : Beyond minimal draft and improved draft microbial genomes the program …

… protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting step for many projects at … collection and storage (from PacBio) Best practices for High Molecular Weight DNA extraction and quality control … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …

Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological … lowering costs. Staff process samples, perform quality checks, and prep libraries for sequencing. They … The team works hand in hand with the Project Management Office to help ensure the JGI’s genomic capabilities are …

UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … but in subtle ways that affect fitness. And so, doing a high level kind of analysis, you just might not be able to …

… scientific discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE … such factors as genome size, polymorphism level, sample quality and availability, etc.   During scientific peer … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …