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    Data yielded from RIViT-seq increased the number of sigma factor-gene pairs confirmed in Streptomyces coelicolor from 209 to 399. Here, grey arrows denote previously known regulation and red arrows are regulation identified by RIViT-seq; orange nodes mark sigma factors while gray nodes mark other genes. (Otani, H., Mouncey, N.J. Nat Commun 13, 3502 (2022). https://doi.org/10.1038/s41467-022-31191-w)
    Streamlining Regulon Identification in Bacteria
    Regulons are a group of genes that can be turned on or off by the same regulatory protein. RIViT-seq technology could speed up associating transcription factors with their target genes.

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    (PXFuel)
    Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
    In a special issue of the journal Synthetic Biology, JGI scientific users share how they’ve worked with the JGI DNA Synthesis Science Program and what they’ve discovered through their collaborations.

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    A genetic element that generates targeted mutations, called diversity-generating retroelements (DGRs), are found in viruses, as well as bacteria and archaea. Most DGRs found in viruses appear to be in their tail fibers. These tail fibers – signified in the cartoon by the blue virus’ downward pointing ‘arms’— allow the virus to attach to one cell type (red), but not the other (purple). DGRs mutate these ‘arms,’ giving the virus opportunities to switch to different prey, like the purple cell. (Courtesy of Blair Paul)
    A Natural Mechanism Can Turbocharge Viral Evolution
    A team has discovered that diversity generating retroelements (DGRs) are not only widespread, but also surprisingly active. In viruses, DGRs appear to generate diversity quickly, allowing these viruses to target new microbial prey.

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    Photograph of a stream of diatoms beneath Arctic sea ice.
    Polar Phytoplankton Need Zinc to Cope with the Cold
    As part of a long-term collaboration with the JGI Algal Program, researchers studying function and activity of phytoplankton genes in polar waters have found that these algae rely on dissolved zinc to photosynthesize.

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    This data image shows the monthly average sea surface temperature for May 2015. Between 2013 and 2016, a large mass of unusually warm ocean water--nicknamed the blob--dominated the North Pacific, indicated here by red, pink, and yellow colors signifying temperatures as much as three degrees Celsius (five degrees Fahrenheit) higher than average. Data are from the NASA Multi-scale Ultra-high Resolution Sea Surface Temperature (MUR SST) Analysis product. (Courtesy NASA Physical Oceanography Distributed Active Archive Center)
    When “The Blob” Made It Hotter Under the Water
    Researchers tracked the impact of a large-scale heatwave event in the ocean known as “The Blob” as part of an approved proposal through the Community Science Program.

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    A plantation of poplar trees. (David Gilbert)
    Genome Insider podcast: THE Bioenergy Tree
    The US Department of Energy’s favorite tree is poplar. In this episode, hear from ORNL scientists who have uncovered remarkable genetic secrets that bring us closer to making poplar an economical and sustainable source of energy and materials.

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    HPCwire Editor's Choice Award (logo crop) for Best Use of HPC in the Life Sciences
    JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
    The HPCwire Editors Choice Award for Best Use of HPC in Life Sciences went to the Berkeley Lab team comprised of JGI and ExaBiome Project team, supported by the DOE Exascale Computing Project for MetaHipMer, an end-to-end genome assembler that supports “an unprecedented assembly of environmental microbiomes.”

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    With a common set of "baseline metadata," JGI users can more easily access public data sets. (Steve Wilson)
    A User-Centered Approach to Accessing JGI Data
    Reflecting a structural shift in data access, the JGI Data Portal offers a way for users to more easily access public data sets through a common set of metadata.

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    Phytozome portal collage
    A More Intuitive Phytozome Interface
    Phytozome v13 now hosts upwards of 250 plant genomes and provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces they have come to rely on, with a more intuitive interface.

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    screencap from Amundson and Wilkins subsurface microbiome video
    Digging into Microbial Ecosystems Deep Underground
    JGI users and microbiome researchers at Colorado State University have many questions about the microbial communities deep underground, including the role viral infection may play in other natural ecosystems.

    Read more

    Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical output due to growth and viability constraints. Cell extracts provide an alternative format for chemical synthesis in the absence of cell growth by isolating the soluble components of lysed cells. By separating the production of enzymes (during growth) and the biochemical production process (in cell-free reactions), this framework enables biosynthesis of diverse chemical products at volumetric productivities greater than the source strains. (Blake Rasor)
    Boosting Small Molecule Production in Super “Soup”
    Researchers supported through the Emerging Technologies Opportunity Program describe a two-pronged approach that starts with engineered yeast cells but then moves out of the cell structure into a cell-free system.

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    These bright green spots are fluorescently labelled bacteria from soil collected from the surface of plant roots. For reference, the scale bar at bottom right is 10 micrometers long. (Rhona Stuart)
    A Powerful Technique to Study Microbes, Now Easier
    In JGI's Genome Insider podcast: LLNL biologist Jennifer Pett-Ridge collaborated with JGI scientists through the Emerging Technologies Opportunity Program to semi-automate experiments that measure microbial activity in soil.

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    A view of the mangroves from which the giant bacteria were sampled in Guadeloupe. (Hugo Bret)
    Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
    Harnessing JGI and Berkeley Lab resources, researchers characterized a giant - 5,000 times bigger than most bacteria - filamentous bacterium discovered in the Caribbean mangroves.

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    In their approved proposal, Frederick Colwell of Oregon State University and colleagues are interested in the microbial communities that live on Alaska’s glacially dominated Copper River Delta. They’re looking at how the microbes in these high latitude wetlands, such as the Copper River Delta wetland pond shown here, cycle carbon. (Courtesy of Rick Colwell)
    Monitoring Inter-Organism Interactions Within Ecosystems
    Many of the proposals approved through JGI's annual Community Science Program call focus on harnessing genomics to developing sustainable resources for biofuels and bioproducts.

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    Coloring the water, the algae Phaeocystis blooms off the side of the sampling vessel, Polarstern, in the temperate region of the North Atlantic. (Katrin Schmidt)
    Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
    As warm-adapted microbes edge polewards, they’d oust resident tiny algae. It's a trend that threatens to destabilize the delicate marine food web and change the oceans as we know them.

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News & Publications
Home › News & Publications › Publications › 2009 Publications

2009 Publications

Aklujkar, M. et al. (2009) The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens. BMC Microbiol 9, 109. 10.1186/1471-2180-9-109
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Allen, M. A. et al. (2009) The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation. ISME J 3(9), 1012-35. 10.1038/ismej.2009.45
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Anderson, I. et al. (2009) Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T)). Standards in Genomic Sciences 1(3), 218-225. Doi 10.4056/Sigs.31864
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Anderson, I. et al. (2009) Complete genome sequence of Halorhabdus utahensis type strain (AX-2). Stand Genomic Sci 1(3), 218-25. 10.4056/sigs.31864
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Anderson, I. et al. (2009) Genomic characterization of methanomicrobiales reveals three classes of methanogens. PLoS One 4(6), e5797. 10.1371/journal.pone.0005797
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Anderson, I. J. et al. (2009) The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota. Bmc Genomics 10. Artn 145 Doi 10.1186/1471-2164-10-145
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Anderson, I. J. et al. (2009) Complete genome sequence of Methanocorpusculum labreanum type strain Z. Stand Genomic Sci 1(2), 197-203. 10.4056/sigs.35575
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Anderson, I. J. et al. (2009) Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1. Stand Genomic Sci 1(2), 189-96. 10.4056/sigs.32535
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Anderson, I. J. et al. (2009) Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1. Stand Genomic Sci 1(2), 183-8. 10.4056/sigs.30527
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Baker, S. E. et al. (2009) Selection to sequence: opportunities in fungal genomics. Environ Microbiol 11(12), 2955-8. 10.1111/j.1462-2920.2009.02112.x
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Barabote, R. D. et al. (2009) Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations. Genome Research 19(6), 1033-1043. DOI 10.1101/gr.084848.108
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Bickel, R. D. et al. (2009) Contrasting Patterns of Sequence Evolution at the Functionally Redundant bric A brac Paralogs in Drosophila melanogaster. Journal of Molecular Evolution 69(2), 194-202. DOI 10.1007/s00239-009-9265-y
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Blazewicz, J. et al. (2009) Whole genome assembly from 454 sequencing output via modified DNA graph concept. Computational Biology and Chemistry 33(3), 224-230. DOI 10.1016/j.compbiolchem.2009.04.005
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Bressler, J. et al. (2009) The INSIG2 rs7566605 genetic variant does not play a major role in obesity in a sample of 24,722 individuals from four cohorts. BMC Med Genet 10, 56. 10.1186/1471-2350-10-56
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Calton, M. A. et al. (2009) Association of functionally significant Melanocortin-4 but not Melanocortin-3 receptor mutations with severe adult obesity in a large North American case-control study. Human Molecular Genetics 18(6), 1140-1147. Doi 10.1093/Hmg/Ddn431
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Campbell, B. J. et al. (2009) Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola. PLoS Genet 5(2), e1000362. 10.1371/journal.pgen.1000362
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Carbon, S. et al. (2009) AmiGO: online access to ontology and annotation data. Bioinformatics 25(2), 288-9. 10.1093/bioinformatics/btn615
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Chain, P. S. et al. (2009) Genomics. Genome project standards in a new era of sequencing. Science 326(5950), 236-7. 10.1126/science.1180614
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Chain, P. S. et al. (2009) Genomics. Genome project standards in a new era of sequencing. Science 326(5950), 236-7. 10.1126/science.1180614
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Chovatia, M. et al. (2009) Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883). Stand Genomic Sci 1(3), 254-61. 10.4056/sigs.40645
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Chovatia, M. et al. (2009) Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883(T)). Standards in Genomic Sciences 1(3), 254-261. Doi 10.4056/Sigs.40645
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Chun, J. et al. (2009) Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae. Proceedings of the National Academy of Sciences of the United States of America 106(36), 15442-15447. DOI 10.1073/pnas.0907787106
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Clum, A. et al. (2009) Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT). Standards in Genomic Sciences 1(1), 38-45. Doi 10.4056/Sigs.1463
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Clum, A. et al. (2009) Complete genome sequence of Pirellula staleyi type strain (ATCC 27377(T)). Standards in Genomic Sciences 1(3), 308-316. Doi 10.4056/Sigs.51657
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Coleman, J. J. et al. (2009) The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion. Plos Genetics 5(8). ARTN e1000618 DOI 10.1371/journal.pgen.1000618
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Copeland, A. et al. (2009) Complete genome sequence of Catenulispora acidiphila type strain (ID 139908(T)). Standards in Genomic Sciences 1(2), 119-125. Doi 10.4056/Sigs.17259
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Copeland, A. et al. (2009) Complete genome sequence of Desulfomicrobium baculatum type strain (X). Stand Genomic Sci 1(1), 29-37. 10.4056/sigs.13134
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Cordeddu, V. et al. (2009) Mutation of SHOC2 promotes aberrant protein N-myristoylation and causes Noonan-like syndrome with loose anagen hair. Nat Genet 41(9), 1022-6. 10.1038/ng.425
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Donaher, N. et al. (2009) The complete plastid genome sequence of the secondarily nonphotosynthetic alga Cryptomonas paramecium: reduction, compaction, and accelerated evolutionary rate. Genome Biol Evol 1, 439-48. 10.1093/gbe/evp047
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Drainas, C. et al. (2009) Characterization and whole genome sequencing of Arthrobacter phenanthrenivorans, a new phenanthrene degrading bacterium. Febs Journal 276, 101-101.
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Dubchak, I. et al. (2009) Multiple whole-genome alignments without a reference organism. Genome Research 19(4), 682-689. DOI 10.1101/gr.081778.108
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Duncan, K. E. et al. (2009) Biocorrosive thermophilic microbial communities in Alaskan North Slope oil facilities. Environ Sci Technol 43(20), 7977-84. 10.1021/es9013932
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Duncan, K. E. et al. (2009) Biocorrosive thermophilic microbial communities in Alaskan North Slope oil facilities. Environ Sci Technol 43(20), 7977-84. 10.1021/es9013932
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Engelbrektson, A. et al. (2009) Probiotics to minimize the disruption of faecal microbiota in healthy subjects undergoing antibiotic therapy. J Med Microbiol 58(Pt 5), 663-70. 10.1099/jmm.0.47615-0
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Field, D. et al. (2009) Meeting Report from the Genomic Standards Consortium (GSC) Workshops 6 and 7. Stand Genomic Sci 1(1), 68-71. 10.4056/sigs.25165
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Foster, J. T. et al. (2009) Whole-genome-based phylogeny and divergence of the genus Brucella. J Bacteriol 191(8), 2864-70. 10.1128/JB.01581-08
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Gray, J. et al. (2009) A recommendation for naming transcription factor proteins in the grasses. Plant Physiol 149(1), 4-6. 10.1104/pp.108.128504
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Han, C. et al. (2009) Complete genome sequence of Kangiella koreensis type strain (SW-125). Stand Genomic Sci 1(3), 226-33. 10.4056/sigs.36635
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Han, C. et al. (2009) Complete genome sequence of Kangiella koreensis type strain (SW-125). Stand Genomic Sci 1(3), 226-33. 10.4056/sigs.36635
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Han, C. et al. (2009) Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3). Stand Genomic Sci 1(1), 54-62. 10.4056/sigs.22138
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Harris, D. R. et al. (2009) Directed evolution of ionizing radiation resistance in Escherichia coli. J Bacteriol 191(16), 5240-52. 10.1128/JB.00502-09
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Herlemann, D. P. et al. (2009) Genomic analysis of "Elusimicrobium minutum," the first cultivated representative of the phylum "Elusimicrobia" (formerly termite group 1). Appl Environ Microbiol 75(9), 2841-9. 10.1128/AEM.02698-08
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Hill, K. K. et al. (2009) Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricum type E strains. BMC Biol 7, 66. 10.1186/1741-7007-7-66
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Hill, K. K. et al. (2009) Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricum type E strains. BMC Biol 7, 66. 10.1186/1741-7007-7-66
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Hooper, S. D. et al. (2009) Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach. Nucleic Acids Research 37(7), 2096-2104. Doi 10.1093/Nar/Gkp075
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Hooper, S. D. et al. (2009) Microbial co-habitation and lateral gene transfer: what transposases can tell us. Genome Biology 10(4). Artn R45 Doi 10.1186/Gb-2009-10-4-R45
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Hugenholtz, P. et al. (2009) Focus: Synergistetes. Environ Microbiol 11(6), 1327-9. 10.1111/j.1462-2920.2009.01949.x
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Hugenholtz, P. et al. (2009) A changing of the guard. Environ Microbiol 11(3), 551-3. 10.1111/j.1462-2920.2009.01888.x
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Ivanova, N. et al. (2009) Complete genome sequence of Leptotrichia buccalis type strain (C-1013-b(T)). Standards in Genomic Sciences 1(2), 126-132. Doi 10.4056/Sigs.1854
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Ivanova, N. et al. (2009) Complete genome sequence of Sanguibacter keddieii type strain (ST-74). Stand Genomic Sci 1(2), 110-8. 10.4056/sigs.16197
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Ivanova, N. et al. (2009) Spreading of aqueous solutions of trisiloxanes and conventional surfactants over PTFE AF coated silicone wafers. Langmuir 25(6), 3564-70. 10.1021/la803679y
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Jiang, Z. H. et al. (2009) Old can be new again: HAPPY whole genome sequencing, mapping and assembly. International Journal of Biological Sciences 5(4), 298-303.
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Kataeva, I. A. et al. (2009) Genome Sequence of the Anaerobic, Thermophilic, and Cellulolytic Bacterium "Anaerocellum thermophilum" DSM 6725. Journal of Bacteriology 191(11), 3760-3761. Doi 10.1128/Jb.00256-09
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Kawashima, T. et al. (2009) Domain shuffling and the evolution of vertebrates. Genome Res 19(8), 1393-403. 10.1101/gr.087072.108
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Kazakov, A. E. et al. (2009) Comparative genomics of regulation of fatty acid and branched-chain amino acid utilization in proteobacteria. J Bacteriol 191(1), 52-64. 10.1128/JB.01175-08
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Keim, P. et al. (2009) The genome and variation of Bacillus anthracis. Mol Aspects Med 30(6), 397-405. 10.1016/j.mam.2009.08.005
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Keim, P. et al. (2009) The genome and variation of Bacillus anthracis. Mol Aspects Med 30(6), 397-405. 10.1016/j.mam.2009.08.005
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Kislyuk, A. et al. (2009) Frameshift detection in prokaryotic genomic sequences. Int J Bioinform Res Appl 5(4), 458-77.
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Klein, M. G. et al. (2009) Identification and structural analysis of a novel carboxysome shell protein with implications for metabolite transport. J Mol Biol 392(2), 319-33. 10.1016/j.jmb.2009.03.056
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Kouvelis, V. N. et al. (2009) Complete genome sequence of the ethanol producer Zymomonas mobilis NCIMB 11163. J Bacteriol 191(22), 7140-1. 10.1128/JB.01084-09
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Kouvelis, V. N. et al. (2009) Complete genome sequence of the ethanol producer Zymomonas mobilis NCIMB 11163. J Bacteriol 191(22), 7140-1. 10.1128/JB.01084-09
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Kristiansson, E. et al. (2009) ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes. Bioinformatics 25(20), 2737-8. 10.1093/bioinformatics/btp508
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Kyrpides, N. C. et al. (2009) Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream. Nat Biotechnol 27(7), 627-32. 10.1038/nbt.1552
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Labutti, K. et al. (2009) Complete genome sequence of Anaerococcus prevotii type strain (PC1). Stand Genomic Sci 1(2), 159-65. 10.4056/sigs.24194
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Land, M. et al. (2009) Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122). Stand Genomic Sci 1(1), 21-8. 10.4056/sigs.1162
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Land, M. et al. (2009) Complete genome sequence of Actinosynnema mirum type strain (101(T)). Standards in Genomic Sciences 1(1), 46-53. Doi 10.4056/Sigs.21137
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Land, M. et al. (2009) Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122). Stand Genomic Sci 1(1), 21-8. 10.4056/sigs.1162
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Lane, T. W. et al. (2009) Digital Transcriptomic Analysis of Silicate Starvation Induced Triacylglycerol Formation in the Marine Diatom Thalassiosira Pseudonana.. Phycologia 48(4), 71-71.
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Lang, E. et al. (2009) Complete genome sequence of Dyadobacter fermentans type strain (NS114). Stand Genomic Sci 1(2), 133-40. 10.4056/sigs.19262
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Lapidus, A. et al. (2009) Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10). Stand Genomic Sci 1(1), 3-11. 10.4056/sigs.492
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Larsson, P. et al. (2009) Molecular evolutionary consequences of niche restriction in Francisella tularensis, a facultative intracellular pathogen. PLoS Pathog 5(6), e1000472. 10.1371/journal.ppat.1000472
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Lauro, F. M. et al. (2009) The genomic basis of trophic strategy in marine bacteria. Proceedings of the National Academy of Sciences of the United States of America 106(37), 15527-15533. DOI 10.1073/pnas.0903507106
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Le Crom, S. et al. (2009) Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing. Proceedings of the National Academy of Sciences of the United States of America 106(38), 16151-16156. DOI 10.1073/pnas.0905848106
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Lin-Jones, J. et al. (2009) Identification and Localization of Myosin Superfamily Members in Fish Retina and Retinal Pigmented Epithelium. Journal of Comparative Neurology 513(2), 209-223. Doi 10.1002/Cne.21958
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Malfatti, S. et al. (2009) Complete genome sequence of Halogeometricum borinquense type strain (PR3(T)). Standards in Genomic Sciences 1(2), 150-158. Doi 10.4056/23264
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Markowitz, V. M. et al. (2009) IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics 25(17), 2271-8. 10.1093/bioinformatics/btp393
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Marlow, H. Q. et al. (2009) Anatomy and development of the nervous system of Nematostella vectensis, an anthozoan cnidarian. Dev Neurobiol 69(4), 235-54. 10.1002/dneu.20698
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Martinez, D. et al. (2009) Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proc Natl Acad Sci U S A 106(6), 1954-9. 10.1073/pnas.0809575106
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Masta, S. E. et al. (2009) Arachnid relationships based on mitochondrial genomes: asymmetric nucleotide and amino acid bias affects phylogenetic analyses. Mol Phylogenet Evol 50(1), 117-28. 10.1016/j.ympev.2008.10.010
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Mavromatis, K. et al. (2009) Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System. Plos One 4(11). Artn E7979 Doi 10.1371/Journal.Pone.0007979
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Mavromatis, K. et al. (2009) Gene context analysis in the Integrated Microbial Genomes (IMG) data management system. PLoS One 4(11), e7979. 10.1371/journal.pone.0007979
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Mavromatis, K. et al. (2009) Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii. Plos One 4(1). Artn E4192 Doi 10.1371/Journal.Pone.0004192
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Mavromatis, K. et al. (2009) Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii. PLoS One 4(1), e4192. 10.1371/journal.pone.0004192
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Mavromatis, K. et al. (2009) The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes. Standards in Genomic Sciences 1(1), 63-67. Doi 10.4056/Sigs.632
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Mavromatis, K. et al. (2009) The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes. Standards in Genomic Sciences 1(1), 63-67. Doi 10.4056/Sigs.632
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Mavrommatis, K. et al. (2009) Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845). Stand Genomic Sci 1(2), 101-9. 10.4056/sigs.15195
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Mavrommatis, K. et al. (2009) Complete genome sequence of Cryptobacterium curtum type strain (12-3). Stand Genomic Sci 1(2), 93-100. 10.4056/sigs.12260
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McBride, M. J. et al. (2009) Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol 75(21), 6864-75. 10.1128/AEM.01495-09
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McMurdie, P. J. et al. (2009) Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides. PLoS Genet 5(11), e1000714. 10.1371/journal.pgen.1000714
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McMurdie, P. J. et al. (2009) Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides. PLoS Genet 5(11), e1000714. 10.1371/journal.pgen.1000714
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Munk, C. et al. (2009) Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21). Stand Genomic Sci 1(3), 234-41. 10.4056/sigs.47643
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Munk, C. et al. (2009) Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21). Stand Genomic Sci 1(3), 234-41. 10.4056/sigs.47643
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Nolan, M. et al. (2009) Complete genome sequence of Streptobacillus moniliformis type strain (9901). Stand Genomic Sci 1(3), 300-7. 10.4056/sigs.48727
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Nolan, M. et al. (2009) Complete genome sequence of Rhodothermus marinus type strain (R-10). Stand Genomic Sci 1(3), 283-90. 10.4056/sigs.46736
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Nolan, M. et al. (2009) Complete genome sequence of Streptobacillus moniliformis type strain (9901). Stand Genomic Sci 1(3), 300-7. 10.4056/sigs.48727
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Nolan, M. et al. (2009) Complete genome sequence of Rhodothermus marinus type strain (R-10). Stand Genomic Sci 1(3), 283-90. 10.4056/sigs.46736
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Novichkov, P. S. et al. (2009) ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes. Nucleic Acids Res 37(Database issue), D448-54. 10.1093/nar/gkn684
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Novichkov, P. S. et al. (2009) Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes. J Bacteriol 191(1), 65-73. 10.1128/JB.01237-08
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O'Rourke, J. A. et al. (2009) Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response. BMC Genomics 10, 376. 10.1186/1471-2164-10-376
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