(2019) Bosea psychrotolerans sp. nov., a psychrotrophic alphaproteobacterium isolated from Lake Michigan water.
Int J Syst Evol Microbiol 69(5), 1376-1383.
10.1099/ijsem.0.003319
More Details
(2019) High-density linkage map reveals QTL underlying growth traits in AP13xVS16 biparental population of switchgrass.
Global Change Biology Bioenergy 11(5), 672-690.
10.1111/gcbb.12592
More Details
(2019) Comparative genomics reveals unique wood-decay strategies and fruiting body development in the Schizophyllaceae.
New Phytol .
10.1111/nph.16032
More Details
(2019) Comparative genomics reveals unique wood-decay strategies and fruiting body development in the Schizophyllaceae.
New Phytol .
10.1111/nph.16032
More Details
(2019) Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants.
BMC Biol 17(1), 88.
10.1186/s12915-019-0702-0
More Details
(2019) Broad-specificity GH131 beta-glucanases are a hallmark of Fungi and Oomycetes that colonise plants.
Environ Microbiol .
10.1111/1462-2920.14596
More Details
(2019) The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata.
BMC Genomics 20(1), 605.
10.1186/s12864-019-5629-x
More Details
(2019) Systematic Screening of Synthetic Gene-Encoded Enzymes for Synthesis of Modified Glycosides.
ACS Catalysis 9(4), 3219-3227.
10.1021/acscatal.8b05179
More Details
(2019) Genome-informed Bradyrhizobium taxonomy: where to from here?.
Syst Appl Microbiol .
10.1016/j.syapm.2019.03.006
More Details
(2019) Hidden diversity in the oomycete genus Olpidiopsis is a potential hazard to red algal cultivation and conservation worldwide.
European Journal of Phycology , 1-10.
10.1080/09670262.2019.1664769
More Details
(2019) Fungal ecological strategies reflected in gene transcription - a case study of two litter decomposers.
Environ Microbiol .
10.1111/1462-2920.14873
More Details
(2019) An ectomycorrhizal fungus alters sensitivity to jasmonate, salicylate, gibberellin, and ethylene in host roots.
Plant Cell Environ .
10.1111/pce.13702
More Details
(2019) Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass.
Biotechnol Biofuels 12, 81.
10.1186/s13068-019-1422-y
More Details
(2019) Enzymatic Adaptation of Podospora anserina to Different Plant Biomass Provides Leads to Optimized Commercial Enzyme Cocktails.
Biotechnol J 14(4), e1800185.
10.1002/biot.201800185
More Details
(2019) Draft Genome Sequence of the Ectomycorrhizal Ascomycete Sphaerosporella brunnea.
Microbiol Resour Announc 8(50).
10.1128/MRA.00857-19
More Details
(2019) Diversity and Distribution of Sulfur Oxidation-Related Genes in Thioalkalivibrio, a Genus of Chemolithoautotrophic and Haloalkaliphilic Sulfur-Oxidizing Bacteria.
Front Microbiol 10, 160.
10.3389/fmicb.2019.00160
More Details
(2019) Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens.
Proc Natl Acad Sci U S A 116(11), 5037-5044.
10.1073/pnas.1815631116
More Details
(2019) Awakening the Sleeping Carboxylase Function of Enzymes: Engineering the Natural CO2-Binding Potential of Reductases.
J Am Chem Soc 141(25), 9778-9782.
10.1021/jacs.9b03431
More Details
(2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea.
Nat Genet 51(5), 877-884.
10.1038/s41588-019-0405-z
More Details
(2019) Diversity of cytosine methylation across the fungal tree of life.
Nat Ecol Evol 3(3), 479-490.
10.1038/s41559-019-0810-9
More Details
(2019) Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea.
Nat Microbiol 4(4), 603-613.
10.1038/s41564-019-0363-3
More Details
(2019) Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi.
ISME J .
10.1038/s41396-018-0343-2
More Details
(2019) A New Method to Correct for Habitat Filtering in Microbial Correlation Networks.
Frontiers in Microbiology 10.
10.3389/fmicb.2019.00585
More Details
(2019) Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil.
Sci Rep 9(1), 15611.
10.1038/s41598-019-52148-y
More Details
(2019) Experimental evolution of extreme resistance to ionizing radiation in Escherichia coli after 50 cycles of selection.
J Bacteriol .
10.1128/JB.00784-18
More Details
(2019) Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium.
Microbiol Resour Announc 8(14).
10.1128/MRA.01701-18
More Details
(2019) Draft Genome Sequence of Mn(II)-Oxidizing Bacterium Oxalobacteraceae sp. Strain AB_14.
Microbiol Resour Announc 8(43).
10.1128/MRA.01024-19
More Details
(2019) Yeasts and how they came to be.
Nat Rev Microbiol .
10.1038/s41579-019-0274-6
More Details
(2019) Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot.
Sci Data 6(1), 140.
10.1038/s41597-019-0141-3
More Details
(2019) An analysis of codon bias in six red yeast species.
Yeast 36(1), 53-64.
10.1002/yea.3359
More Details
(2019) Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere.
ISME J 13(6), 1457-1468.
10.1038/s41396-019-0352-9
More Details
(2019) Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens.
Microbiol Resour Announc 8(18).
10.1128/MRA.00264-19
More Details
(2019) Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source.
Microbiol Resour Announc 8(18).
10.1128/MRA.00409-19
More Details
(2019) Agrobacterium-Mediated Transformation of Brachypodium distachyon.
Curr Protoc Plant Biol , e20088.
10.1002/cppb.20088
More Details
(2019) Agrobacterium-Mediated Transformation of Brachypodium distachyon.
Curr Protoc Plant Biol , e20088.
10.1002/cppb.20088
More Details
(2019) IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.
Nucleic Acids Res 47(D1), D666-D677.
10.1093/nar/gky901
More Details
(2019) Taxonomic and Metabolic Incongruence in the Ancient Genus Streptomyces.
Front Microbiol 10, 2170.
10.3389/fmicb.2019.02170
More Details
(2019) Multitrait genome-wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits.
New Phytol 223(1), 293-309.
10.1111/nph.15777
More Details
(2019) PMR5, an acetylation protein at the intersection of pectin biosynthesis and defense against fungal pathogens.
Plant J .
10.1111/tpj.14497
More Details
(2019) PMR5, an acetylation protein at the intersection of pectin biosynthesis and defense against fungal pathogens.
Plant J 100(5), 1022-1035.
10.1111/tpj.14497
More Details
(2019) Horizontal transfer of a pathway for coumarate catabolism unexpectedly inhibits purine nucleotide biosynthesis.
Mol Microbiol 112(6), 1784-1797.
10.1111/mmi.14393
More Details
(2019) A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism.
BMC Genomics 20(1), 420.
10.1186/s12864-019-5734-x
More Details
(2019) Probing the active fraction of soil microbiomes using BONCAT-FACS.
Nat Commun 10(1), 2770.
10.1038/s41467-019-10542-0
More Details
(2019) Variation and inheritance of small RNAs in maize inbreds and F1 hybrids.
Plant Physiol .
10.1104/pp.19.00817
More Details
(2019) Characterization of the Clostridium thermocellum AdhE, NfnAB, ferredoxin and Pfor proteins for their ability to support high titer ethanol production in Thermoanaerobacterium saccharolyticum.
Metab Eng 51, 32-42.
10.1016/j.ymben.2018.09.006
More Details
(2019) Wetland Sediments Host Diverse Microbial Taxa Capable of Cycling Alcohols.
Appl Environ Microbiol 85(12).
10.1128/AEM.00189-19
More Details
(2019) Glucose-mediated repression of plant biomass utilization in the white-rot fungus Dichomitus squalens.
Appl Environ Microbiol .
10.1128/AEM.01828-19
More Details
(2019) Mixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalens.
J Biotechnol .
10.1016/j.jbiotec.2019.11.014
More Details
(2019) Viruses control dominant bacteria colonizing the terrestrial deep biosphere after hydraulic fracturing.
Nat Microbiol 4(2), 352-361.
10.1038/s41564-018-0312-6
More Details
(2019) Metatranscriptomic Analyses of Diel Metabolic Functions During a Microcystis Bloom in Western Lake Erie (United States).
Frontiers in Microbiology 10.
10.3389/fmicb.2019.02081
More Details
(2019) Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi).
Mol Phylogenet Evol 133, 152-163.
10.1016/j.ympev.2019.01.006
More Details
(2019) "Interrogating the grainyhead-like 2 (Grhl2) genomic locus identifies an enhancer element that regulates palatogenesis in mouse".
Dev Biol .
10.1016/j.ydbio.2019.11.015
More Details
(2019) Mediterranean grassland soil C-N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms.
Nat Microbiol .
10.1038/s41564-019-0449-y
More Details
(2019) Multiple genes recruited from hormone pathways partition maize diterpenoid defences.
Nature Plants 5(10), 1043-1056.
10.1038/s41477-019-0509-6
More Details
(2019) Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere.
ISME J .
10.1038/s41396-019-0557-y
More Details
(2019) Cell-free biosynthesis of limonene using enzyme-enriched Escherichia coli lysates.
Synth Biol (Oxf) 4(1), ysz003.
10.1093/synbio/ysz003
More Details
(2019) Direct pathway cloning of the sodorifen biosynthetic gene cluster and recombinant generation of its product in E. coli.
Microb Cell Fact 18(1), 32.
10.1186/s12934-019-1080-6
More Details
(2019) A global survey of arsenic-related genes in soil microbiomes.
BMC Biol 17(1), 45.
10.1186/s12915-019-0661-5
More Details
(2019) Genome gazing in ammonia-oxidizing archaea.
Nat Rev Microbiol 17(9), 531.
10.1038/s41579-019-0248-8
More Details
(2019) Towards a genome-based virus taxonomy.
Nat Microbiol 4(8), 1249-1250.
10.1038/s41564-019-0511-9
More Details
(2019) MAGI: A Method for Metabolite Annotation and Gene Integration.
ACS Chem Biol 14(4), 704-714.
10.1021/acschembio.8b01107
More Details
(2019) Expression of Phosphofructokinase Is Not Sufficient to Enable Embden-Meyerhof-Parnas Glycolysis in Zymomonas mobilis ZM4.
Front Microbiol 10, 2270.
10.3389/fmicb.2019.02270
More Details
(2019) The initial soil microbiota impacts the potential for lignocellulose degradation during soil solarization.
J Appl Microbiol 126(6), 1729-1741.
10.1111/jam.14258
More Details
(2019) PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens.
Plant J .
10.1111/tpj.14607
More Details
(2019) Site-Selective C-H Halogenation Using Flavin-Dependent Halogenases Identified via Family-Wide Activity Profiling.
ACS Cent Sci 5(11), 1844-1856.
10.1021/acscentsci.9b00835
More Details
(2019) Flexizyme-Enabled Benchtop Biosynthesis of Thiopeptides.
J Am Chem Soc 141(2), 758-762.
10.1021/jacs.8b11521
More Details
(2019) Candidatus Prosiliicoccus vernus, a spring phytoplankton bloom associated member of the Flavobacteriaceae.
Syst Appl Microbiol 42(1), 41-53.
10.1016/j.syapm.2018.08.007
More Details
(2019) Insights into an unusual Auxiliary Activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases.
J Biol Chem .
10.1074/jbc.RA119.009223
More Details
(2019) Insights into an unusual Auxiliary Activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases.
J Biol Chem 294(45), 17117-17130.
10.1074/jbc.RA119.009223
More Details
(2019) Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence.
Front Plant Sci 10, 1249.
10.3389/fpls.2019.01249
More Details
(2019) Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.
Front Microbiol 10, 2083.
10.3389/fmicb.2019.02083
More Details
(2019) Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.
Front Microbiol 10, 2083.
10.3389/fmicb.2019.02083
More Details
(2019) Extent and Origins of Functional Diversity in a Subfamily of Glycoside Hydrolases.
J Mol Biol 431(6), 1217-1233.
10.1016/j.jmb.2019.01.024
More Details
(2019) PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution.
BMC Genomics 20(1), 580.
10.1186/s12864-019-5828-5
More Details
(2019) Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops.
Nat Commun 10(1), 4135.
10.1038/s41467-019-11974-4
More Details
(2019) Phyllosticta citricarpa and sister species of global importance to Citrus.
Mol Plant Pathol .
10.1111/mpp.12861
More Details
(2019) Phyllosticta citricarpa and sister species of global importance to Citrus.
Mol Plant Pathol 20(12), 1619-1635.
10.1111/mpp.12861
More Details
(2019) Unexpected host dependency of Antarctic Nanohaloarchaeota.
Proc Natl Acad Sci U S A .
10.1073/pnas.1905179116
More Details
(2019) Metabotyping as a Stopover in Genome-to-Phenome Mapping.
Sci Rep 9(1), 1858.
10.1038/s41598-019-38483-0
More Details
(2019) Interactions between plants and soil shaping the root microbiome under abiotic stress.
Biochem J 476(19), 2705-2724.
10.1042/BCJ20180615
More Details
(2019) Long-Term Transcriptional Activity at Zero Growth of a Cosmopolitan Rare Biosphere Member.
MBio 10(1).
10.1128/mBio.02189-18
More Details
(2019) Extracellular Electron Transfer May Be an Overlooked Contribution to Pelagic Respiration in Humic-Rich Freshwater Lakes.
mSphere 4(1).
10.1128/mSphere.00436-18
More Details
(2019) Global ecotypes in the ubiquitous marine clade SAR86.
ISME J .
10.1038/s41396-019-0516-7
More Details
(2019) Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.
Sci Data 6(1), 207.
10.1038/s41597-019-0222-3
More Details
(2019) Rare earth element alcohol dehydrogenases widely occur among globally distributed, numerically abundant and environmentally important microbes.
ISME J .
10.1038/s41396-019-0414-z
More Details
(2019) A Standardized Synthetic Eucalyptus Transcription Factor and Promoter Panel for Re-engineering Secondary Cell Wall Regulation in Biomass and Bioenergy Crops.
ACS Synth Biol 8(2), 463-465.
10.1021/acssynbio.8b00440
More Details
(2019) High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals.
Extremophiles 23(4), 399-405.
10.1007/s00792-019-01092-w
More Details
(2019) Genome sequence of the model rice variety KitaakeX.
BMC Genomics 20(1), 905.
10.1186/s12864-019-6262-4
More Details
(2019) Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks.
Nature Biotechnology 37(6), 632-+.
10.1038/s41587-019-0100-8
More Details
(2019) Whole-Genome Sequencing Identifies a Rice Grain Shape Mutant, gs9-1.
Rice 12.
10.1186/s12284-019-0308-8
More Details
(2019) Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium.
FEMS Microbiol Ecol .
10.1093/femsec/fiz186
More Details
(2019) MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies.
Peerj 7.
10.7717/peerj.7359
More Details
(2019) A Comparison of Microbial Genome Web Portals.
Front Microbiol 10, 208.
10.3389/fmicb.2019.00208
More Details
(2019) Terpene Synthases as Metabolic Gatekeepers in the Evolution of Plant Terpenoid Chemical Diversity.
Front Plant Sci 10, 1166.
10.3389/fpls.2019.01166
More Details
(2019) Multi-chassis engineering for heterologous production of microbial natural products.
Curr Opin Biotechnol 62, 88-97.
10.1016/j.copbio.2019.09.005
More Details
(2019) Pathway and Gene Discovery from Natural Hosts and Organisms.
Methods Mol Biol 1927, 1-9.
10.1007/978-1-4939-9142-6_1
More Details
(2019) Deforestation impacts network co-occurrence patterns of microbial communities in Amazon soils.
FEMS Microbiol Ecol 95(2).
10.1093/femsec/fiy230
More Details
(2019) The Genetic Architecture of Shoot and Root Trait Divergence Between Mesic and Xeric Ecotypes of a Perennial Grass.
Front Plant Sci 10, 366.
10.3389/fpls.2019.00366
More Details
(2019) Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network.
BMC Genomics 20(1), 853.
10.1186/s12864-019-6235-7
More Details
(2019) Systems Metabolic Engineering of Escherichia coli Improves Coconversion of Lignocellulose-Derived Sugars.
Biotechnol J 14(9), e1800441.
10.1002/biot.201800441
More Details
(2019) The White-Rot Basidiomycete Dichomitus squalens Shows Highly Specific Transcriptional Response to Lignocellulose-Related Aromatic Compounds.
Front Bioeng Biotechnol 7, 229.
10.3389/fbioe.2019.00229
More Details
(2019) Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi.
Proc Natl Acad Sci U S A .
10.1073/pnas.1817822116
More Details
(2019) In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes.
ISME J .
10.1038/s41396-019-0476-y
More Details
(2019) In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes.
ISME J 13(11), 2800-2816.
10.1038/s41396-019-0476-y
More Details
(2019) Evolution and comparative genomics of the most common Trichoderma species.
BMC Genomics 20(1), 485.
10.1186/s12864-019-5680-7
More Details
(2019) Mediation of plant-mycorrhizal interaction by a lectin receptor-like kinase.
Nat Plants 5(7), 676-680.
10.1038/s41477-019-0469-x
More Details
(2019) Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology.
Trends Microbiol .
10.1016/j.tim.2019.03.003
More Details
(2019) Sulfur metabolites that facilitate oceanic phytoplankton-bacteria carbon flux.
ISME J .
10.1038/s41396-019-0455-3
More Details
(2019) Complete Genome Sequence of Agrobacterium sp. Strain 33MFTa1.1, Isolated from Thlaspi arvense Roots.
Microbiol Resour Announc 8(37).
10.1128/MRA.00432-19
More Details
(2019) De novo Nanopore read quality improvement using deep learning.
BMC Bioinformatics 20(1), 552.
10.1186/s12859-019-3103-z
More Details
(2019) Genome mapping of quantitative trait loci (QTL) controlling domestication traits of intermediate wheatgrass (Thinopyrum intermedium).
Theor Appl Genet .
10.1007/s00122-019-03357-6
More Details
(2019) Comparative Biochemical and Structural Analysis of Novel Cellulose Binding Proteins (Tapirins) from Extremely Thermophilic Caldicellulosiruptor Species.
Appl Environ Microbiol 85(3).
10.1128/AEM.01983-18
More Details
(2019) Marine Synechococcus isolates representing globally abundant genomic lineages demonstrate a unique evolutionary path of genome reduction without a decrease in GC content.
Environ Microbiol 21(5), 1677-1686.
10.1111/1462-2920.14552
More Details
(2019) Genomic characterization of carbapenem-resistant Shewanella algae isolated from Asian hard clam (Meretrix lusoria).
Aquaculture 500, 300-304.
10.1016/j.aquaculture.2018.10.028
More Details
(2019) Insight into the Bacterial Endophytic Communities of Peach Cultivars Related to Crown Gall Disease Resistance.
Appl Environ Microbiol .
10.1128/AEM.02931-18
More Details
(2019) Fungal Endophytes of Populus trichocarpa Alter Host Phenotype, Gene Expression, and Rhizobiome Composition.
Mol Plant Microbe Interact 32(7), 853-864.
10.1094/MPMI-05-18-0133-R
More Details
(2019) Time-series metatranscriptomes reveal conserved patterns between phototrophic and heterotrophic microbes in diverse freshwater systems.
Limnology and Oceanography .
10.1002/lno.11306
More Details
(2019) The genome of cowpea (Vigna unguiculata [L.] Walp.).
Plant J 98(5), 767-782.
10.1111/tpj.14349
More Details
(2019) QTL x environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient.
Proc Natl Acad Sci U S A 116(26), 12933-12941.
10.1073/pnas.1821543116
More Details
(2019) Cinnamic Acid and Sorbic acid Conversion Are Mediated by the Same Transcriptional Regulator in Aspergillus niger.
Front Bioeng Biotechnol 7, 249.
10.3389/fbioe.2019.00249
More Details
(2019) Organic sulfur fingerprint indicates continued injection fluid signature 10 months after hydraulic fracturing.
Environ Sci Process Impacts 21(2), 206-213.
10.1039/c8em00331a
More Details
(2019) Comparative Genomics and Transcriptomics to Analyze Fruiting Body Development in Filamentous Ascomycetes.
Genetics .
10.1534/genetics.119.302749
More Details
(2019) Synthetic Biology Open Language (SBOL) Version 2.3.
J Integr Bioinform .
10.1515/jib-2019-0025
More Details
(2019) Advancing Genome-Resolved Metagenomics beyond the Shotgun.
mSystems 4(3).
10.1128/mSystems.00118-19
More Details
(2019) Structural dynamics and transcriptomic analysis of Dehalococcoides mccartyi within a TCE-Dechlorinating community in a completely mixed flow reactor.
Water Res 158, 146-156.
10.1016/j.watres.2019.04.038
More Details
(2019) Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary.
Biotechniques .
10.2144/btn-2018-0192
More Details
(2019) Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov.
Syst Appl Microbiol 42(1), 54-66.
10.1016/j.syapm.2018.12.003
More Details
(2019) The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes.
BMC Genomics 20(1), 119.
10.1186/s12864-019-5485-8
More Details
(2019) Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria.
Nat Commun 10(1), 463.
10.1038/s41467-018-08246-y
More Details
(2019) Genome-wide association analysis of stalk biomass and anatomical traits in maize.
BMC Plant Biol 19(1), 45.
10.1186/s12870-019-1653-x
More Details
(2019) mSphere of Influence: the View from the Microbiologists of the Future.
mSphere 4(3).
10.1128/mSphere.00348-19
More Details
(2019) A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis.
Dev Biol 452(1), 8-20.
10.1016/j.ydbio.2019.03.015
More Details
(2019) Numerous cultivated and uncultivated viruses encode ribosomal proteins.
Nat Commun 10(1), 752.
10.1038/s41467-019-08672-6
More Details
(2019) Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery.
Biotechnol Biofuels 12, 229.
10.1186/s13068-019-1569-6
More Details
(2019) Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina.
New Phytol .
10.1111/nph.15687
More Details
(2019) New voyages to explore the natural product galaxy.
J Ind Microbiol Biotechnol 46(3-4), 273-279.
10.1007/s10295-018-02122-w
More Details
(2019) Biosynthesis and Emission of Stress-Induced Volatile Terpenes in Roots and Leaves of Switchgrass (Panicum virgatum L.).
Front Plant Sci 10, 1144.
10.3389/fpls.2019.01144
More Details
(2019) Genomes OnLine database (GOLD) v.7: updates and new features.
Nucleic Acids Res 47(D1), D649-D659.
10.1093/nar/gky977
More Details
(2019) A Customizable Approach for the Enzymatic Production and Purification of Diterpenoid Natural Products.
J Vis Exp (152).
10.3791/59992
More Details
(2019) Enhancing microRNA167A expression in seed decreases the alpha-linolenic acid content and increases seed size in Camelina sativa.
Plant J .
10.1111/tpj.14223
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(2019) Uncovering the Diversity and Activity of Methylotrophic Methanogens in Freshwater Wetland Soils.
mSystems 4(6).
10.1128/mSystems.00320-19
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(2019) Early Diverging Fungus Mucor circinelloides Lacks Centromeric Histone CENP-A and Displays a Mosaic of Point and Regional Centromeres.
Curr Biol 29(22), 3791-3802 e6.
10.1016/j.cub.2019.09.024
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(2019) Novel insights from uncultivated genomes of the global human gut microbiome.
Nature .
10.1038/s41586-019-1058-x
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(2019) A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators.
Proc Natl Acad Sci U S A .
10.1073/pnas.1907517116
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(2019) ManiNetCluster: a novel manifold learning approach to reveal the functional links between gene networks.
BMC Genomics 20(Suppl 12), 1003.
10.1186/s12864-019-6329-2
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(2019) Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae.
Viruses 11(4).
10.3390/v11040351
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(2019) A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides.
Microb Cell Fact 18(1), 117.
10.1186/s12934-019-1167-0
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(2019) Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom.
Sci Data 6(1), 129.
10.1038/s41597-019-0132-4
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(2019) Lessons from Two Design-Build-Test-Learn Cycles of Dodecanol Production in Escherichia coli Aided by Machine Learning.
ACS Synth Biol 8(6), 1337-1351.
10.1021/acssynbio.9b00020
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(2019) Niche differentiation among annually recurrent coastal Marine Group II Euryarchaeota.
ISME J 13(12), 3024-3036.
10.1038/s41396-019-0491-z
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(2019) Trichoderma harzianum transcriptome in response to cadmium exposure.
Fungal Genet Biol 134, 103281.
10.1016/j.fgb.2019.103281
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(2019) Tracking of enzymatic biomass deconstruction by fungal secretomes highlights markers of lignocellulose recalcitrance.
Biotechnol Biofuels 12, 76.
10.1186/s13068-019-1417-8
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(2019) IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes.
Nucleic Acids Res 47(D1), D678-D686.
10.1093/nar/gky1127
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(2019) Diversity, evolution, and classification of virophages uncovered through global metagenomics.
Microbiome 7(1), 157.
10.1186/s40168-019-0768-5
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(2019) IMG-ABC v.5.0: an update to the IMG/Atlas of Biosynthetic Gene Clusters Knowledgebase.
Nucleic Acids Res .
10.1093/nar/gkz932
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(2019) Comparative Genomics of Rumen Butyrivibrio spp. Uncovers a Continuum of Polysaccharide-Degrading Capabilities.
Appl Environ Microbiol 86(1).
10.1128/AEM.01993-19
More Details
(2019) Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication.
BMC Evol Biol 19(1), 77.
10.1186/s12862-019-1398-z
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(2019) Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613.
Appl Microbiol Biotechnol 103(19), 8145-8155.
10.1007/s00253-019-10089-6
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(2019) Diterpene Synthase-Catalyzed Biosynthesis of Distinct Clerodane Stereoisomers.
Chembiochem 20(1), 111-117.
10.1002/cbic.201800580
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(2019) Inorganic nitrogen availability alters Eucalyptus grandis receptivity to the ectomycorrhizal fungus Pisolithus albus but not symbiotic nitrogen transfer.
New Phytol .
10.1111/nph.16322
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(2019) Oxidative Pathways of Deoxyribose and Deoxyribonate Catabolism.
mSystems 4(1).
10.1128/mSystems.00297-18
More Details
(2019) High Density Genetic Maps of Seashore Paspalum Using Genotyping-By-Sequencing and Their Relationship to The Sorghum Bicolor Genome.
Sci Rep 9(1), 12183.
10.1038/s41598-019-48257-3
More Details
(2019) Extensions of BLUP Models for Genomic Prediction in Heterogeneous Populations: Application in a Diverse Switchgrass Sample.
G3 (Bethesda) 9(3), 789-805.
10.1534/g3.118.200969
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(2019) Gene regulatory networks for lignin biosynthesis in switchgrass (Panicum virgatum).
Plant Biotechnol J 17(3), 580-593.
10.1111/pbi.13000
More Details
(2019) Depth distributions of nitrite reductase (nirK) gene variants reveal spatial dynamics of thaumarchaeal ecotype populations in coastal Monterey Bay.
Environ Microbiol .
10.1111/1462-2920.14753
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(2019) Phylogenomics suggests oxygen availability as a driving force in Thaumarchaeota evolution.
ISME J .
10.1038/s41396-019-0418-8
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(2019) Diverse members of the Xylariales lack canonical mating-type regions.
Fungal Genet Biol 122, 47-52.
10.1016/j.fgb.2018.12.004
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(2019) Novel copper-containing membrane monooxygenases (CuMMOs) encoded by alkane-utilizing Betaproteobacteria.
ISME J .
10.1038/s41396-019-0561-2
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(2019) Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources.
Curr Microbiol .
10.1007/s00284-019-01657-0
More Details
(2019) Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes.
Nat Microbiol 4(11), 1895-1906.
10.1038/s41564-019-0510-x
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(2019) A Viral Ecogenomics Framework To Uncover the Secrets of Nature's "Microbe Whisperers".
mSystems 4(3).
10.1128/mSystems.00111-19
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(2019) Optimizing de novo genome assembly from PCR-amplified metagenomes.
PeerJ 7, e6902.
10.7717/peerj.6902
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(2019) Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes.
Nat Microbiol .
10.1038/s41564-019-0510-x
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(2019) Four Draft Single-Cell Genome Sequences of Novel, Nearly Identical Kiritimatiellaeota Strains Isolated from the Continental Deep Subsurface.
Microbiol Resour Announc 8(11).
10.1128/MRA.01249-18
More Details
(2019) Improved Draft Genome Sequence of Microbacterium sp. Strain LKL04, a Bacterial Endophyte Associated with Switchgrass Plants.
Microbiol Resour Announc 8(45).
10.1128/MRA.00927-19
More Details
(2019) Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes.
Cell 178(5), 1245-1259 e14.
10.1016/j.cell.2019.07.016
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(2019) Marine Proteobacteria metabolize glycolate via the beta-hydroxyaspartate cycle.
Nature 575(7783), 500-504.
10.1038/s41586-019-1748-4
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(2019) Validating genome-wide CRISPR-Cas9 function improves screening in the oleaginous yeast Yarrowia lipolytica.
Metab Eng 55, 102-110.
10.1016/j.ymben.2019.06.007
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(2019) Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies.
Sci Data 6(1), 285.
10.1038/s41597-019-0287-z
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(2019) Metabolomics of sorghum roots during nitrogen stress reveals compromised metabolic capacity for salicylic acid biosynthesis.
Plant Direct 3(3), e00122.
10.1002/pld3.122
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(2019) Computational Strategies for Scalable Genomics Analysis.
Genes (Basel) 10(12).
10.3390/genes10121017
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(2019) SpaRC: scalable sequence clustering using Apache Spark.
Bioinformatics 35(5), 760-768.
10.1093/bioinformatics/bty733
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(2019) High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types.
Cell Rep 27(7), 2241-2247 e4.
10.1016/j.celrep.2019.04.054
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(2019) Engineered root bacteria release plant-available phosphate from phytate.
Appl Environ Microbiol .
10.1128/AEM.01210-19
More Details
(2019) Unusual Metabolism and Hypervariation in the Genome of a Gracilibacterium (BD1-5) from an Oil-Degrading Community.
MBio 10(6).
10.1128/mBio.02128-19
More Details
(2019) Conservation of Endophyte Bacterial Community Structure Across Two Panicum Grass Species.
Front Microbiol 10, 2181.
10.3389/fmicb.2019.02181
More Details
(2019) Genomic Signatures for Sedimentary Microbial Utilization of Phytoplankton Detritus in a Fast-Flowing Estuary.
Front Microbiol 10, 2475.
10.3389/fmicb.2019.02475
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(2019) Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop.
Gigascience 8(12).
10.1093/gigascience/giz129
More Details
(2019) Sulfate-Reducing Bacteria That Produce Exopolymers Thrive in the Calcifying Zone of a Hypersaline Cyanobacterial Mat.
Front Microbiol 10, 862.
10.3389/fmicb.2019.00862
More Details
(2019) Deep-sea hydrothermal vent metagenome-assembled genomes provide insight into the phylum Nanoarchaeota.
Environ Microbiol Rep 11(2), 262-270.
10.1111/1758-2229.12740
More Details
(2019) Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil.
Proc Natl Acad Sci U S A 116(51), 25900-25908.
10.1073/pnas.1908291116
More Details
(2019) Four amino acids define the CO2 binding pocket of enoyl-CoA carboxylases/reductases.
Proc Natl Acad Sci U S A .
10.1073/pnas.1901471116
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(2019) Multi-omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring.
Environ Microbiol .
10.1111/1462-2920.14741
More Details
(2019) Control of Bacterial Sulfite Detoxification by Conserved and Species-Specific Regulatory Circuits.
Front Microbiol 10, 960.
10.3389/fmicb.2019.00960
More Details
(2019) Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures.
Front Microbiol 10, 1427.
10.3389/fmicb.2019.01427
More Details
(2019) A mutation in the AdhE alcohol dehydrogenase of Clostridium thermocellum increases tolerance to several primary alcohols, including isobutanol, n-butanol and ethanol.
Scientific Reports 9.
10.1038/s41598-018-37979-5
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(2019) Metabolic engineering of Clostridium thermocellum for n-butanol production from cellulose.
Biotechnol Biofuels 12, 186.
10.1186/s13068-019-1524-6
More Details
(2019) Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils.
PeerJ 7, e7265.
10.7717/peerj.7265
More Details
(2019) Molecular Mechanisms Driving Switch Behavior in Xylem Cell Differentiation.
Cell Rep 28(2), 342-351 e4.
10.1016/j.celrep.2019.06.041
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(2019) A single-cell genome perspective on studying intracellular associations in unicellular eukaryotes.
Philos Trans R Soc Lond B Biol Sci 374(1786), 20190082.
10.1098/rstb.2019.0082
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(2019) Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California.
PLoS One 14(2), e0212355.
10.1371/journal.pone.0212355
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(2019) Salicylic acid activates poplar defense against the biotrophic rust fungus Melampsora larici-populina via increased biosynthesis of catechin and proanthocyanidins.
New Phytol 221(2), 960-975.
10.1111/nph.15396
More Details
(2019) Construction and comparison of three reference-quality genome assemblies for soybean.
Plant J 100(5), 1066-1082.
10.1111/tpj.14500
More Details
(2019) Construction and comparison of three reference-quality genome assemblies for soybean.
Plant J .
10.1111/tpj.14500
More Details
(2019) Characteristics of Wetting-Induced Bacteriophage Blooms in Biological Soil Crust.
mBio 10(6).
10.1128/mBio.02287-19
More Details
(2019) Megaphylogeny resolves global patterns of mushroom evolution.
Nat Ecol Evol .
10.1038/s41559-019-0834-1
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(2019) Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses.
Proc Natl Acad Sci U S A .
10.1073/pnas.1907500116
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(2019) Chemical synthesis rewriting of a bacterial genome to achieve design flexibility and biological functionality.
Proc Natl Acad Sci U S A 116(16), 8070-8079.
10.1073/pnas.1818259116
More Details
(2019) At the nexus of three kingdoms: the genome of the mycorrhizal fungus Gigaspora margarita provides insights into plant, endobacterial and fungal interactions.
Environ Microbiol .
10.1111/1462-2920.14827
More Details
(2019) Contrasting Pathways for Anaerobic Methane Oxidation in Gulf of Mexico Cold Seep Sediments.
mSystems 4(1).
10.1128/mSystems.00091-18
More Details
(2019) Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons.
ISME J 13(12), 3067-3079.
10.1038/s41396-019-0493-x
More Details
(2019) Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta.
Genome Biol 20(1), 126.
10.1186/s13059-019-1729-9
More Details
(2019) CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria.
Nat Microbiol .
10.1038/s41564-019-0573-8
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(2019) SoyCSN: Soybean context-specific network analysis and prediction based on tissue-specific transcriptome data.
Plant Direct 3(9), e00167.
10.1002/pld3.167
More Details
(2019) Rational Reprogramming of O-Methylation Regioselectivity for Combinatorial Biosynthetic Tailoring of Benzenediol Lactone Scaffolds.
J Am Chem Soc 141(10), 4355-4364.
10.1021/jacs.8b12967
More Details
(2019) Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation.
Front Genet 10, 487.
10.3389/fgene.2019.00487
More Details
(2019) Genome analysis of the marine bacterium Kiloniella laminariae and first insights into comparative genomics with related Kiloniella species.
Arch Microbiol .
10.1007/s00203-019-01791-0
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(2019) Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate.
Genetics 211(1), 317-331.
10.1534/genetics.118.301589
More Details
(2019) Beyond the census of human gut dwellers.
Nat Rev Microbiol 17(7), 401.
10.1038/s41579-019-0220-7
More Details
(2019) A Functional Mini-Integrase in a Two-Protein-type V-C CRISPR System.
Mol Cell 73(4), 727-737 e3.
10.1016/j.molcel.2018.12.015
More Details
(2019) Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi.
ISME J .
10.1038/s41396-019-0359-2
More Details
(2019) Novel assembly strategy cracks open the mysteries of walnut genome evolution.
Hortic Res 6, 57.
10.1038/s41438-019-0143-5
More Details
(2019) Reversal of carbapenem-resistance in Shewanella algae by CRISPR/Cas9 genome editing.
J Adv Res 18, 61-69.
10.1016/j.jare.2019.01.011
More Details
(2019) Improved Draft Genome Sequence of Pseudomonas poae A2-S9, a Strain with Plant Growth-Promoting Activity.
Microbiol Resour Announc 8(15).
10.1128/MRA.00275-19
More Details
(2019) Genomic Characterization of Candidate Division LCP-89 Reveals an Atypical Cell Wall Structure, Microcompartment Production, and Dual Respiratory and Fermentative Capacities.
Appl Environ Microbiol 85(10).
10.1128/AEM.00110-19
More Details
(2019) The transcription factor ACE3 controls cellulase activities and lactose metabolism via two additional regulators in the fungus Trichoderma reesei.
J Biol Chem 294(48), 18435-18450.
10.1074/jbc.RA119.008497
More Details
(2019) Overexpression of a Prefoldin beta subunit gene reduces biomass recalcitrance in the bioenergy crop Populus.
Plant Biotechnol J .
10.1111/pbi.13254
More Details
(2019) Division of labor in honey bee gut microbiota for plant polysaccharide digestion.
Proc Natl Acad Sci U S A 116(51), 25909-25916.
10.1073/pnas.1916224116
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