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    ear the town of Rifle, Colorado, lies the primary field site for Phase I of the Subsurface Systems Scientific Focus Area 2.0 (SFA 2.0, sponsored by the DOE Office of Biological and Environmental Research—BER).
    Waiting to Respire
    UC Berkeley and JGI researchers joined forces and data sets to describe bacterial genomes for related (“sibling”) lineages that diverged from the bacterial tree before Cyanobacteria and its contemporaries. The information was then used to predict the metabolic strategies applied by a common ancestor to all five lineages.

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    Field researchers studying drought responses in Panicum hallii at the UT Austin Brackenridge Field Lab. (David Gilbert)
    A Model System for Perennial Grasses
    The DOE supports research programs for developing methods for converting plant biomass into sustainable fuels for cars and jets. By studying a close relative model species like Panicum hallii, researchers can develop crop improvement techniques that could be applied to the candidate bioenergy feedstock switchgrass.

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    At high temperature, S. paradoxus cells die in the act of cell division, as seen by the dyads with cell bodies shriveled away from the outer cell wall. (Images by Carly Weiss, courtesy of the Brem Lab)
    Mapping Heat Resistance in Yeasts
    In a proof-of-concept study, researchers demonstrated that a new genetic mapping strategy called RH-Seq can identify genes that promote heat resistance in the yeast Saccharomyces cerevisiae, allowing this species to grow better than its closest relative S. paradoxus at high temperatures.

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    Jorge Rodrigues is interested in the biological causes of methane flux variation in the Amazon rainforest. (Courtesy of Jorge Rodrigues)
    Methane Flux in the Amazon
    Wetlands are the single largest global source of atmospheric methane. This project aims to integrate microbial and tree genetic characteristics to measure and understand methane emissions at the heart of the Amazon rainforest.

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    Vampirovibrio chlorellavorus in yellow on green host. (Courtesy of Judith Brown)
    Infections and Host-Pathogen Interactions of Chlorella
    The non-photosynthetic, predatory cyanobacterium Vampirovibrio chlorellavorus is a globally important obligate pathogen of Chlorella species/strains, which are of interest as biofuel feedstocks.

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    Morphological diversity of Sordariales growing in the lab. Pierre Gladieux's proposal explores functional diversity in Neurospora and its relatives. (Pierre Gladieux, INRA Montpellier)
    Insights into Functional Diversity in Neurospora
    This proposal investigates the genetic bases of fungal thermophily, biomass-degradation, and fungal-bacterial interactions in Sordariales, an order of biomass-degrading fungi frequently encountered in compost and encompassing one of the few groups of thermophilic fungi.

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    Click on the image above or click here (https://youtu.be/iSEEw4Vs_B4) to watch a CRISPR Whiteboard Lesson from the Innovative Genomics Institute, this one focuses on the PAM sequence.
    Mining IMG/M for CRISPR-Associated Proteins
    Researchers report the discovery of miniature CRISPR-associated proteins that can target single-stranded DNA. The discovery was made possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the JGI. The sequences were then biochemically characterized by a team led by Jennifer Doudna’s group at UC Berkeley.

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    The Angelo Coast Range Reserve, from which soil samples were taken, protects thousands of acres of the upper watershed of South Fork of the Eel River (shown here) in Mendocino County. (Akos Kokai via Flickr, CC BY 2.0 https://www.flickr.com/photos/on_earth/17307333828/)
    DAS Tool for Genome Reconstruction from Metagenomes
    Through the JGI’s Emerging Technologies Opportunity Program (ETOP), researchers have developed and improved upon a tool that combines existing DNA sequence binning algorithms, allowing them to reconstruct more near-complete genomes from soil metagenomes compared to other methods. The work was published in Nature Microbiology.

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    DOE JGI BOOST logo
    New Software Tools Streamline DNA Sequence Design-and-Build Process
    Researchers from the U.S. Department of Energy Joint Genome Institute (DOE JGI) have developed a suite of build-optimization software tools (BOOST) to streamline the design-build transition in synthetic biology engineering workflows.

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    Cropped image of switchgrass microcosm showing established root network. (James Moran)
    FY 2019 FICUS EMSL-JGI Projects Selected
    Through the EMSL-JGI FICUS calls, users can combine EMSL’s unique imaging, omics and computational resources with cutting-edge genomics, DNA synthesis and complementary capabilities at JGI. This was the sixth FICUS call between EMSL and JGI since the collaborative science initiative was formed.

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    Preparing for a Sequence Data Deluge
    The approved CSP 2019 proposals leverage new capabilities and higher throughput in DNA sequencing, synthesis and metabolomics. Additionally, just over half of the accepted proposals come from primary investigators who have never led any previously accepted JGI proposal.

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    The molecule cyclic di-GMP plays a key role in controlling cellulose production and biofilm formation. To better understand cyclic di-GMP signaling pathways, the team developed the first chemiluminescent biosensor system for cyclic di-GMP and showed that it could be used to assay cyclic di-GMP in bacterial lysates. (Image courtesy of Hammond Lab, UC Berkeley)
    Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
    Cyclic di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that control many basic cellular functions. To better understand the dynamics of this molecule, researchers developed the first chemiluminescent biosensors for measuring cyclic di-GMP in bacteria through work enabled by the JGI’s Community Science Program (CSP).

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    One of the heated plots at the Harvard Forest (Jeff Blanchard)
    Hidden Giants in Forest Soils
    In Nature Communications, giant virus genomes have been discovered for the first time in a forest soil ecosystem by JGI and University of Massachusetts-Amherst researchers. Most of the genomes were uncovered using a "mini-metagenomics" approach that reduced the complexity of the soil microbial communities sequenced and analyzed.

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    Truffle orchard in Lorraine, France. (Francis Martin)
    Symbiosis a Driver of Truffle Diversity
    Truffles are the fruiting bodies of the ectomycorrhizal (ECM) fungal symbionts residing on host plant roots. In Nature Ecology & Evolution, an international team sought insights into the ECM lifestyle of truffle-forming species. They conducted a comparative analysis of eight Pezizomycete fungi, including four species prized as delicacies.

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    Blyttiomyces helicus on spruce pollen grain. (Joyce Longcore)
    Expanding Fungal Diversity, One Cell at a Time
    In Nature Microbiology, a team led by JGI researchers has developed a pipeline to generate genomes from single cells of uncultivated fungi. The approach was tested on several uncultivated fungal species representing early diverging fungi.

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News & Publications
Home › News & Publications › Publications › 2009 Publications

2009 Publications

Aklujkar, M. et al. (2009) The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens. BMC Microbiol 9, 109. 10.1186/1471-2180-9-109
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Allen, M. A. et al. (2009) The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation. ISME J 3(9), 1012-35. 10.1038/ismej.2009.45
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Anderson, I. et al. (2009) Complete genome sequence of Halorhabdus utahensis type strain (AX-2). Stand Genomic Sci 1(3), 218-25. 10.4056/sigs.31864
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Anderson, I. et al. (2009) Genomic characterization of methanomicrobiales reveals three classes of methanogens. PLoS One 4(6), e5797. 10.1371/journal.pone.0005797
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Anderson, I. et al. (2009) Complete genome sequence of Halorhabdus utahensis type strain (AX-2(T)). Standards in Genomic Sciences 1(3), 218-225. Doi 10.4056/Sigs.31864
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Anderson, I. J. et al. (2009) The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota. Bmc Genomics 10. Artn 145 Doi 10.1186/1471-2164-10-145
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Anderson, I. J. et al. (2009) Complete genome sequence of Methanocorpusculum labreanum type strain Z. Stand Genomic Sci 1(2), 197-203. 10.4056/sigs.35575
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Anderson, I. J. et al. (2009) Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1. Stand Genomic Sci 1(2), 189-96. 10.4056/sigs.32535
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Anderson, I. J. et al. (2009) Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1. Stand Genomic Sci 1(2), 183-8. 10.4056/sigs.30527
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Baker, S. E. et al. (2009) Selection to sequence: opportunities in fungal genomics. Environ Microbiol 11(12), 2955-8. 10.1111/j.1462-2920.2009.02112.x
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Barabote, R. D. et al. (2009) Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations. Genome Research 19(6), 1033-1043. DOI 10.1101/gr.084848.108
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Bickel, R. D. et al. (2009) Contrasting Patterns of Sequence Evolution at the Functionally Redundant bric A brac Paralogs in Drosophila melanogaster. Journal of Molecular Evolution 69(2), 194-202. DOI 10.1007/s00239-009-9265-y
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Blazewicz, J. et al. (2009) Whole genome assembly from 454 sequencing output via modified DNA graph concept. Computational Biology and Chemistry 33(3), 224-230. DOI 10.1016/j.compbiolchem.2009.04.005
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Bressler, J. et al. (2009) The INSIG2 rs7566605 genetic variant does not play a major role in obesity in a sample of 24,722 individuals from four cohorts. BMC Med Genet 10, 56. 10.1186/1471-2350-10-56
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Calton, M. A. et al. (2009) Association of functionally significant Melanocortin-4 but not Melanocortin-3 receptor mutations with severe adult obesity in a large North American case-control study. Human Molecular Genetics 18(6), 1140-1147. Doi 10.1093/Hmg/Ddn431
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Campbell, B. J. et al. (2009) Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola. PLoS Genet 5(2), e1000362. 10.1371/journal.pgen.1000362
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Carbon, S. et al. (2009) AmiGO: online access to ontology and annotation data. Bioinformatics 25(2), 288-9. 10.1093/bioinformatics/btn615
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Chain, P. S. et al. (2009) Genomics. Genome project standards in a new era of sequencing. Science 326(5950), 236-7. 10.1126/science.1180614
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Chain, P. S. et al. (2009) Genomics. Genome project standards in a new era of sequencing. Science 326(5950), 236-7. 10.1126/science.1180614
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Chovatia, M. et al. (2009) Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883(T)). Standards in Genomic Sciences 1(3), 254-261. Doi 10.4056/Sigs.40645
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Chovatia, M. et al. (2009) Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883). Stand Genomic Sci 1(3), 254-61. 10.4056/sigs.40645
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Chun, J. et al. (2009) Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae. Proceedings of the National Academy of Sciences of the United States of America 106(36), 15442-15447. DOI 10.1073/pnas.0907787106
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Clum, A. et al. (2009) Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT). Standards in Genomic Sciences 1(1), 38-45. Doi 10.4056/Sigs.1463
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Clum, A. et al. (2009) Complete genome sequence of Pirellula staleyi type strain (ATCC 27377(T)). Standards in Genomic Sciences 1(3), 308-316. Doi 10.4056/Sigs.51657
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Coleman, J. J. et al. (2009) The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion. Plos Genetics 5(8). ARTN e1000618 DOI 10.1371/journal.pgen.1000618
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Copeland, A. et al. (2009) Complete genome sequence of Catenulispora acidiphila type strain (ID 139908(T)). Standards in Genomic Sciences 1(2), 119-125. Doi 10.4056/Sigs.17259
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Copeland, A. et al. (2009) Complete genome sequence of Desulfomicrobium baculatum type strain (X). Stand Genomic Sci 1(1), 29-37. 10.4056/sigs.13134
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Cordeddu, V. et al. (2009) Mutation of SHOC2 promotes aberrant protein N-myristoylation and causes Noonan-like syndrome with loose anagen hair. Nat Genet 41(9), 1022-6. 10.1038/ng.425
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Donaher, N. et al. (2009) The complete plastid genome sequence of the secondarily nonphotosynthetic alga Cryptomonas paramecium: reduction, compaction, and accelerated evolutionary rate. Genome Biol Evol 1, 439-48. 10.1093/gbe/evp047
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Drainas, C. et al. (2009) Characterization and whole genome sequencing of Arthrobacter phenanthrenivorans, a new phenanthrene degrading bacterium. Febs Journal 276, 101-101.
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Dubchak, I. et al. (2009) Multiple whole-genome alignments without a reference organism. Genome Research 19(4), 682-689. DOI 10.1101/gr.081778.108
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Duncan, K. E. et al. (2009) Biocorrosive thermophilic microbial communities in Alaskan North Slope oil facilities. Environ Sci Technol 43(20), 7977-84. 10.1021/es9013932
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Duncan, K. E. et al. (2009) Biocorrosive thermophilic microbial communities in Alaskan North Slope oil facilities. Environ Sci Technol 43(20), 7977-84. 10.1021/es9013932
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Engelbrektson, A. et al. (2009) Probiotics to minimize the disruption of faecal microbiota in healthy subjects undergoing antibiotic therapy. J Med Microbiol 58(Pt 5), 663-70. 10.1099/jmm.0.47615-0
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Field, D. et al. (2009) Meeting Report from the Genomic Standards Consortium (GSC) Workshops 6 and 7. Stand Genomic Sci 1(1), 68-71. 10.4056/sigs.25165
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Foster, J. T. et al. (2009) Whole-genome-based phylogeny and divergence of the genus Brucella. J Bacteriol 191(8), 2864-70. 10.1128/JB.01581-08
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Gray, J. et al. (2009) A recommendation for naming transcription factor proteins in the grasses. Plant Physiol 149(1), 4-6. 10.1104/pp.108.128504
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Han, C. et al. (2009) Complete genome sequence of Kangiella koreensis type strain (SW-125). Stand Genomic Sci 1(3), 226-33. 10.4056/sigs.36635
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Han, C. et al. (2009) Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3). Stand Genomic Sci 1(1), 54-62. 10.4056/sigs.22138
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Han, C. et al. (2009) Complete genome sequence of Kangiella koreensis type strain (SW-125). Stand Genomic Sci 1(3), 226-33. 10.4056/sigs.36635
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Harris, D. R. et al. (2009) Directed evolution of ionizing radiation resistance in Escherichia coli. J Bacteriol 191(16), 5240-52. 10.1128/JB.00502-09
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Herlemann, D. P. et al. (2009) Genomic analysis of "Elusimicrobium minutum," the first cultivated representative of the phylum "Elusimicrobia" (formerly termite group 1). Appl Environ Microbiol 75(9), 2841-9. 10.1128/AEM.02698-08
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Hill, K. K. et al. (2009) Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricum type E strains. BMC Biol 7, 66. 10.1186/1741-7007-7-66
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Hill, K. K. et al. (2009) Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricum type E strains. BMC Biol 7, 66. 10.1186/1741-7007-7-66
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Hooper, S. D. et al. (2009) Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach. Nucleic Acids Research 37(7), 2096-2104. Doi 10.1093/Nar/Gkp075
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Hooper, S. D. et al. (2009) Microbial co-habitation and lateral gene transfer: what transposases can tell us. Genome Biology 10(4). Artn R45 Doi 10.1186/Gb-2009-10-4-R45
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Hugenholtz, P. et al. (2009) Focus: Synergistetes. Environ Microbiol 11(6), 1327-9. 10.1111/j.1462-2920.2009.01949.x
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Hugenholtz, P. et al. (2009) A changing of the guard. Environ Microbiol 11(3), 551-3. 10.1111/j.1462-2920.2009.01888.x
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Ivanova, N. et al. (2009) Complete genome sequence of Leptotrichia buccalis type strain (C-1013-b(T)). Standards in Genomic Sciences 1(2), 126-132. Doi 10.4056/Sigs.1854
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Ivanova, N. et al. (2009) Complete genome sequence of Sanguibacter keddieii type strain (ST-74). Stand Genomic Sci 1(2), 110-8. 10.4056/sigs.16197
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Ivanova, N. et al. (2009) Spreading of aqueous solutions of trisiloxanes and conventional surfactants over PTFE AF coated silicone wafers. Langmuir 25(6), 3564-70. 10.1021/la803679y
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Jiang, Z. H. et al. (2009) Old can be new again: HAPPY whole genome sequencing, mapping and assembly. International Journal of Biological Sciences 5(4), 298-303.
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Kataeva, I. A. et al. (2009) Genome Sequence of the Anaerobic, Thermophilic, and Cellulolytic Bacterium "Anaerocellum thermophilum" DSM 6725. Journal of Bacteriology 191(11), 3760-3761. Doi 10.1128/Jb.00256-09
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Kawashima, T. et al. (2009) Domain shuffling and the evolution of vertebrates. Genome Res 19(8), 1393-403. 10.1101/gr.087072.108
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Kazakov, A. E. et al. (2009) Comparative genomics of regulation of fatty acid and branched-chain amino acid utilization in proteobacteria. J Bacteriol 191(1), 52-64. 10.1128/JB.01175-08
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Keim, P. et al. (2009) The genome and variation of Bacillus anthracis. Mol Aspects Med 30(6), 397-405. 10.1016/j.mam.2009.08.005
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Keim, P. et al. (2009) The genome and variation of Bacillus anthracis. Mol Aspects Med 30(6), 397-405. 10.1016/j.mam.2009.08.005
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Kislyuk, A. et al. (2009) Frameshift detection in prokaryotic genomic sequences. Int J Bioinform Res Appl 5(4), 458-77.
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Klein, M. G. et al. (2009) Identification and structural analysis of a novel carboxysome shell protein with implications for metabolite transport. J Mol Biol 392(2), 319-33. 10.1016/j.jmb.2009.03.056
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Kouvelis, V. N. et al. (2009) Complete genome sequence of the ethanol producer Zymomonas mobilis NCIMB 11163. J Bacteriol 191(22), 7140-1. 10.1128/JB.01084-09
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Kouvelis, V. N. et al. (2009) Complete genome sequence of the ethanol producer Zymomonas mobilis NCIMB 11163. J Bacteriol 191(22), 7140-1. 10.1128/JB.01084-09
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Kristiansson, E. et al. (2009) ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes. Bioinformatics 25(20), 2737-8. 10.1093/bioinformatics/btp508
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Kyrpides, N. C. et al. (2009) Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream. Nat Biotechnol 27(7), 627-32. 10.1038/nbt.1552
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Labutti, K. et al. (2009) Complete genome sequence of Anaerococcus prevotii type strain (PC1). Stand Genomic Sci 1(2), 159-65. 10.4056/sigs.24194
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Land, M. et al. (2009) Complete genome sequence of Actinosynnema mirum type strain (101(T)). Standards in Genomic Sciences 1(1), 46-53. Doi 10.4056/Sigs.21137
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Land, M. et al. (2009) Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122). Stand Genomic Sci 1(1), 21-8. 10.4056/sigs.1162
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Land, M. et al. (2009) Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122). Stand Genomic Sci 1(1), 21-8. 10.4056/sigs.1162
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Lane, T. W. et al. (2009) Digital Transcriptomic Analysis of Silicate Starvation Induced Triacylglycerol Formation in the Marine Diatom Thalassiosira Pseudonana.. Phycologia 48(4), 71-71.
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Lang, E. et al. (2009) Complete genome sequence of Dyadobacter fermentans type strain (NS114). Stand Genomic Sci 1(2), 133-40. 10.4056/sigs.19262
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Lapidus, A. et al. (2009) Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10). Stand Genomic Sci 1(1), 3-11. 10.4056/sigs.492
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Larsson, P. et al. (2009) Molecular evolutionary consequences of niche restriction in Francisella tularensis, a facultative intracellular pathogen. PLoS Pathog 5(6), e1000472. 10.1371/journal.ppat.1000472
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Lauro, F. M. et al. (2009) The genomic basis of trophic strategy in marine bacteria. Proceedings of the National Academy of Sciences of the United States of America 106(37), 15527-15533. DOI 10.1073/pnas.0903507106
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Le Crom, S. et al. (2009) Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing. Proceedings of the National Academy of Sciences of the United States of America 106(38), 16151-16156. DOI 10.1073/pnas.0905848106
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Lin-Jones, J. et al. (2009) Identification and Localization of Myosin Superfamily Members in Fish Retina and Retinal Pigmented Epithelium. Journal of Comparative Neurology 513(2), 209-223. Doi 10.1002/Cne.21958
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Malfatti, S. et al. (2009) Complete genome sequence of Halogeometricum borinquense type strain (PR3(T)). Standards in Genomic Sciences 1(2), 150-158. Doi 10.4056/23264
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Markowitz, V. M. et al. (2009) IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics 25(17), 2271-8. 10.1093/bioinformatics/btp393
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Marlow, H. Q. et al. (2009) Anatomy and development of the nervous system of Nematostella vectensis, an anthozoan cnidarian. Dev Neurobiol 69(4), 235-54. 10.1002/dneu.20698
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Martinez, D. et al. (2009) Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proc Natl Acad Sci U S A 106(6), 1954-9. 10.1073/pnas.0809575106
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Masta, S. E. et al. (2009) Arachnid relationships based on mitochondrial genomes: asymmetric nucleotide and amino acid bias affects phylogenetic analyses. Mol Phylogenet Evol 50(1), 117-28. 10.1016/j.ympev.2008.10.010
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Mavromatis, K. et al. (2009) Gene context analysis in the Integrated Microbial Genomes (IMG) data management system. PLoS One 4(11), e7979. 10.1371/journal.pone.0007979
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Mavromatis, K. et al. (2009) Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii. Plos One 4(1). Artn E4192 Doi 10.1371/Journal.Pone.0004192
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Mavromatis, K. et al. (2009) Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii. PLoS One 4(1), e4192. 10.1371/journal.pone.0004192
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Mavromatis, K. et al. (2009) The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes. Standards in Genomic Sciences 1(1), 63-67. Doi 10.4056/Sigs.632
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Mavromatis, K. et al. (2009) The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes. Standards in Genomic Sciences 1(1), 63-67. Doi 10.4056/Sigs.632
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Mavromatis, K. et al. (2009) Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System. Plos One 4(11). Artn E7979 Doi 10.1371/Journal.Pone.0007979
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Mavrommatis, K. et al. (2009) Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845). Stand Genomic Sci 1(2), 101-9. 10.4056/sigs.15195
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Mavrommatis, K. et al. (2009) Complete genome sequence of Cryptobacterium curtum type strain (12-3). Stand Genomic Sci 1(2), 93-100. 10.4056/sigs.12260
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McBride, M. J. et al. (2009) Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol 75(21), 6864-75. 10.1128/AEM.01495-09
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McMurdie, P. J. et al. (2009) Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides. PLoS Genet 5(11), e1000714. 10.1371/journal.pgen.1000714
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McMurdie, P. J. et al. (2009) Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides. PLoS Genet 5(11), e1000714. 10.1371/journal.pgen.1000714
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Munk, C. et al. (2009) Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21). Stand Genomic Sci 1(3), 234-41. 10.4056/sigs.47643
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Munk, C. et al. (2009) Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21). Stand Genomic Sci 1(3), 234-41. 10.4056/sigs.47643
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Nolan, M. et al. (2009) Complete genome sequence of Streptobacillus moniliformis type strain (9901). Stand Genomic Sci 1(3), 300-7. 10.4056/sigs.48727
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Nolan, M. et al. (2009) Complete genome sequence of Rhodothermus marinus type strain (R-10). Stand Genomic Sci 1(3), 283-90. 10.4056/sigs.46736
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Nolan, M. et al. (2009) Complete genome sequence of Streptobacillus moniliformis type strain (9901). Stand Genomic Sci 1(3), 300-7. 10.4056/sigs.48727
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Nolan, M. et al. (2009) Complete genome sequence of Rhodothermus marinus type strain (R-10). Stand Genomic Sci 1(3), 283-90. 10.4056/sigs.46736
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Novichkov, P. S. et al. (2009) ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes. Nucleic Acids Res 37(Database issue), D448-54. 10.1093/nar/gkn684
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Novichkov, P. S. et al. (2009) Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes. J Bacteriol 191(1), 65-73. 10.1128/JB.01237-08
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O'Rourke, J. A. et al. (2009) Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response. BMC Genomics 10, 376. 10.1186/1471-2164-10-376
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