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    Screencap of green algae video for PNAS paper
    Green Algae Reveal One mRNA Encodes Many Proteins
    A team of researchers has found numerous examples of polycistronic expression – in which two or more genes are encoded on a single molecule of mRNA – in two species of green algae.

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    Advances in Rapidly Engineering Non-model Bacteria
    CRAGE is a technique for chassis (or strain)-independent recombinase-assisted genome engineering, allowing scientists to conduct genome-wide screens and explore biosynthetic pathways. Now, CRAGE is being applied to other synthetic biology problems.

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    Maize can produce a cocktail of antibiotics with a handful of enzymes. (Sam Fentress, CC BY-SA 2.0)
    How Maize Makes An Antibiotic Cocktail
    Zealexins are produced in every corn variety and protect maize by fending off fungal and microbial infections using surprisingly few enzymes.

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    Poplar (Populus trichocarpa and P. deltoides) grow in the Advanced Plant Phenotyping Laboratory (APPL) at Oak Ridge National Laboratory in Tennessee. Poplar is an important biofuel feedstock, and Populus trichocarpa is the first tree species to have its genome sequenced — a feat accomplished by JGI. (Image courtesy of Oak Ridge National Laboratory, U.S. Dept. of Energy)
    Podcast: Xiaohan Yang on A Plantiful Future
    Building off plant genomics collaborations between the JGI and Oak Ridge National Laboratory, Xiaohan Yang envisions customizing plants for the benefit of human society.

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    Expansin complex with cell wall in background. (Courtesy of Daniel Cosgrove)
    Synthesizing Microbial Expansins with Unusual Activities
    Expansin proteins from diverse microbes have potential uses in deconstructing lignocellulosic biomass for conversion to renewable biofuels, nanocellulosic fibers, and commodity biochemicals.

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    High oleic pennycress. (Courtesy of Ratan Chopra)
    Pennycress – A Solution for Global Food Security, Renewable Energy and Ecosystem Benefits
    Pennycress (Thlaspi arvense) is under development as a winter annual oilseed bioenergy crop. It could produce up to 3 billion gallons of seed oil annually while reducing soil erosion and fertilizer runoff.

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    Artistic interpretation of CheckV assessing virus genome sequences from environmental samples. (Rendered by Zosia Rostomian​, Berkeley Lab)
    An Automated Tool for Assessing Virus Data Quality
    CheckV can be broadly utilized by the research community to gauge virus data quality and will help researchers to follow best practices and guidelines for providing the minimum amount of information for an uncultivated virus genome.

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    Unicellular algae in the Chlorella genus, magnified 1300x. (Andrei Savitsky)
    A One-Stop Shop for Analyzing Algal Genomes
    The PhycoCosm data portal is an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental data.

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    Artistic interpretation of how microbial genome sequences from the GEM catalog can help fill in gaps of knowledge about the microbes that play key roles in the Earth's microbiomes. (Rendered by Zosia Rostomian​, Berkeley Lab)
    Podcast: A Primer on Genome Mining
    In Natural Prodcast: the basics of genome mining, and how JGI researchers conducted it in IMG/ABC on thousands of metagenome-derived genomes for a Nature Biotechnology paper.

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    Image of Octopus Springs for the CSP annual call
    Letters of Intent are due April 12, 2021 for the annual Community Science Program (CSP) call focused on large-scale genomic science projects that address specific areas of special emphasis and exploit the diversity of JGI capabilities.

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    SIP engagement webinar
    “SIP technologies at EMSL and JGI” Webinar
    The concerted stable isotope-related tools and resources of the JGI and the Environmental Molecular Sciences Laboratory (EMSL) may be requested by applying for the annual “Facilities Integrating Collaborations for User Science” (FICUS) call.

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    CSP Functional Genomics Call Ongoing
    The CSP Functional Genomics call helps users translate genomic information into biological function. Proposals submitted by July 31, 2021 will be part of the next review.

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    Aerial photo of the switchgrass diversity panel late in the 2020 season at the Kellogg Biological Station in Michigan. (Robert Goodwin)
    A Team Effort Toward Targeted Crop Improvements
    A multi-institutional team has produced a high-quality reference sequence of the complex switchgrass genome. Building off this work, researchers at three DOE Bioenergy Research Centers have expanded the network of common gardens and are exploring improvements to switchgrass.

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    Artistic interpretation of how microbial genome sequences from the GEM catalog can help fill in gaps of knowledge about the microbes that play key roles in the Earth's microbiomes. (Rendered by Zosia Rostomian​, Berkeley Lab)
    Uncovering Novel Genomes from Earth’s Microbiomes
    A public repository of 52,515 microbial draft genomes generated from environmental samples around the world, expanding the known diversity of bacteria and archaea by 44%, is now available .

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    Green millet (Setaria viridis) plant collected in the wild. (Courtesy of the Kellogg lab)
    Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
    In Nature Biotechnology, a very high quality reference Setaria viridis genome was sequenced, and for the first time in wild populations, a gene related to seed dispersal was identified.

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News & Publications
Home › News & Publications › Publications › 2019 Publications

2019 Publications

Albert, R. A. et al. (2019) Bosea psychrotolerans sp. nov., a psychrotrophic alphaproteobacterium isolated from Lake Michigan water. Int J Syst Evol Microbiol 69(5), 1376-1383. 10.1099/ijsem.0.003319
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Ali, S. et al. (2019) High-density linkage map reveals QTL underlying growth traits in AP13xVS16 biparental population of switchgrass. Global Change Biology Bioenergy 11(5), 672-690. 10.1111/gcbb.12592
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Almasi, E. et al. (2019) Comparative genomics reveals unique wood-decay strategies and fruiting body development in the Schizophyllaceae. New Phytol . 10.1111/nph.16032
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Almasi, E. et al. (2019) Comparative genomics reveals unique wood-decay strategies and fruiting body development in the Schizophyllaceae. New Phytol . 10.1111/nph.16032
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Alvarez-Escribano, I. et al. (2019) Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants. BMC Biol 17(1), 88. 10.1186/s12915-019-0702-0
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Anasontzis, G. E. et al. (2019) Broad-specificity GH131 beta-glucanases are a hallmark of Fungi and Oomycetes that colonise plants. Environ Microbiol . 10.1111/1462-2920.14596
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Armaleo, D. et al. (2019) The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata. BMC Genomics 20(1), 605. 10.1186/s12864-019-5629-x
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Armstrong, Zachary et al. (2019) Systematic Screening of Synthetic Gene-Encoded Enzymes for Synthesis of Modified Glycosides. ACS Catalysis 9(4), 3219-3227. 10.1021/acscatal.8b05179
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Avontuur, J. R. et al. (2019) Genome-informed Bradyrhizobium taxonomy: where to from here?. Syst Appl Microbiol . 10.1016/j.syapm.2019.03.006
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Badis, Yacine et al. (2019) Hidden diversity in the oomycete genus Olpidiopsis is a potential hazard to red algal cultivation and conservation worldwide. European Journal of Phycology , 1-10. 10.1080/09670262.2019.1664769
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Barbi, F. et al. (2019) Fungal ecological strategies reflected in gene transcription - a case study of two litter decomposers. Environ Microbiol . 10.1111/1462-2920.14873
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Basso, V. et al. (2019) An ectomycorrhizal fungus alters sensitivity to jasmonate, salicylate, gibberellin, and ethylene in host roots. Plant Cell Environ . 10.1111/pce.13702
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Benocci, T. et al. (2019) Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass. Biotechnol Biofuels 12, 81. 10.1186/s13068-019-1422-y
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Benocci, T. et al. (2019) Enzymatic Adaptation of Podospora anserina to Different Plant Biomass Provides Leads to Optimized Commercial Enzyme Cocktails. Biotechnol J 14(4), e1800185. 10.1002/biot.201800185
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Benucci, G. M. N. et al. (2019) Draft Genome Sequence of the Ectomycorrhizal Ascomycete Sphaerosporella brunnea. Microbiol Resour Announc 8(50). 10.1128/MRA.00857-19
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Berben, T. et al. (2019) Diversity and Distribution of Sulfur Oxidation-Related Genes in Thioalkalivibrio, a Genus of Chemolithoautotrophic and Haloalkaliphilic Sulfur-Oxidizing Bacteria. Front Microbiol 10, 160. 10.3389/fmicb.2019.00160
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Berghuis, B. A. et al. (2019) Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens. Proc Natl Acad Sci U S A 116(11), 5037-5044. 10.1073/pnas.1815631116
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Bernhardsgrutter, I. et al. (2019) Awakening the Sleeping Carboxylase Function of Enzymes: Engineering the Natural CO2-Binding Potential of Reductases. J Am Chem Soc 141(25), 9778-9782. 10.1021/jacs.9b03431
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Bertioli, D. J. et al. (2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nat Genet 51(5), 877-884. 10.1038/s41588-019-0405-z
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Bewick, A. J. et al. (2019) Diversity of cytosine methylation across the fungal tree of life. Nat Ecol Evol 3(3), 479-490. 10.1038/s41559-019-0810-9
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Borrel, G. et al. (2019) Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea. Nat Microbiol 4(4), 603-613. 10.1038/s41564-019-0363-3
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Boyd, J. A. et al. (2019) Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi. ISME J . 10.1038/s41396-018-0343-2
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Brisson, V. et al. (2019) A New Method to Correct for Habitat Filtering in Microbial Correlation Networks. Frontiers in Microbiology 10. 10.3389/fmicb.2019.00585
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Brisson, V. L. et al. (2019) Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil. Sci Rep 9(1), 15611. 10.1038/s41598-019-52148-y
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Bruckbauer, S. T. et al. (2019) Experimental evolution of extreme resistance to ionizing radiation in Escherichia coli after 50 cycles of selection. J Bacteriol . 10.1128/JB.00784-18
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Brzoska, R. M. et al. (2019) Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium. Microbiol Resour Announc 8(14). 10.1128/MRA.01701-18
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Bushman, T. J. et al. (2019) Draft Genome Sequence of Mn(II)-Oxidizing Bacterium Oxalobacteraceae sp. Strain AB_14. Microbiol Resour Announc 8(43). 10.1128/MRA.01024-19
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Calhoun, S. et al. (2019) Yeasts and how they came to be. Nat Rev Microbiol . 10.1038/s41579-019-0274-6
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Camargo, A. P. et al. (2019) Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot. Sci Data 6(1), 140. 10.1038/s41597-019-0141-3
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Camiolo, S. et al. (2019) An analysis of codon bias in six red yeast species. Yeast 36(1), 53-64. 10.1002/yea.3359
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Carr, S. A. et al. (2019) Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere. ISME J 13(6), 1457-1468. 10.1038/s41396-019-0352-9
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Casado Lopez, S. et al. (2019) Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens. Microbiol Resour Announc 8(18). 10.1128/MRA.00264-19
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Chaput, G. et al. (2019) Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source. Microbiol Resour Announc 8(18). 10.1128/MRA.00409-19
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Chen, F. et al. (2019) Agrobacterium-Mediated Transformation of Brachypodium distachyon. Curr Protoc Plant Biol , e20088. 10.1002/cppb.20088
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Chen, F. et al. (2019) Agrobacterium-Mediated Transformation of Brachypodium distachyon. Curr Protoc Plant Biol , e20088. 10.1002/cppb.20088
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Chen, I. A. et al. (2019) IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes. Nucleic Acids Res 47(D1), D666-D677. 10.1093/nar/gky901
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Chevrette, M. G. et al. (2019) Taxonomic and Metabolic Incongruence in the Ancient Genus Streptomyces. Front Microbiol 10, 2170. 10.3389/fmicb.2019.02170
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Chhetri, H. B. et al. (2019) Multitrait genome-wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits. New Phytol 223(1), 293-309. 10.1111/nph.15777
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Chiniquy, D. et al. (2019) PMR5, an acetylation protein at the intersection of pectin biosynthesis and defense against fungal pathogens. Plant J . 10.1111/tpj.14497
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Chiniquy, D. et al. (2019) PMR5, an acetylation protein at the intersection of pectin biosynthesis and defense against fungal pathogens. Plant J 100(5), 1022-1035. 10.1111/tpj.14497
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Close, D. M. et al. (2019) Horizontal transfer of a pathway for coumarate catabolism unexpectedly inhibits purine nucleotide biosynthesis. Mol Microbiol 112(6), 1784-1797. 10.1111/mmi.14393
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Cooper, E. A. et al. (2019) A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism. BMC Genomics 20(1), 420. 10.1186/s12864-019-5734-x
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Couradeau, E. et al. (2019) Probing the active fraction of soil microbiomes using BONCAT-FACS. Nat Commun 10(1), 2770. 10.1038/s41467-019-10542-0
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Crisp, P. A. et al. (2019) Variation and inheritance of small RNAs in maize inbreds and F1 hybrids. Plant Physiol . 10.1104/pp.19.00817
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Cui, J. et al. (2019) Characterization of the Clostridium thermocellum AdhE, NfnAB, ferredoxin and Pfor proteins for their ability to support high titer ethanol production in Thermoanaerobacterium saccharolyticum. Metab Eng 51, 32-42. 10.1016/j.ymben.2018.09.006
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Dalcin Martins, P. et al. (2019) Wetland Sediments Host Diverse Microbial Taxa Capable of Cycling Alcohols. Appl Environ Microbiol 85(12). 10.1128/AEM.00189-19
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Daly, P. et al. (2019) Glucose-mediated repression of plant biomass utilization in the white-rot fungus Dichomitus squalens. Appl Environ Microbiol . 10.1128/AEM.01828-19
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Daly, P. et al. (2019) Mixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalens. J Biotechnol . 10.1016/j.jbiotec.2019.11.014
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Daly, R. A. et al. (2019) Viruses control dominant bacteria colonizing the terrestrial deep biosphere after hydraulic fracturing. Nat Microbiol 4(2), 352-361. 10.1038/s41564-018-0312-6
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Davenport, E. J. et al. (2019) Metatranscriptomic Analyses of Diel Metabolic Functions During a Microcystis Bloom in Western Lake Erie (United States). Frontiers in Microbiology 10. 10.3389/fmicb.2019.02081
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Davis, W. J. et al. (2019) Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi). Mol Phylogenet Evol 133, 152-163. 10.1016/j.ympev.2019.01.006
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de Vries, M. et al. (2019) "Interrogating the grainyhead-like 2 (Grhl2) genomic locus identifies an enhancer element that regulates palatogenesis in mouse". Dev Biol . 10.1016/j.ydbio.2019.11.015
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Diamond, S. et al. (2019) Mediterranean grassland soil C-N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms. Nat Microbiol . 10.1038/s41564-019-0449-y
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Ding, Yezhang et al. (2019) Multiple genes recruited from hormone pathways partition maize diterpenoid defences. Nature Plants 5(10), 1043-1056. 10.1038/s41477-019-0509-6
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Doud, D. F. R. et al. (2019) Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere. ISME J . 10.1038/s41396-019-0557-y
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Dudley, Q. M. et al. (2019) Cell-free biosynthesis of limonene using enzyme-enriched Escherichia coli lysates. Synth Biol (Oxf) 4(1), ysz003. 10.1093/synbio/ysz003
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Duell, E. R. et al. (2019) Direct pathway cloning of the sodorifen biosynthetic gene cluster and recombinant generation of its product in E. coli. Microb Cell Fact 18(1), 32. 10.1186/s12934-019-1080-6
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Dunivin, T. K. et al. (2019) A global survey of arsenic-related genes in soil microbiomes. BMC Biol 17(1), 45. 10.1186/s12915-019-0661-5
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Eloe-Fadrosh, E. A. et al. (2019) Genome gazing in ammonia-oxidizing archaea. Nat Rev Microbiol 17(9), 531. 10.1038/s41579-019-0248-8
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Eloe-Fadrosh, E. A. et al. (2019) Towards a genome-based virus taxonomy. Nat Microbiol 4(8), 1249-1250. 10.1038/s41564-019-0511-9
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Erbilgin, O. et al. (2019) MAGI: A Method for Metabolite Annotation and Gene Integration. ACS Chem Biol 14(4), 704-714. 10.1021/acschembio.8b01107
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Felczak, M. M. et al. (2019) Expression of Phosphofructokinase Is Not Sufficient to Enable Embden-Meyerhof-Parnas Glycolysis in Zymomonas mobilis ZM4. Front Microbiol 10, 2270. 10.3389/fmicb.2019.02270
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Fernandez-Bayo, J. D. et al. (2019) The initial soil microbiota impacts the potential for lignocellulose degradation during soil solarization. J Appl Microbiol 126(6), 1729-1741. 10.1111/jam.14258
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Fernandez-Pozo, N. et al. (2019) PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens. Plant J . 10.1111/tpj.14607
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Fisher, B. F. et al. (2019) Site-Selective C-H Halogenation Using Flavin-Dependent Halogenases Identified via Family-Wide Activity Profiling. ACS Cent Sci 5(11), 1844-1856. 10.1021/acscentsci.9b00835
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Fleming, S. R. et al. (2019) Flexizyme-Enabled Benchtop Biosynthesis of Thiopeptides. J Am Chem Soc 141(2), 758-762. 10.1021/jacs.8b11521
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Francis, T. B. et al. (2019) Candidatus Prosiliicoccus vernus, a spring phytoplankton bloom associated member of the Flavobacteriaceae. Syst Appl Microbiol 42(1), 41-53. 10.1016/j.syapm.2018.08.007
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Frandsen, K. E. H. et al. (2019) Insights into an unusual Auxiliary Activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases. J Biol Chem . 10.1074/jbc.RA119.009223
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Frandsen, K. E. H. et al. (2019) Insights into an unusual Auxiliary Activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases. J Biol Chem 294(45), 17117-17130. 10.1074/jbc.RA119.009223
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Furches, A. et al. (2019) Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence. Front Plant Sci 10, 1249. 10.3389/fpls.2019.01249
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Garcia-Lopez, M. et al. (2019) Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes. Front Microbiol 10, 2083. 10.3389/fmicb.2019.02083
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Garcia-Lopez, M. et al. (2019) Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes. Front Microbiol 10, 2083. 10.3389/fmicb.2019.02083
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Glasgow, E. M. et al. (2019) Extent and Origins of Functional Diversity in a Subfamily of Glycoside Hydrolases. J Mol Biol 431(6), 1217-1233. 10.1016/j.jmb.2019.01.024
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Gordon, S. P. et al. (2019) PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution. BMC Genomics 20(1), 580. 10.1186/s12864-019-5828-5
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Grady, K. L. et al. (2019) Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops. Nat Commun 10(1), 4135. 10.1038/s41467-019-11974-4
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Guarnaccia, V. et al. (2019) Phyllosticta citricarpa and sister species of global importance to Citrus. Mol Plant Pathol . 10.1111/mpp.12861
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Guarnaccia, V. et al. (2019) Phyllosticta citricarpa and sister species of global importance to Citrus. Mol Plant Pathol 20(12), 1619-1635. 10.1111/mpp.12861
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Hamm, J. N. et al. (2019) Unexpected host dependency of Antarctic Nanohaloarchaeota. Proc Natl Acad Sci U S A . 10.1073/pnas.1905179116
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Handakumbura, P. P. et al. (2019) Metabotyping as a Stopover in Genome-to-Phenome Mapping. Sci Rep 9(1), 1858. 10.1038/s41598-019-38483-0
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Hartman, K. et al. (2019) Interactions between plants and soil shaping the root microbiome under abiotic stress. Biochem J 476(19), 2705-2724. 10.1042/BCJ20180615
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Hausmann, B. et al. (2019) Long-Term Transcriptional Activity at Zero Growth of a Cosmopolitan Rare Biosphere Member. MBio 10(1). 10.1128/mBio.02189-18
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He, S. et al. (2019) Extracellular Electron Transfer May Be an Overlooked Contribution to Pelagic Respiration in Humic-Rich Freshwater Lakes. mSphere 4(1). 10.1128/mSphere.00436-18
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Hoarfrost, A. et al. (2019) Global ecotypes in the ubiquitous marine clade SAR86. ISME J . 10.1038/s41396-019-0516-7
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Hogfors-Ronnholm, E. et al. (2019) Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials. Sci Data 6(1), 207. 10.1038/s41597-019-0222-3
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Huang, J. et al. (2019) Rare earth element alcohol dehydrogenases widely occur among globally distributed, numerically abundant and environmentally important microbes. ISME J . 10.1038/s41396-019-0414-z
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Hussey, S. G. et al. (2019) A Standardized Synthetic Eucalyptus Transcription Factor and Promoter Panel for Re-engineering Secondary Cell Wall Regulation in Biomass and Bioenergy Crops. ACS Synth Biol 8(2), 463-465. 10.1021/acssynbio.8b00440
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Izrael-Zivkovic, L. et al. (2019) High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals. Extremophiles 23(4), 399-405. 10.1007/s00792-019-01092-w
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Jain, R. et al. (2019) Genome sequence of the model rice variety KitaakeX. BMC Genomics 20(1), 905. 10.1186/s12864-019-6262-4
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Jang, H. B. et al. (2019) Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks. Nature Biotechnology 37(6), 632-+. 10.1038/s41587-019-0100-8
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Jiang, L. R. et al. (2019) Whole-Genome Sequencing Identifies a Rice Grain Shape Mutant, gs9-1. Rice 12. 10.1186/s12284-019-0308-8
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Jimenez, D. J. et al. (2019) Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium. FEMS Microbiol Ecol . 10.1093/femsec/fiz186
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Kang, D. W. D. et al. (2019) MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies. Peerj 7. 10.7717/peerj.7359
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Karp, P. D. et al. (2019) A Comparison of Microbial Genome Web Portals. Front Microbiol 10, 208. 10.3389/fmicb.2019.00208
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Karunanithi, P. S. et al. (2019) Terpene Synthases as Metabolic Gatekeepers in the Evolution of Plant Terpenoid Chemical Diversity. Front Plant Sci 10, 1166. 10.3389/fpls.2019.01166
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Ke, J. et al. (2019) Multi-chassis engineering for heterologous production of microbial natural products. Curr Opin Biotechnol 62, 88-97. 10.1016/j.copbio.2019.09.005
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Ke, J. et al. (2019) Pathway and Gene Discovery from Natural Hosts and Organisms. Methods Mol Biol 1927, 1-9. 10.1007/978-1-4939-9142-6_1
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Khan, M. A. W. et al. (2019) Deforestation impacts network co-occurrence patterns of microbial communities in Amazon soils. FEMS Microbiol Ecol 95(2). 10.1093/femsec/fiy230
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Khasanova, A. et al. (2019) The Genetic Architecture of Shoot and Root Trait Divergence Between Mesic and Xeric Ecotypes of a Perennial Grass. Front Plant Sci 10, 366. 10.3389/fpls.2019.00366
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Khosravi, C. et al. (2019) Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network. BMC Genomics 20(1), 853. 10.1186/s12864-019-6235-7
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Kim, J. et al. (2019) Systems Metabolic Engineering of Escherichia coli Improves Coconversion of Lignocellulose-Derived Sugars. Biotechnol J 14(9), e1800441. 10.1002/biot.201800441
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Kowalczyk, J. E. et al. (2019) The White-Rot Basidiomycete Dichomitus squalens Shows Highly Specific Transcriptional Response to Lignocellulose-Related Aromatic Compounds. Front Bioeng Biotechnol 7, 229. 10.3389/fbioe.2019.00229
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Krizsan, K. et al. (2019) Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi. Proc Natl Acad Sci U S A . 10.1073/pnas.1817822116
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