2005 Publications

Alexandrino, J. et al. (2005) Strong selection against hybrids at a hybrid zone in the Ensatina ring species complex and its evolutionary implications. Evolution 59(6), 1334-1347.
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Boore, J. L. et al. (2005) Sequencing and comparing whole mitochondrial genomes of animals. Molecular Evolution: Producing the Biochemical Data, Part B 395, 311-348. Doi 10.1016/S0076-6879(05)95019-2
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Dehal, P. et al. (2005) Two rounds of whole genome duplication in the ancestral vertebrate. Plos Biology 3(10), 1700-1708. ARTN e314 DOI 10.1371/journal.pbio.0030314
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Foster, J. et al. (2005) The Wolbachia genome of Brugia malayi: Endosymbiont evolution within a human pathogenic nematode. Plos Biology 3(4), 599-614. ARTN e121 DOI 10.1371/journal.pbio.0030121
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Francino, M. P. et al. (2005) An adaptive radiation model for the origin of new gene functions. Nature Genetics 37(6), 573-577. Doi 10.1038/Ng1579
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Gatesy, J. et al. (2005) Hidden likelihood support in genomic data: Can forty-five wrongs make a right?. Systematic Biology 54(3), 483-492. Doi 10.1080/10635150590945368
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Jansen, R. K. et al. (2005) Methods for obtaining and analyzing whole chloroplast genome sequences. Molecular Evolution: Producing the Biochemical Data, Part B 395, 348-384. Doi 10.1016/S0076-6879(05)95020-9
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Keys, D. N. et al. (2005) A saturation screen for cis-acting regulatory DNA in the Hox genes of Ciona intestinalis. Proceedings of the National Academy of Sciences of the United States of America 102(3), 679-683. Doi 10.1073/Pnas.0408952102
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Leebens-Mack, J. et al. (2005) Identifying the basal angiosperm node in chloroplast genome phylogenies: Sampling one's way out of the felsenstein zone. Molecular Biology and Evolution 22(10), 1948-1963. Doi 10.1093/Molbev/Msi191
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Macey, J. R. et al. (2005) Plethodontid salamander mitochondrial genomics: A parsimony evaluation of character conflict and implications for historical biogeography. Cladistics 21(2), 194-202. Doi 10.1111/J.1096-0031.2005.00054.X
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Macey, J. R. et al. (2005) The complete mitochondrial genome of a gecko and the phylogenetic position of the Middle Eastern Teratoscincus keyserlingii. Molecular Phylogenetics and Evolution 36(1), 188-193. Doi 10.1016/J.Ympev.2005.03.025
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Medina, M. et al. (2005) Genomes, phylogeny, and evolutionary systems biology. Proceedings of the National Academy of Sciences of the United States of America 102, 6630-6635. Doi 10.1073/Pnas.0501984102
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Medina, M. et al. (2005) Phylogeny of sea hares in the Aplysia clade based on mitochondrial DNA sequence data. Bulletin of Marine Science 76(3), 691-698.
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Mueller, R. L. et al. (2005) Molecular mechanisms of extensive mitochondrial gene rearrangement in plethodontid salamanders. Molecular Biology and Evolution 22(10), 2104-2112. Doi 10.1093/Molbev/Msi204
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Noonan, J. P. et al. (2005) Genomic sequencing of Pleistocene cave bears. Science 309(5734), 597-9. 10.1126/science.1113485
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Parham, J. F. et al. (2005) A reassessment of the referral of sea turtle skulls to the genus Osteopygis (Late Cretaceous, New Jersey, USA). Journal of Vertebrate Paleontology 25(1), 71-77. Doi 10.1671/0272-4634(2005)025[0071:Arotro]2.0.Co;2
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Place, A. R. et al. (2005) Genetic markers in blue crabs (Callinectes sapidus) II. Complete mitochondrial genome sequence and characterization of genetic variation. Journal of Experimental Marine Biology and Ecology 319(1-2), 15-27. Doi 10.1016/J.Jembe.2004.03.024
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Richards, S. et al. (2005) Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution. Genome Research 15(1), 1-18. Doi 10.1101/Gr.3059305
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Rojas, A. et al. (2005) Gata4 expression in lateral mesoderm is downstream of BMP4 and is activated directly by Forkhead and GATA transcription factors through a distal enhancer element. Development 132(15), 3405-3417. Doi 10.1242/Dev.01913
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Tringe, S. G. et al. (2005) Comparative metagenomics of microbial communities. Science 308(5721), 554-557. Doi 10.1126/Science.1107851
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Vrdoljak, G. et al. (2005) Characterization of a diesel sludge microbial consortia for bioremediation. Scanning 27(1), 8-14.
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Weng, L. et al. (2005) Lack of MEF2A mutations in coronary artery disease. Journal of Clinical Investigation 115(4), 1016-1020. Doi 10.1172/Jci24186
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Wolf, P. G. et al. (2005) The first complete chloroplast genome sequence of a lycophyte, Huperzia lucidula (Lycopodiaceae). Gene 350(2), 117-128. Doi 10.1016/J.Gene.2005.01.018
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