(2013) Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema.
Stand Genomic Sci 8(1), 88-105.
10.4056/sigs.3096473
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(2013) Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean.
ISME J 7(2), 256-68.
10.1038/ismej.2012.108
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(2013) Genome sequence of Frateuria aurantia type strain (Kondo 67(T)), a xanthomonade isolated from Lilium auratium Lindl.
Stand Genomic Sci 9(1), 83-92.
10.4056/sigs.4338002
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(2013) Frontiers, Opportunities, and Challenges in Biochemical and Chemical Catalysis of CO Fixation.
Chem Rev .
10.1021/cr300463y
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(2013) Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens.
Appl Environ Microbiol 79(12), 3770-8.
10.1128/AEM.03833-12
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(2013) Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.
Appl Environ Microbiol 79(12), 3724-33.
10.1128/AEM.00518-13
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(2013) Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens.
Genome Announc 1(1).
10.1128/genomeA.00238-12
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(2013) Complete Genome of Serratia sp. Strain FGI 94, a Strain Associated with Leaf-Cutter Ant Fungus Gardens.
Genome Announc 1(2), e0023912.
10.1128/genomeA.00239-12
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(2013) Functional Genomics of Novel Secondary Metabolites from Diverse Cyanobacteria Using Untargeted Metabolomics.
Mar Drugs 11(10), 3617-3631.
10.3390/md11103617
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(2013) A detailed gene expression study of the Miscanthus genus reveals changes in the transcriptome associated with the rejuvenation of spring rhizomes.
BMC Genomics 14, 864.
10.1186/1471-2164-14-864
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(2013) Fungal genomes mining to discover novel sterol esterases and lipases as catalysts.
BMC Genomics 14, 712.
10.1186/1471-2164-14-712
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(2013) A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae.
PeerJ 1, e23.
10.7717/peerj.23
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(2013) Exploring the roles of DNA methylation in the metal-reducing bacterium Shewanella oneidensis MR-1.
J Bacteriol .
10.1128/JB.00935-13
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(2013) Genome sequence of Phaeobacter caeruleus type strain (DSM 24564 T ), a surface-associated member of the marine Roseobacter clade.
Stand Genomic Sci 8(3).
10.4056/sigs.3927623
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(2013) Phylogenetic and Phylogenomic overview of the Polyporales.
Mycologia .
10.3852/13-003
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(2013) Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations.
Stand Genomic Sci 7(3), 469-82.
10.4056/sigs.3517166
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(2013) Polynucleobacter necessarius, a model for genome reduction in both free-living and symbiotic bacteria.
Proc Natl Acad Sci U S A 110(46), 18590-5.
10.1073/pnas.1316687110
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(2013) Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.
Gigascience 2(1), 10.
10.1186/2047-217X-2-10
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(2013) Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives.
Genome Announc 1(3).
10.1128/genomeA.00323-13
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(2013) Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336(T)), a representative of the Roseobacter clade.
Stand Genomic Sci 9(1), 128-41.
10.4056/sigs.4297965
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(2013) Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics.
ISME J 7(4), 817-29.
10.1038/ismej.2012.150
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(2013) Draft Genome Sequence of Pseudomonas azotifigens Strain DSM 17556T (6H33bT), a Nitrogen Fixer Strain Isolated from a Compost Pile.
Genome Announc 1(6).
10.1128/genomeA.00893-13
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(2013) Evidence for the widespread distribution of CRISPR-Cas system in the Phylum Cyanobacteria.
RNA Biol 10(5), 687-93.
10.4161/rna.24571
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(2013) The structure of CcmP, a tandem bacterial microcompartment domain protein from the beta-carboxysome, forms a subcompartment within a microcompartment.
J Biol Chem 288(22), 16055-63.
10.1074/jbc.M113.456897
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(2013) Biogenesis of a bacterial organelle: the carboxysome assembly pathway.
Cell 155(5), 1131-40.
10.1016/j.cell.2013.10.044
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(2013) UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota.
Proc Natl Acad Sci U S A 110(14), 5540-5.
10.1073/pnas.1303090110
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(2013) Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment.
Nat Commun 4, 2120.
10.1038/ncomms3120
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(2013) Complete genome sequence of Halorhodospira halophila SL1.
Stand Genomic Sci 8(2), 206-14.
10.4056/sigs.3677284
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(2013) Draft genome sequence of Rhodococcus rhodochrous strain ATCC 17895.
Stand Genomic Sci 9(1), 175-84.
10.4056/sigs.4418165
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(2013) Improving microbial genome annotations in an integrated database context.
PLoS One 8(2), e54859.
10.1371/journal.pone.0054859
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(2013) Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.
Nat Methods 10(6), 563-9.
10.1038/nmeth.2474
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(2013) Fungal-specific transcription factor AbPf2 activates pathogenicity in Alternaria brassicicola.
Plant J 75(3), 498-514.
10.1111/tpj.12217
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(2013) Draft genome sequence of Rubidibacter lacunae strain KORDI 51-2(T), a cyanobacterium isolated from seawater of Chuuk lagoon.
Stand Genomic Sci 9(1), 197-204.
10.4056/sigs.4398180
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(2013) RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes.
BMC Genomics 14, 213.
10.1186/1471-2164-14-213
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(2013) ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies.
Bioinformatics 29(4), 435-43.
10.1093/bioinformatics/bts723
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(2013) Yellowstone lake nanoarchaeota.
Front Microbiol 4, 274.
10.3389/fmicb.2013.00274
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(2013) Sediment microbial communities in Great Boiling Spring are controlled by temperature and distinct from water communities.
ISME J 7(4), 718-29.
10.1038/ismej.2012.157
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(2013) Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens.
PLoS Genet 9(1), e1003233.
10.1371/journal.pgen.1003233
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(2013) Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass.
PLoS One 8(7), e68465.
10.1371/journal.pone.0068465
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(2013) Genome Sequence of Streptomyces viridosporus Strain T7A ATCC 39115, a Lignin-Degrading Actinomycete.
Genome Announc 1(4).
10.1128/genomeA.00416-13
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(2013) High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake.
Proc Natl Acad Sci U S A 110(42), 16939-44.
10.1073/pnas.1307090110
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(2013) An extremely halophilic proteobacterium combines a highly acidic proteome with a low cytoplasmic potassium content.
J Biol Chem 288(1), 581-8.
10.1074/jbc.M112.420505
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(2013) Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage.
Nat Commun 4, 1854.
10.1038/ncomms2884
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(2013) Genome sequence of Phaeobacter daeponensis type strain (DSM 23529(T)), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis.
Stand Genomic Sci 9(1), 142-159.
10.4056/sigs.4287962
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(2013) Genome sequence of Phaeobacter inhibens type strain (T5(T)), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens.
Stand Genomic Sci 9(2), 334-350.
10.4056/sigs.4448212
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(2013) Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data.
Bioinformatics 29(16), 2059-61.
10.1093/bioinformatics/btt318
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(2013) Staphylococcus aureus subsp. anaerobius strain ST1464 genome sequence.
Stand Genomic Sci 9(1), 1-13.
10.4056/sigs.3748294
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(2013) Complete Genome Sequence of the Hyperthermophilic Sulfate-Reducing Bacterium Thermodesulfobacterium geofontis OPF15T.
Genome Announc 1(2), e0016213.
10.1128/genomeA.00162-13
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(2013) Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics.
Front Microbiol 4, 254.
10.3389/fmicb.2013.00254
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(2013) Draft Genome Sequence of an Oscillatorian Cyanobacterium, Strain ESFC-1.
Genome Announc 1(4).
10.1128/genomeA.00527-13
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(2013) Comparative genomics of two 'Candidatus Accumulibacter' clades performing biological phosphorus removal.
ISME J .
10.1038/ismej.2013.117
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(2013) Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566(T.).
Stand Genomic Sci 8(3), 450-64.
10.4056/sigs.383362
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(2013) Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58.
Stand Genomic Sci 9(2), 325-33.
10.4056/sigs.3797438
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(2013) Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton.
Isme Journal 7(1), 137-147.
DOI 10.1038/ismej.2012.86
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(2013) A 34K SNP genotyping array for Populus trichocarpa: design, application to the study of natural populations and transferability to other Populus species.
Mol Ecol Resour 13(2), 306-23.
10.1111/1755-0998.12056
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(2013) Draft genome sequence of Frankia sp. strain CN3, an atypical, noninfective (Nod-) ineffective (Fix-) isolate from Coriaria nepalensis.
Genome Announc 1(2), e0008513.
10.1128/genomeA.00085-13
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(2013) The central role of selenium in the biochemistry and ecology of the harmful pelagophyte, Aureococcus anophagefferens.
ISME J 7(7), 1333-43.
10.1038/ismej.2013.25
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(2013) Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes.
BMC Genomics 14, 7.
10.1186/1471-2164-14-7
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(2013) De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana.
BMC Genomics 14, 563.
10.1186/1471-2164-14-563
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(2013) Genome of the Root-Associated Plant Growth-Promoting Bacterium Variovorax paradoxus Strain EPS.
Genome Announc 1(5).
10.1128/genomeA.00843-13
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(2013) Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat.
ISME J 7(1), 50-60.
10.1038/ismej.2012.79
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(2013) Non-contiguous finished genome sequence and description of Halopiger djelfamassiliensis sp. nov.
Stand Genomic Sci 9(1), 160-74.
10.4056/sigs.4578289
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(2013) An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions.
Nat Genet 45(8), 891-8.
10.1038/ng.2684
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(2013) Comparative metagenomic and metatranscriptomic analysis of hindgut paunch microbiota in wood- and dung-feeding higher termites.
PLoS One 8(4), e61126.
10.1371/journal.pone.0061126
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(2013) Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing.
Proc Natl Acad Sci U S A 110(48), 19478-82.
10.1073/pnas.1319032110
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(2013) Hypoxic survival requires a 2-on-2 hemoglobin in a process involving nitric oxide.
Proc Natl Acad Sci U S A 110(26), 10854-9.
10.1073/pnas.1302592110
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(2013) Complete Genome Sequence of Micromonospora Strain L5, a Potential Plant-Growth-Regulating Actinomycete, Originally Isolated from Casuarina equisetifolia Root Nodules.
Genome Announc 1(5).
10.1128/genomeA.00759-13
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(2013) Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling.
Microbiome 1(1), 22.
10.1186/2049-2618-1-22.
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(2013) Relationship between abundance and specific activity of bacterioplankton in open ocean surface waters.
Appl Environ Microbiol 79(1), 177-84.
10.1128/AEM.02155-12
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(2013) Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055(T)).
Stand Genomic Sci 8(2), 177-87.
10.4056/sigs.3637201
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(2013) Metabolic reprogramming by viruses in the sunlit and dark ocean.
Genome Biol 14(11), R123.
10.1186/gb-2013-14-11-r123
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(2013) Metabolic reprogramming by viruses in the sunlit and dark ocean.
Genome Biol 14(11), R123.
10.1186/gb-2013-14-11-r123
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(2013) Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry.
Front Microbiol 4, 95.
10.3389/fmicb.2013.00095
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(2013) The YNP Metagenome Project: Environmental Parameters Responsible for Microbial Distribution in the Yellowstone Geothermal Ecosystem.
Front Microbiol 4, 67.
10.3389/fmicb.2013.00067
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(2013) Identification and characterization of functional centromeres of the common bean.
Plant J 76(1), 47-60.
10.1111/tpj.12269
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(2013) Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges.
ISME J 7(12), 2287-300.
10.1038/ismej.2013.111
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(2013) New family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria.
J Bacteriol 195(19), 4466-75.
10.1128/JB.00679-13
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(2013) Transcription factor family-based reconstruction of singleton regulons and study of the Crp/Fnr, ArsR, and GntR families in Desulfovibrionales genomes.
J Bacteriol 195(1), 29-38.
10.1128/JB.01977-12
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(2013) PSimScan: algorithm and utility for fast protein similarity search.
PLoS One 8(3), e58505.
10.1371/journal.pone.0058505
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(2013) Non-contiguous finished genome sequence and description of Bacillus massiliogorillae sp. nov.
Stand Genomic Sci 9(1), 93-105.
10.4056/sigs.4388124
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(2013) Introduction: Sequences and consequences.
Biochemistry and Molecular Biology Education 41(1), 12-15.
Doi 10.1002/Bmb.20660
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(2013) Structural, Mechanistic and Genomic Insights into OCP-Mediated Photoprotection.
Genomics of Cyanobacteria 65, 1-26.
Doi 10.1016/B978-0-12-394313-2.00001-9
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(2013) Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production.
Stand Genomic Sci 9(2), 359-69.
10.4056/sigs.4348035
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(2013) The Orange Carotenoid Protein: a blue-green light photoactive protein.
Photochem Photobiol Sci 12(7), 1135-43.
10.1039/c3pp25406b
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(2013) Genome Sequence of the Obligate Gammaproteobacterial Methanotroph Methylomicrobium album Strain BG8.
Genome Announc 1(2), e0017013.
10.1128/genomeA.00170-13
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(2013) Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments.
Front Microbiol 4, 106.
10.3389/fmicb.2013.00106
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(2013) Comparative Genomics Analysis of Trichoderma reesei Strains .
Industrial Biotechnology 9(6), 352-367.
10.1089/ind.2013.0015
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(2013) Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park.
ISME J 7(3), 622-34.
10.1038/ismej.2012.132
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(2013) Complete genome sequence of Dehalobacter restrictus PER-K23 T.
Stand Genomic Sci 8(3).
10.4056/sigs.3787426
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(2013) The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling.
Front Microbiol 4, 323.
10.3389/fmicb.2013.00323
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(2013) The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling.
Front Microbiol 4, 323.
10.3389/fmicb.2013.00323
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(2013) Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692(T)) from the alkaline Lake Magadi in the East African Rift.
Stand Genomic Sci 8(2), 165-76.
10.4056/sigs.3607108
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(2013) Non-contiguous finished genome sequence and description of Clostridium dakarense sp. nov.
Stand Genomic Sci 9(1), 14-27.
10.4056/sigs.4097825
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(2013) Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence.
G3 (Bethesda) 3(1), 41-63.
10.1534/g3.112.004044
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(2013) Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).
Plant J 76(4), 718-27.
10.1111/tpj.12319
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(2013) Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA(T)).
Stand Genomic Sci 8(1), 47-57.
10.4056/sigs.3547050
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(2013) Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)).
Stand Genomic Sci 8(1), 26-36.
10.4056/sigs.3527032
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(2013) Non-contiguous finished genome sequence and description of Bartonella florenciae sp. nov.
Stand Genomic Sci 9(1), 185-96.
10.4056/sigs.4358060
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(2013) Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134(T)).
Stand Genomic Sci 9(1), 28-41.
10.4056/sigs.4207886
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(2013) Non-contiguous finished genome sequence and description of Nosocomiicoccus massiliensis sp. nov.
Stand Genomic Sci 9(1), 205-19.
10.4056/sigs.4378121
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(2013) Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin.
Genome Announc 1(1).
10.1128/genomeA.00106-12
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(2013) Complete genome sequence of Arthrobacter sp. strain FB24.
Stand Genomic Sci 9(1), 106-16.
10.4056/sigs.4438185
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(2013) Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4.
Stand Genomic Sci 8(3), 441-9.
10.4056/sigs.4027757
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(2013) BioPig: A Hadoop-based Analytic Toolkit for Large-Scale Sequence Data.
Bioinformatics .
10.1093/bioinformatics/btt528
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(2013) Draft Genome Sequence of Frankia sp. Strain BMG5.12, a Nitrogen-Fixing Actinobacterium Isolated from Tunisian Soils.
Genome Announc 1(4).
10.1128/genomeA.00468-13
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(2013) RegPrecise 3.0--a resource for genome-scale exploration of transcriptional regulation in bacteria.
BMC Genomics 14, 745.
10.1186/1471-2164-14-745
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(2013) Assembling single-cell genomes and mini-metagenomes from chimeric MDA products.
J Comput Biol 20(10), 714-37.
10.1089/cmb.2013.0084
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(2013) Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio.
Stand Genomic Sci 9(1), 57-70.
10.4056/sigs.4237901
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(2013) Pyrosequencing reveals high-temperature cellulolytic microbial consortia in Great Boiling Spring after in situ lignocellulose enrichment.
PLoS One 8(3), e59927.
10.1371/journal.pone.0059927
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(2013) Diversity and heritability of the maize rhizosphere microbiome under field conditions.
Proc Natl Acad Sci U S A 110(16), 6548-53.
10.1073/pnas.1302837110
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(2013) Genome sequence and description of the heavy metal tolerant bacterium Lysinibacillus sphaericus strain OT4b.31.
Stand Genomic Sci 9(1), 42-56.
10.4056/sigs.4227894
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(2013) Carotenoid-protein interaction alters the S(1) energy of hydroxyechinenone in the Orange Carotenoid Protein.
Biochim Biophys Acta 1827(3), 248-54.
10.1016/j.bbabio.2012.10.005
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(2013) Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust.
ISME J .
10.1038/ismej.2013.83
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(2013) Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil.
Stand Genomic Sci 9(1), 71-82.
10.4056/sigs.4328031
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(2013) Complete genome sequence of Granulicella mallensis type strain MP5ACTX8(T), an acidobacterium from tundra soil.
Stand Genomic Sci 9(1), 71-82.
10.4056/sigs.4328031
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(2013) Pan genome of the phytoplankton Emiliania underpins its global distribution.
Nature 499(7457), 209-13.
10.1038/nature12221
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(2013) Genome sequence of the Lebeckia ambigua-nodulating "Burkholderia sprentiae" strain WSM5005.
Standards in Genomic Sciences 9(2), 385-394.
10.4056/Sigs.4558268
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(2013) Genome sequence of the Ornithopus/Lupinus-nodulating Bradyrhizobium sp. strain WSM471.
Stand Genomic Sci 9(2), 254-63.
10.4056/sigs.4498256
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(2013) Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI943.
Stand Genomic Sci 9(2), 232-42.
10.4056/sigs.4478252
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(2013) Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565.
Stand Genomic Sci 9(2), 220-31.
10.4056/sigs.4468250
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(2013) Genome sequence of the Trifolium rueppellianum -nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012.
Stand Genomic Sci 9(2), 283-93.
10.4056/sigs.4528262
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(2013) Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075(T.).
Stand Genomic Sci 9(2), 294-303.
10.4056/sigs.4538264
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(2013) Complete genome sequence of Mesorhizobium australicum type strain (WSM2073(T)).
Stand Genomic Sci 9(2), 410-9.
10.4056/sigs.4568282
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(2013) Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597.
Stand Genomic Sci 9(2), 264-72.
10.4056/sigs.4508258
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(2013) Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417.
Stand Genomic Sci 9(2), 273-82.
10.4056/sigs.4518260
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(2013) Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1.
Stand Genomic Sci 9(2), 243-253.
10.4056/sigs.4488254
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(2013) Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella.
Science 342(6165), 1468-73.
10.1126/science.1246275
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(2013) Genome sequence of the Leisingera aquimarina type strain (DSM 24565(T)), a member of the marine Roseobacter clade rich in extrachromosomal elements.
Stand Genomic Sci 8(3), 389-402.
10.4056/sigs.3858183
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(2013) Genome sequence of the Litoreibacter arenae type strain (DSM 19593(T)), a member of the Roseobacter clade isolated from sea sand.
Stand Genomic Sci 9(1), 117-127.
10.4056/sigs.4258318
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(2013) Insights into the phylogeny and coding potential of microbial dark matter.
Nature 499(7459), 431-7.
10.1038/nature12352
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(2013) Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill.
ISME J .
10.1038/ismej.2013.129
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(2013) Comparative genomic analysis of phylogenetically closely related Hydrogenobaculum sp. isolates from Yellowstone National Park.
Appl Environ Microbiol 79(9), 2932-43.
10.1128/AEM.03591-12
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(2013) Metagenomic profiling reveals lignocellulose degrading system in a microbial community associated with a wood-feeding beetle.
PLoS One 8(9), e73827.
10.1371/journal.pone.0073827
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(2013) Draft genome sequence of Frankia sp. strain QA3, a nitrogen-fixing actinobacterium isolated from the root nodule of Alnus nitida.
Genome Announc 1(2), e0010313.
10.1128/genomeA.00103-13
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(2013) Community-wide plasmid gene mobilization and selection.
ISME J 7(6), 1173-86.
10.1038/ismej.2013.13
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(2013) Comparative Genomic Analysis of the Endosymbionts of Herbivorous Insects Reveals Eco-Environmental Adaptations: Biotechnology Applications.
PLoS Genet 9(1).
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(2013) Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing.
Proc Natl Acad Sci U S A 110(3), 1053-1058.
Doi 10.1073/Pnas.1217107110
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(2013) Insights into bilaterian evolution from three spiralian genomes.
Nature 493(7433), 526-531.
Doi 10.1038/Nature11696
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(2013) The Capsella rubella genome and the genomic consequences of rapid mating system evolution.
Nat Genet 45(7), 831-5.
10.1038/ng.2669
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(2013) Draft Genome Sequence and Description of Janthinobacterium sp. Strain CG3, a Psychrotolerant Antarctic Supraglacial Stream Bacterium.
Genome Announc 1(6).
10.1128/genomeA.00960-13
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(2013) Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H(T)), and emendation of the species Turneriella parva.
Stand Genomic Sci 8(2), 228-38.
10.4056/sigs.3617113
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(2013) High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)).
Stand Genomic Sci 8(1), 37-46.
10.4056/sigs.3537045
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(2013) Complete genome sequence of Coriobacterium glomerans type strain (PW2(T)) from the midgut of Pyrrhocoris apterus L. (red soldier bug).
Stand Genomic Sci 8(1), 15-25.
10.4056/sigs.3507020
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(2013) Comparative analysis of 126 cyanobacterial genomes reveals evidence of functional diversity among homologs of the redox-regulated CP12 protein.
Plant Physiol 161(2), 824-35.
10.1104/pp.112.210542
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(2013) Crystal structure of the FRP and identification of the active site for modulation of OCP-mediated photoprotection in cyanobacteria.
Proc Natl Acad Sci U S A 110(24), 10022-7.
10.1073/pnas.1303673110
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(2013) Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species.
Photosynth Res .
10.1007/s11120-013-9909-z
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(2013) Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean.
Proc Natl Acad Sci U S A 110(28), 11463-8.
10.1073/pnas.1304246110
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(2013) Genomewide annotation and comparative genomics of cytochrome P450 monooxygenases (P450s) in the polypore species Bjerkandera adusta, Ganoderma sp. and Phlebia brevispora.
Mycologia 105(6), 1445-55.
10.3852/13-002
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(2013) Genome sequence of Ensifer sp TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert.
Standards in Genomic Sciences 9(2), 304-314.
10.4056/Sigs.4598281
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(2013) Metagenome sequence analysis of filamentous microbial communities obtained from geochemically distinct geothermal channels reveals specialization of three aquificales lineages.
Front Microbiol 4, 84.
10.3389/fmicb.2013.00084
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(2013) Increased production of fatty acids and triglycerides in Aspergillus oryzae by enhancing expressions of fatty acid synthesis-related genes.
Appl Microbiol Biotechnol 97(1), 269-81.
10.1007/s00253-012-4193-y
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(2013) Genome sequence of Ensifer medicae strain WSM1369; an effective microsymbiont of the annual legume Medicago sphaerocarpos.
Stand Genomic Sci 9(2), 420-430.
10.4056/sigs.4838624
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(2013) Genome sequence of Ensifer meliloti strain WSM1022; a highly effective microsymbiont of the model legume Medicago truncatula A17.
Standards in Genomic Sciences 9(2), 315-324.
10.4056/Sigs.4608286
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(2013) Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis.
Proc Natl Acad Sci U S A 110(50), 20117-22.
10.1073/pnas.1313452110
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(2013) The unique metabolism of SAR11 aquatic bacteria.
J Microbiol 51(2), 147-53.
10.1007/s12275-013-2671-2
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(2013) The metagenome of the marine anammox bacterium 'Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium.
Environ Microbiol 15(5), 1275-89.
10.1111/j.1462-2920.2012.02774.x
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(2013) The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.
Nat Genet 45(5), 487-94.
10.1038/ng.2586
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(2013) Veillonella, Firmicutes: Microbes disguised as Gram negatives.
Stand Genomic Sci 9(2), 431-48.
10.4056/sigs.2981345
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(2013) Genome analysis of Desulfotomaculum kuznetsovii strain 17(T) reveals a physiological similarity with Pelotomaculum thermopropionicum strain SI(T).
Stand Genomic Sci 8(1), 69-87.
10.4056/sigs.3627141
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(2013) Draft Genome Sequence of Frankia sp. Strain BCU110501, a Nitrogen-Fixing Actinobacterium Isolated from Nodules of Discaria trinevis.
Genome Announc 1(4).
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(2013) Permanent draft genome sequence of Comamonas testosteroni KF-1.
Stand Genomic Sci 8(2), 239-54.
10.4056/sigs.3847890
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(2013) Systematic identification of gene families for use as "markers" for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups.
PLoS One 8(10), e77033.
10.1371/journal.pone.0077033
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(2013) Revisiting the sequencing of the first tree genome: Populus trichocarpa.
Tree Physiol 33(4), 357-64.
10.1093/treephys/tps081
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(2013) Genome Sequences of Two Klebsiella pneumoniae Isolates from Different Geographical Regions, Argentina (Strain JHCK1) and the United States (Strain VA360).
Genome Announc 1(2).
10.1128/genomeA.00168-13
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(2013) The Reference Genome of the Halophytic Plant Eutrema salsugineum.
Front Plant Sci 4, 46.
10.3389/fpls.2013.00046
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(2013) Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade.
Genome Biol 14(11), R130.
10.1186/gb-2013-14-11-r130
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(2013) Cyanobacterial-based approaches to improving photosynthesis in plants.
J Exp Bot 64(3), 787-98.
10.1093/jxb/ers294
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(2013) The crystal structures of the tri-functional Chloroflexus aurantiacus and bi-functional Rhodobacter sphaeroides malyl-CoA lyases and comparison with CitE-like superfamily enzymes and malate synthases.
BMC Struct Biol 13, 28.
10.1186/1472-6807-13-28
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(2013) Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.).
Plant J 74(1), 160-73.
10.1111/tpj.12104
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(2013) Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations.
Nature 504(7479), 306-10.
10.1038/nature12716
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