(2017) Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio.
PLoS One 12(3), e0173517.
10.1371/journal.pone.0173517
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(2017) Evolution of copper arsenate resistance for enhanced enargite bioleaching using the extreme thermoacidophile Metallosphaera sedula.
J Ind Microbiol Biotechnol 44(12), 1613-1625.
10.1007/s10295-017-1973-5
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(2017) Phylogenetics and Phylogenomics of Rust Fungi.
Adv Genet 100, 267-307.
10.1016/bs.adgen.2017.09.011
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(2017) Comparative transcriptomics as a guide to natural product discovery and biosynthetic gene cluster functionality.
Proc Natl Acad Sci U S A 114(52), E11121-E11130.
10.1073/pnas.1714381115
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(2017) Clustering Categorical Data.
Wiley StatsRef: Statistics Reference Online .
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(2017) Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions.
Nat Commun 8(1), 1567.
10.1038/s41467-017-01753-4
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(2017) Draft genome sequences of Bradyrhizobium shewense sp. nov. ERR11(T) and Bradyrhizobium yuanmingense CCBAU 10071(T).
Stand Genomic Sci 12, 74.
10.1186/s40793-017-0283-x
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(2017) Draft genome sequence of type strain HBR26T and description of Rhizobium aethiopicum sp. nov.
Stand Genomic Sci 12, 14.
10.1186/s40793-017-0220-z
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(2017) Absence of genome reduction in diverse, facultative endohyphal bacteria.
Microb Genom 3(2), e000101.
10.1099/mgen.0.000101
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(2017) Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla.
Front Microbiol 8, 2264.
10.3389/fmicb.2017.02264
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(2017) Genomic Comparison of Two Family-Level Groups of the Uncultivated NAG1 Archaeal Lineage from Chemically and Geographically Disparate Hot Springs.
Front Microbiol 8, 2082.
10.3389/fmicb.2017.02082
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(2017) Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato.
Front Microbiol 8, 1154.
10.3389/fmicb.2017.01154
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(2017) Population genomics of picophytoplankton unveils novel chromosome hypervariability.
Sci Adv 3(7), e1700239.
10.1126/sciadv.1700239
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(2017) Sulfide Generation by Dominant Halanaerobium Microorganisms in Hydraulically Fractured Shales.
mSphere 2(4).
10.1128/mSphereDirect.00257-17
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(2017) Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Nat Biotechnol 35(8), 725-731.
10.1038/nbt.3893
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(2017) Sequencing of Genomes from Environmental Single Cells.
Methods Mol Biol 1712, 97-111.
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(2017) Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.
Cell 171(2), 287-304 e15.
10.1016/j.cell.2017.09.030
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(2017) Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta).
Proc Natl Acad Sci U S A 114(31), E6361-E6370.
10.1073/pnas.1703088114
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(2017) Draft Nuclear Genome Sequence of the Liquid Hydrocarbon-Accumulating Green Microalga Botryococcus braunii Race B (Showa).
Genome Announc 5(16).
10.1128/genomeA.00215-17
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(2017) Draft Nuclear Genome Sequence of the Liquid Hydrocarbon-Accumulating Green Microalga Botryococcus braunii Race B (Showa).
Genome Announc 5(16).
10.1128/genomeA.00215-17
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(2017) Genomic composition and dynamics among Methanomicrobiales predict adaptation to contrasting environments.
ISME J 11(1), 87-99.
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(2017) BBMerge - Accurate paired shotgun read merging via overlap.
PLoS One 12(10), e0185056.
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(2017) Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales.
BMC Genomics 18(1), 883.
10.1186/s12864-017-4243-z
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(2017) Development and characterization of a thermophilic, lignin degrading microbiota.
Process Biochemistry 63, 193-203.
10.1016/j.procbio.2017.08.018
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(2017) IMG/M: integrated genome and metagenome comparative data analysis system.
Nucleic Acids Res 45(D1), D507-D516.
10.1093/nar/gkw929
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(2017) Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota.
ISME J .
10.1038/s41396-017-0002-z
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(2017) Draft genome sequence of Marinobacterium rhizophilum CL-YJ9(T) (DSM 18822(T)), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica.
Stand Genomic Sci 12, 65.
10.1186/s40793-017-0275-x
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(2017) Taxonomic and Functional Diversity of a Quercus pyrenaica Willd. Rhizospheric Microbiome in the Mediterranean Mountains.
Forests 8(10).
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(2017) Genome-wide identification of bacterial plant colonization genes.
PLoS Biol 15(9), e2002860.
10.1371/journal.pbio.2002860
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(2017) The SlZRT1 Gene Encodes a Plasma Membrane-Located ZIP (Zrt-, Irt-Like Protein) Transporter in the Ectomycorrhizal Fungus Suillus luteus.
Front Microbiol 8, 2320.
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(2017) Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species.
Front Plant Sci 8, 184.
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(2017) Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate.
Stand Genomic Sci 12, 67.
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(2017) Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks.
Methods Mol Biol 1613, 85-99.
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(2017) Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments.
Biotechnol Biofuels 10, 35.
10.1186/s13068-017-0700-9
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(2017) Bradyrhizobium sacchari sp. nov., a legume nodulating bacterium isolated from sugarcane roots.
Arch Microbiol 199(9), 1251-1258.
10.1007/s00203-017-1398-6
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(2017) OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging.
Anal Chem 89(11), 5818-5823.
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(2017) Oxidative cyclization of prodigiosin by an alkylglycerol monooxygenase-like enzyme.
Nat Chem Biol .
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(2017) Oxidative cyclization of prodigiosin by an alkylglycerol monooxygenase-like enzyme.
Nat Chem Biol 13(11), 1155-1157.
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(2017) Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.
Genome Biol 18(1), 28.
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(2017) Draft genome and description of Consotaella salsifontis gen. nov. sp. nov., a halophilic, free-living, nitrogen-fixing alphaproteobacterium isolated from an ancient terrestrial saline spring.
Int J Syst Evol Microbiol .
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(2017) Draft genome sequence of Dethiosulfovibrio salsuginis DSM 21565(T) an anaerobic, slightly halophilic bacterium isolated from a Colombian saline spring.
Stand Genomic Sci 12, 86.
10.1186/s40793-017-0303-x
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(2017) Selinene Volatiles Are Essential Precursors for Maize Defense Promoting Fungal Pathogen Resistance.
Plant Physiol 175(3), 1455-1468.
10.1104/pp.17.00879
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(2017) The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation.
Environ Microbiol 19(3), 1338-1354.
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(2017) A combinatorial approach to synthetic transcription factor-promoter combinations for yeast strain engineering.
Yeast .
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(2017) Novel approaches in function-driven single-cell genomics.
FEMS Microbiol Rev .
10.1093/femsre/fux009
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(2017) Novel approaches in function-driven single-cell genomics.
FEMS Microbiol Rev .
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(2017) Deletion of the hfsB gene increases ethanol production in Thermoanaerobacterium saccharolyticum and several other thermophilic anaerobic bacteria.
Biotechnol Biofuels 10, 282.
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(2017) Comparison of soil biosolarization with mesophilic and thermophilic solid digestates on soil microbial quantity and diversity.
Applied Soil Ecology 119, 183-191.
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(2017) The rhizosphere microbiome of burned holm-oak: potential role of the genus Arthrobacter in the recovery of burned soils.
Sci Rep 7(1), 6008.
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(2017) Fungal and plant gene expression in the Tulasnella calospora-Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas.
New Phytol 213(1), 365-379.
10.1111/nph.14279
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(2017) Draft Genome Sequences of Two Gammaproteobacterial Methanotrophs Isolated from Rice Ecosystems.
Genome Announc 5(33).
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(2017) Droplet microfluidics for synthetic biology.
Lab Chip .
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(2017) Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations.
ISME J .
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(2017) Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress.
PLoS Biol 15(12), e2004050.
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(2017) Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12.
Genom Data 14, 21-23.
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(2017) Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria.
Front Microbiol 8, 2340.
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(2017) Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach.
PLoS One 12(5), e0177189.
10.1371/journal.pone.0177189
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(2017) Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach.
PLoS One 12(5), e0177189.
10.1371/journal.pone.0177189
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(2017) Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.
Nat Commun 8(1), 2184.
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(2017) Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.
Nat Commun 8(1), 2184.
10.1038/s41467-017-02292-8
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(2017) Genome Sequence of Oceanicola sp. Strain MCTG156(1a), Isolated from a Scottish Coastal Phytoplankton Net Sample.
Genome Announc 5(32).
10.1128/genomeA.00796-17
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(2017) Genome Sequence of Roseovarius sp. Strain MCTG156(2b) Isolated from a Phytoplankton Net Trawl on the Scottish West Coast.
Genome Announc 5(35).
10.1128/genomeA.00837-17
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(2017) IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes.
Nucleic Acids Res 45(D1), D560-D565.
10.1093/nar/gkw1103
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(2017) Reclassification of a Polynucleobacter cosmopolitanus strain isolated from tropical Lake Victoria as Polynucleobacter victoriensis sp. nov.
Int J Syst Evol Microbiol .
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(2017) A parts list for fungal cellulosomes revealed by comparative genomics.
Nat Microbiol 2, 17087.
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(2017) A parts list for fungal cellulosomes revealed by comparative genomics.
Nat Microbiol 2, 17087.
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(2017) Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI.
mSystems 2(4).
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(2017) A thermostable Cas9 with increased lifetime in human plasma.
Nat Commun 8(1), 1424.
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(2017) A genomic perspective on stoichiometric regulation of soil carbon cycling.
ISME J .
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(2017) A compendium of multi-omic sequence information from the Saanich Inlet water column.
Sci Data 4, 170160.
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(2017) Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients.
Nat Commun 8(1), 1507.
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(2017) Ecophysiology of Freshwater Verrucomicrobia Inferred from Metagenome-Assembled Genomes.
mSphere 2(5).
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(2017) Ammonia-oxidising archaea living at low pH: Insights from comparative genomics.
Environmental Microbiology 19(12), 4939-4952.
10.1111/1462-2920.13971
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(2017) Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs.
New Phytol 214(2), 808-819.
10.1111/nph.14421
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(2017) Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection.
Plant J .
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(2017) Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection.
Plant J .
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(2017) Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders.
Proc Natl Acad Sci U S A 114(28), 7432-7437.
10.1073/pnas.1703424114
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(2017) Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders.
Proc Natl Acad Sci U S A .
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(2017) Sparse panicle1 is required for inflorescence development in Setaria viridis and maize.
Nat Plants 3, 17054.
10.1038/nplants.2017.54
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(2017) Sparse panicle1 is required for inflorescence development in Setaria viridis and maize.
Nat Plants 3, 17054.
10.1038/nplants.2017.54
https://www.nature.com/articles/nplants201754#supplementary-information
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(2017) Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria.
Stand Genomic Sci 12, 10.
10.1186/s40793-017-0229-3
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(2017) Integration of Metagenomic and Stable Carbon Isotope Evidence Reveals the Extent and Mechanisms of Carbon Dioxide Fixation in High-Temperature Microbial Communities.
Front Microbiol 8, 88.
10.3389/fmicb.2017.00088
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(2017) Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds.
Stand Genomic Sci 12, 21.
10.1186/s40793-017-0226-6
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(2017) Draft Genome Sequence of Coniochaeta ligniaria NRRL 30616, a Lignocellulolytic Fungus for Bioabatement of Inhibitors in Plant Biomass Hydrolysates.
Genome Announc 5(4).
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(2017) Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems.
PeerJ 5, e3134.
10.7717/peerj.3134
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(2017) Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems.
PeerJ 5, e3134.
10.7717/peerj.3134
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(2017) Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep.
BMC Res Notes 10(1), 367.
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(2017) Genome-Resolved Meta-Omics Ties Microbial Dynamics to Process Performance in Biotechnology for Thiocyanate Degradation.
Environ Sci Technol 51(5), 2944-2953.
10.1021/acs.est.6b04477
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(2017) The tale of a neglected energy source: Elevated hydrogen exposure affects both microbial diversity and function in soil.
Appl Environ Microbiol 83(11).
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(2017) High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia.
Stand Genomic Sci 12, 7.
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(2017) Comparative genomics of the genus Desulfitobacterium.
FEMS Microbiol Ecol 93(12).
10.1093/femsec/fix135
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(2017) Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota.
Front Microbiol 8, 195.
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(2017) Patterns and drivers of fungal community depth stratification in Sphagnum peat.
FEMS Microbiol Ecol 93(7).
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(2017) The P. patens chromosome-scale assembly reveals moss genome structure and evolution.
Plant J .
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(2017) High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk.
Stand Genomic Sci 12, 31.
10.1186/s40793-017-0242-6
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(2017) High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk.
Stand Genomic Sci 12, 31.
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(2017) Young inversion with multiple linked QTLs under selection in a hybrid zone.
Nature Ecology & Evolution 1, 0119.
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(2017) The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies.
Plant Cell 29(6), 1218-1231.
10.1105/tpc.17.00154
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(2017) The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies.
Plant Cell 29(6), 1218-1231.
10.1105/tpc.17.00154
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(2017) Lignocellulose pretreatment in a fungus-cultivating termite.
Proc Natl Acad Sci U S A 114(18), 4709-4714.
10.1073/pnas.1618360114
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(2017) Lignocellulose pretreatment in a fungus-cultivating termite.
Proc Natl Acad Sci U S A 114(18), 4709-4714.
10.1073/pnas.1618360114
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(2017) Novel reductive dehalogenases from the marine sponge associated bacterium Desulfoluna spongiiphila.
Environ Microbiol Rep 9(5), 537-549.
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(2017) Draft genome sequence of Pseudomonas extremaustralis strain USBA-GBX 515 isolated from Superparamo soil samples in Colombian Andes.
Stand Genomic Sci 12, 78.
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(2017) Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: a case study using the lichen-forming genus Peltigera section Polydactylon.
Mol Phylogenet Evol .
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(2017) Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen -forming genus Peltigera section Polydactylon.
Molecular Phylogenetics and Evolution 117, 10-29.
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(2017) Rice SNP-seek database update: new SNPs, indels, and queries.
Nucleic Acids Res 45(D1), D1075-D1081.
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(2017) QTL associated with resistance to cassava brown streak and cassava mosaic diseases in a bi-parental cross of two Tanzanian farmer varieties, Namikonga and Albert.
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(2017) High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460.
Stand Genomic Sci 12, 46.
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(2017) The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization.
Plant J .
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(2017) The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization.
Plant J .
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(2017) Operation-driven heterogeneity and overlooked feed-associated populations in global anaerobic digester microbiome.
Water Res 124, 77-84.
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(2017) Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile.
Stand Genomic Sci 12, 57.
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(2017) Metagenomic and metatranscriptomic analyses reveal structure and dynamics of a dechlorinating community containing Dehalococcoides mccartyi and corrinoid-providing microorganisms under cobalamin-limited condition.
Appl Environ Microbiol .
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(2017) Conversion of Amazon rainforest to agriculture alters community traits of methane-cycling organisms.
Mol Ecol 26(6), 1547-1556.
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(2017) FunGAP: Fungal Genome Annotation Pipeline Using Evidence-based Gene Model Evaluation.
Bioinformatics .
10.1093/bioinformatics/btx353
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(2017) FunGAP: Fungal Genome Annotation Pipeline Using Evidence-based Gene Model Evaluation.
Bioinformatics .
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(2017) Draft Genome Sequence of Methylocapsa palsarum NE2T, an Obligate Methanotroph from Subarctic Soil.
Genome Announc 5(24).
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(2017) Draft Genome Sequence of Methylocapsa palsarum NE2T, an Obligate Methanotroph from Subarctic Soil.
Genome Announc 5(24).
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(2017) Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.
Nature 541(7638), 536-540.
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(2017) Widespread adenine N6-methylation of active genes in fungi.
Nat Genet 49(6), 964-968.
10.1038/ng.3859
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(2017) Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi.
Nat Commun 8(1), 1843.
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(2017) Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi.
Nat Commun 8(1), 1843.
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(2017) Widespread adenine N6-methylation of active genes in fungi.
Nat Genet 49(6), 964-968.
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(2017) Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae.
Front Microbiol 8, 2501.
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(2017) Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae.
Front Microbiol 8, 2501.
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(2017) Resequencing and annotation of the Nostoc punctiforme ATTC 29133 genome: facilitating biofuel and high-value chemical production.
AMB Express 7(1), 42.
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(2017) The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization.
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(2017) Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus.
G3 (Bethesda) 7(6), 1775-1789.
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(2017) Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus.
G3 (Bethesda) 7(6), 1775-1789.
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(2017) RNA-Dependent Cysteine Biosynthesis in Bacteria and Archaea.
MBio 8(3).
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(2017) RNA-Dependent Cysteine Biosynthesis in Bacteria and Archaea.
MBio 8(3).
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(2017) 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.
Nat Biotechnol 35(7), 676-683.
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(2017) Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements.
Nucleic Acids Res 45(D1), D446-D456.
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(2017) 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.
Nat Biotechnol .
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(2017) A standard-enabled workflow for synthetic biology.
Biochem Soc Trans 45(3), 793-803.
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(2017) A standard-enabled workflow for synthetic biology.
Biochem Soc Trans 45(3), 793-803.
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(2017) Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution.
Mol Biol Evol 34(1), 35-44.
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(2017) Evolution and regulation of Bigelowiella natans light-harvesting antenna system.
Journal of Plant Physiology 217, 68-76.
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Elife 6.
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