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Publication Policy
… The purpose of this policy is to establish communication norms around … recognized and credited for their work, while also adhering to the authorship policies of the journal in which the … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …
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Publications
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … A primary purpose of this project is to bring educators from a broad range of …
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Genetic determinants of endophytism in the Arabidopsis root mycobiome
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help … host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other … The sequencing project was funded by the U.S. Department of Energy (DOE) Joint Genome Institute, a DOE Office of …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved … develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct … This process enables our users to explore the genetic makeup of microbial communities, shedding light on …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for … ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If … the minimum is 100 kb, and for metabolomics, at least 22 samples are required. If your proposed request falls …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such … Phylogenetic diversity estimates show that the gap between … gap is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in … and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning …
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