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    Data yielded from RIViT-seq increased the number of sigma factor-gene pairs confirmed in Streptomyces coelicolor from 209 to 399. Here, grey arrows denote previously known regulation and red arrows are regulation identified by RIViT-seq; orange nodes mark sigma factors while gray nodes mark other genes. (Otani, H., Mouncey, N.J. Nat Commun 13, 3502 (2022). https://doi.org/10.1038/s41467-022-31191-w)
    Streamlining Regulon Identification in Bacteria
    Regulons are a group of genes that can be turned on or off by the same regulatory protein. RIViT-seq technology could speed up associating transcription factors with their target genes.

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    (PXFuel)
    Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
    In a special issue of the journal Synthetic Biology, JGI scientific users share how they’ve worked with the JGI DNA Synthesis Science Program and what they’ve discovered through their collaborations.

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    A genetic element that generates targeted mutations, called diversity-generating retroelements (DGRs), are found in viruses, as well as bacteria and archaea. Most DGRs found in viruses appear to be in their tail fibers. These tail fibers – signified in the cartoon by the blue virus’ downward pointing ‘arms’— allow the virus to attach to one cell type (red), but not the other (purple). DGRs mutate these ‘arms,’ giving the virus opportunities to switch to different prey, like the purple cell. (Courtesy of Blair Paul)
    A Natural Mechanism Can Turbocharge Viral Evolution
    A team has discovered that diversity generating retroelements (DGRs) are not only widespread, but also surprisingly active. In viruses, DGRs appear to generate diversity quickly, allowing these viruses to target new microbial prey.

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    Photograph of a stream of diatoms beneath Arctic sea ice.
    Polar Phytoplankton Need Zinc to Cope with the Cold
    As part of a long-term collaboration with the JGI Algal Program, researchers studying function and activity of phytoplankton genes in polar waters have found that these algae rely on dissolved zinc to photosynthesize.

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    This data image shows the monthly average sea surface temperature for May 2015. Between 2013 and 2016, a large mass of unusually warm ocean water--nicknamed the blob--dominated the North Pacific, indicated here by red, pink, and yellow colors signifying temperatures as much as three degrees Celsius (five degrees Fahrenheit) higher than average. Data are from the NASA Multi-scale Ultra-high Resolution Sea Surface Temperature (MUR SST) Analysis product. (Courtesy NASA Physical Oceanography Distributed Active Archive Center)
    When “The Blob” Made It Hotter Under the Water
    Researchers tracked the impact of a large-scale heatwave event in the ocean known as “The Blob” as part of an approved proposal through the Community Science Program.

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    A plantation of poplar trees. (David Gilbert)
    Genome Insider podcast: THE Bioenergy Tree
    The US Department of Energy’s favorite tree is poplar. In this episode, hear from ORNL scientists who have uncovered remarkable genetic secrets that bring us closer to making poplar an economical and sustainable source of energy and materials.

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    HPCwire Editor's Choice Award (logo crop) for Best Use of HPC in the Life Sciences
    JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
    The HPCwire Editors Choice Award for Best Use of HPC in Life Sciences went to the Berkeley Lab team comprised of JGI and ExaBiome Project team, supported by the DOE Exascale Computing Project for MetaHipMer, an end-to-end genome assembler that supports “an unprecedented assembly of environmental microbiomes.”

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    With a common set of "baseline metadata," JGI users can more easily access public data sets. (Steve Wilson)
    A User-Centered Approach to Accessing JGI Data
    Reflecting a structural shift in data access, the JGI Data Portal offers a way for users to more easily access public data sets through a common set of metadata.

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    Phytozome portal collage
    A More Intuitive Phytozome Interface
    Phytozome v13 now hosts upwards of 250 plant genomes and provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces they have come to rely on, with a more intuitive interface.

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    screencap from Amundson and Wilkins subsurface microbiome video
    Digging into Microbial Ecosystems Deep Underground
    JGI users and microbiome researchers at Colorado State University have many questions about the microbial communities deep underground, including the role viral infection may play in other natural ecosystems.

    Read more

    Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical output due to growth and viability constraints. Cell extracts provide an alternative format for chemical synthesis in the absence of cell growth by isolating the soluble components of lysed cells. By separating the production of enzymes (during growth) and the biochemical production process (in cell-free reactions), this framework enables biosynthesis of diverse chemical products at volumetric productivities greater than the source strains. (Blake Rasor)
    Boosting Small Molecule Production in Super “Soup”
    Researchers supported through the Emerging Technologies Opportunity Program describe a two-pronged approach that starts with engineered yeast cells but then moves out of the cell structure into a cell-free system.

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    These bright green spots are fluorescently labelled bacteria from soil collected from the surface of plant roots. For reference, the scale bar at bottom right is 10 micrometers long. (Rhona Stuart)
    A Powerful Technique to Study Microbes, Now Easier
    In JGI's Genome Insider podcast: LLNL biologist Jennifer Pett-Ridge collaborated with JGI scientists through the Emerging Technologies Opportunity Program to semi-automate experiments that measure microbial activity in soil.

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    A view of the mangroves from which the giant bacteria were sampled in Guadeloupe. (Hugo Bret)
    Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
    Harnessing JGI and Berkeley Lab resources, researchers characterized a giant - 5,000 times bigger than most bacteria - filamentous bacterium discovered in the Caribbean mangroves.

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    In their approved proposal, Frederick Colwell of Oregon State University and colleagues are interested in the microbial communities that live on Alaska’s glacially dominated Copper River Delta. They’re looking at how the microbes in these high latitude wetlands, such as the Copper River Delta wetland pond shown here, cycle carbon. (Courtesy of Rick Colwell)
    Monitoring Inter-Organism Interactions Within Ecosystems
    Many of the proposals approved through JGI's annual Community Science Program call focus on harnessing genomics to developing sustainable resources for biofuels and bioproducts.

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    Coloring the water, the algae Phaeocystis blooms off the side of the sampling vessel, Polarstern, in the temperate region of the North Atlantic. (Katrin Schmidt)
    Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
    As warm-adapted microbes edge polewards, they’d oust resident tiny algae. It's a trend that threatens to destabilize the delicate marine food web and change the oceans as we know them.

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News & Publications
Home › News & Publications › Publications › 2017 Publications

2017 Publications

Ahn, A. C. et al. (2017) Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio. PLoS One 12(3), e0173517. 10.1371/journal.pone.0173517
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Ai, C. et al. (2017) Evolution of copper arsenate resistance for enhanced enargite bioleaching using the extreme thermoacidophile Metallosphaera sedula. J Ind Microbiol Biotechnol 44(12), 1613-1625. 10.1007/s10295-017-1973-5
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Aime, M. C. et al. (2017) Phylogenetics and Phylogenomics of Rust Fungi. Adv Genet 100, 267-307. 10.1016/bs.adgen.2017.09.011
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Amos, G. C. A. et al. (2017) Comparative transcriptomics as a guide to natural product discovery and biosynthetic gene cluster functionality. Proc Natl Acad Sci U S A 114(52), E11121-E11130. 10.1073/pnas.1714381115
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Andreopoulos, Bill et al. (2017) Clustering Categorical Data. Wiley StatsRef: Statistics Reference Online . 10.1002/9781118445112.stat07907
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Angle, J. C. et al. (2017) Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions. Nat Commun 8(1), 1567. 10.1038/s41467-017-01753-4
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Aserse, A. A. et al. (2017) Draft genome sequences of Bradyrhizobium shewense sp. nov. ERR11(T) and Bradyrhizobium yuanmingense CCBAU 10071(T). Stand Genomic Sci 12, 74. 10.1186/s40793-017-0283-x
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Aserse, A. A. et al. (2017) Draft genome sequence of type strain HBR26T and description of Rhizobium aethiopicum sp. nov. Stand Genomic Sci 12, 14. 10.1186/s40793-017-0220-z
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Baltrus, D. A. et al. (2017) Absence of genome reduction in diverse, facultative endohyphal bacteria. Microb Genom 3(2), e000101. 10.1099/mgen.0.000101
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Becraft, E. D. et al. (2017) Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla. Front Microbiol 8, 2264. 10.3389/fmicb.2017.02264
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Becraft, E. D. et al. (2017) Genomic Comparison of Two Family-Level Groups of the Uncultivated NAG1 Archaeal Lineage from Chemically and Geographically Disparate Hot Springs. Front Microbiol 8, 2082. 10.3389/fmicb.2017.02082
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Beukes, C. W. et al. (2017) Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato. Front Microbiol 8, 1154. 10.3389/fmicb.2017.01154
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Blanc-Mathieu, R. et al. (2017) Population genomics of picophytoplankton unveils novel chromosome hypervariability. Sci Adv 3(7), e1700239. 10.1126/sciadv.1700239
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Booker, A. E. et al. (2017) Sulfide Generation by Dominant Halanaerobium Microorganisms in Hydraulically Fractured Shales. mSphere 2(4). 10.1128/mSphereDirect.00257-17
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Bowers, R. M. et al. (2017) Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol 35(8), 725-731. 10.1038/nbt.3893
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Bowers, R. M. et al. (2017) Sequencing of Genomes from Environmental Single Cells. Methods Mol Biol 1712, 97-111. 10.1007/978-1-4939-7514-3_8
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Bowman, J. L. et al. (2017) Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. Cell 171(2), 287-304 e15. 10.1016/j.cell.2017.09.030
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Brawley, S. H. et al. (2017) Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta). Proc Natl Acad Sci U S A 114(31), E6361-E6370. 10.1073/pnas.1703088114
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Browne, D. R. et al. (2017) Draft Nuclear Genome Sequence of the Liquid Hydrocarbon-Accumulating Green Microalga Botryococcus braunii Race B (Showa). Genome Announc 5(16). 10.1128/genomeA.00215-17
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Browne, D. R. et al. (2017) Draft Nuclear Genome Sequence of the Liquid Hydrocarbon-Accumulating Green Microalga Botryococcus braunii Race B (Showa). Genome Announc 5(16). 10.1128/genomeA.00215-17
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Browne, P. et al. (2017) Genomic composition and dynamics among Methanomicrobiales predict adaptation to contrasting environments. ISME J 11(1), 87-99. 10.1038/ismej.2016.104
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Bushnell, B. et al. (2017) BBMerge - Accurate paired shotgun read merging via overlap. PLoS One 12(10), e0185056. 10.1371/journal.pone.0185056
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Castanera, R. et al. (2017) Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales. BMC Genomics 18(1), 883. 10.1186/s12864-017-4243-z
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Ceballos, S. J. et al. (2017) Development and characterization of a thermophilic, lignin degrading microbiota. Process Biochemistry 63, 193-203. 10.1016/j.procbio.2017.08.018
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Chen, I. A. et al. (2017) IMG/M: integrated genome and metagenome comparative data analysis system. Nucleic Acids Res 45(D1), D507-D516. 10.1093/nar/gkw929
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Chen, L. X. et al. (2017) Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota. ISME J . 10.1038/s41396-017-0002-z
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Choi, D. H. et al. (2017) Draft genome sequence of Marinobacterium rhizophilum CL-YJ9(T) (DSM 18822(T)), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica. Stand Genomic Sci 12, 65. 10.1186/s40793-017-0275-x
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Cobo-Diaz, J. F. et al. (2017) Taxonomic and Functional Diversity of a Quercus pyrenaica Willd. Rhizospheric Microbiome in the Mediterranean Mountains. Forests 8(10). 10.3390/f8100390
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Cole, B. J. et al. (2017) Genome-wide identification of bacterial plant colonization genes. PLoS Biol 15(9), e2002860. 10.1371/journal.pbio.2002860
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Coninx, L. et al. (2017) The SlZRT1 Gene Encodes a Plasma Membrane-Located ZIP (Zrt-, Irt-Like Protein) Transporter in the Ectomycorrhizal Fungus Suillus luteus. Front Microbiol 8, 2320. 10.3389/fmicb.2017.02320
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Contreras-Moreira, B. et al. (2017) Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species. Front Plant Sci 8, 184. 10.3389/fpls.2017.00184
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D'Haeseleer, P. et al. (2017) Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate. Stand Genomic Sci 12, 67. 10.1186/s40793-017-0279-6
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D'Souza, M. et al. (2017) Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks. Methods Mol Biol 1613, 85-99. 10.1007/978-1-4939-7027-8_5
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Daly, P. et al. (2017) Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments. Biotechnol Biofuels 10, 35. 10.1186/s13068-017-0700-9
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Danby, Phillip M. et al. (2017) Glycosyl Cations versus Allylic Cations in Spontaneous and Enzymatic Hydrolysis. Journal of the American Chemical Society 139(31), 10629-10632. 10.1021/jacs.7b05628
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de Matos, G. F. et al. (2017) Bradyrhizobium sacchari sp. nov., a legume nodulating bacterium isolated from sugarcane roots. Arch Microbiol 199(9), 1251-1258. 10.1007/s00203-017-1398-6
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de Raad, M. et al. (2017) OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging. Anal Chem 89(11), 5818-5823. 10.1021/acs.analchem.6b05004
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de Rond, T. et al. (2017) Oxidative cyclization of prodigiosin by an alkylglycerol monooxygenase-like enzyme. Nat Chem Biol . 10.1038/nchembio.2471
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de Rond, T. et al. (2017) Oxidative cyclization of prodigiosin by an alkylglycerol monooxygenase-like enzyme. Nat Chem Biol 13(11), 1155-1157. 10.1038/nchembio.2471
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de Vries, R. P. et al. (2017) Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. Genome Biol 18(1), 28. 10.1186/s13059-017-1151-0
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Diaz-Cardenas, C. et al. (2017) Draft genome and description of Consotaella salsifontis gen. nov. sp. nov., a halophilic, free-living, nitrogen-fixing alphaproteobacterium isolated from an ancient terrestrial saline spring. Int J Syst Evol Microbiol . 10.1099/ijsem.0.002185
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Diaz-Cardenas, C. et al. (2017) Draft genome sequence of Dethiosulfovibrio salsuginis DSM 21565(T) an anaerobic, slightly halophilic bacterium isolated from a Colombian saline spring. Stand Genomic Sci 12, 86. 10.1186/s40793-017-0303-x
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Ding, Y. et al. (2017) Selinene Volatiles Are Essential Precursors for Maize Defense Promoting Fungal Pathogen Resistance. Plant Physiol 175(3), 1455-1468. 10.1104/pp.17.00879
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Dore, J. et al. (2017) The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation. Environ Microbiol 19(3), 1338-1354. 10.1111/1462-2920.13670
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Dossani, Z. Y. et al. (2017) A combinatorial approach to synthetic transcription factor-promoter combinations for yeast strain engineering. Yeast . 10.1002/yea.3292
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Doud, D. F. R. et al. (2017) Novel approaches in function-driven single-cell genomics. FEMS Microbiol Rev . 10.1093/femsre/fux009
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Doud, D. F. R. et al. (2017) Novel approaches in function-driven single-cell genomics. FEMS Microbiol Rev . 10.1093/femsre/fux009
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Eminoglu, A. et al. (2017) Deletion of the hfsB gene increases ethanol production in Thermoanaerobacterium saccharolyticum and several other thermophilic anaerobic bacteria. Biotechnol Biofuels 10, 282. 10.1186/s13068-017-0968-9
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Fernandez-Bayo, J. D. et al. (2017) Comparison of soil biosolarization with mesophilic and thermophilic solid digestates on soil microbial quantity and diversity. Applied Soil Ecology 119, 183-191. 10.1016/j.apsoil.2017.06.016
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Fernandez-Gonzalez, A. J. et al. (2017) The rhizosphere microbiome of burned holm-oak: potential role of the genus Arthrobacter in the recovery of burned soils. Sci Rep 7(1), 6008. 10.1038/s41598-017-06112-3
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Fochi, V. et al. (2017) Fungal and plant gene expression in the Tulasnella calospora-Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas. New Phytol 213(1), 365-379. 10.1111/nph.14279
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Frindte, K. et al. (2017) Draft Genome Sequences of Two Gammaproteobacterial Methanotrophs Isolated from Rice Ecosystems. Genome Announc 5(33). 10.1128/genomeA.00526-17
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Gach, P. C. et al. (2017) Droplet microfluidics for synthetic biology. Lab Chip . 10.1039/c7lc00576h
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Garcia, S. L. et al. (2017) Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations. ISME J . 10.1038/s41396-017-0001-0
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Gasch, A. P. et al. (2017) Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress. PLoS Biol 15(12), e2004050. 10.1371/journal.pbio.2004050
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Gaskell, J. et al. (2017) Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12. Genom Data 14, 21-23. 10.1016/j.gdata.2017.08.003
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Gilbert, R. A. et al. (2017) Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria. Front Microbiol 8, 2340. 10.3389/fmicb.2017.02340
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Gontang, E. A. et al. (2017) Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach. PLoS One 12(5), e0177189. 10.1371/journal.pone.0177189
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Gontang, E. A. et al. (2017) Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach. PLoS One 12(5), e0177189. 10.1371/journal.pone.0177189
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Gordon, S. P. et al. (2017) Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure. Nat Commun 8(1), 2184. 10.1038/s41467-017-02292-8
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Gordon, S. P. et al. (2017) Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure. Nat Commun 8(1), 2184. 10.1038/s41467-017-02292-8
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Gutierrez, T. et al. (2017) Genome Sequence of Oceanicola sp. Strain MCTG156(1a), Isolated from a Scottish Coastal Phytoplankton Net Sample. Genome Announc 5(32). 10.1128/genomeA.00796-17
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Gutierrez, T. et al. (2017) Genome Sequence of Roseovarius sp. Strain MCTG156(2b) Isolated from a Phytoplankton Net Trawl on the Scottish West Coast. Genome Announc 5(35). 10.1128/genomeA.00837-17
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Hadjithomas, M. et al. (2017) IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes. Nucleic Acids Res 45(D1), D560-D565. 10.1093/nar/gkw1103
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Hahn, M. W. et al. (2017) Reclassification of a Polynucleobacter cosmopolitanus strain isolated from tropical Lake Victoria as Polynucleobacter victoriensis sp. nov. Int J Syst Evol Microbiol . 10.1099/ijsem.0.002421
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Haitjema, C. H. et al. (2017) A parts list for fungal cellulosomes revealed by comparative genomics. Nat Microbiol 2, 17087. 10.1038/nmicrobiol.2017.87
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Haitjema, C. H. et al. (2017) A parts list for fungal cellulosomes revealed by comparative genomics. Nat Microbiol 2, 17087. 10.1038/nmicrobiol.2017.87
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Hamilton, J. J. et al. (2017) Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI. mSystems 2(4). 10.1128/mSystems.00091-17
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Harrington, L. B. et al. (2017) A thermostable Cas9 with increased lifetime in human plasma. Nat Commun 8(1), 1424. 10.1038/s41467-017-01408-4
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Hartman, W. H. et al. (2017) A genomic perspective on stoichiometric regulation of soil carbon cycling. ISME J . 10.1038/ismej.2017.115
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Hawley, A. K. et al. (2017) A compendium of multi-omic sequence information from the Saanich Inlet water column. Sci Data 4, 170160. 10.1038/sdata.2017.160
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Hawley, A. K. et al. (2017) Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients. Nat Commun 8(1), 1507. 10.1038/s41467-017-01376-9
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He, S. et al. (2017) Ecophysiology of Freshwater Verrucomicrobia Inferred from Metagenome-Assembled Genomes. mSphere 2(5). 10.1128/mSphere.00277-17
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Herbold, C. W. et al. (2017) Ammonia-oxidising archaea living at low pH: Insights from comparative genomics. Environmental Microbiology 19(12), 4939-4952. 10.1111/1462-2920.13971
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Hossain, M. S. et al. (2017) Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs. New Phytol 214(2), 808-819. 10.1111/nph.14421
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Hsia, M. M. et al. (2017) Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection. Plant J . 10.1111/tpj.13582
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Hsia, M. M. et al. (2017) Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection. Plant J . 10.1111/tpj.13582
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Hu, P. et al. (2017) Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders. Proc Natl Acad Sci U S A 114(28), 7432-7437. 10.1073/pnas.1703424114
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Hu, P. et al. (2017) Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders. Proc Natl Acad Sci U S A . 10.1073/pnas.1703424114
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Huang, Pu et al. (2017) Sparse panicle1 is required for inflorescence development in Setaria viridis and maize. Nat Plants 3, 17054. 10.1038/nplants.2017.54 https://www.nature.com/articles/nplants201754#supplementary-information
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Huang, Pu et al. (2017) Sparse panicle1 is required for inflorescence development in Setaria viridis and maize. Nat Plants 3, 17054. 10.1038/nplants.2017.54 https://www.nature.com/articles/nplants201754#supplementary-information
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Hutt, L. P. et al. (2017) Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria. Stand Genomic Sci 12, 10. 10.1186/s40793-017-0229-3
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Jennings, R. M. et al. (2017) Integration of Metagenomic and Stable Carbon Isotope Evidence Reveals the Extent and Mechanisms of Carbon Dioxide Fixation in High-Temperature Microbial Communities. Front Microbiol 8, 88. 10.3389/fmicb.2017.00088
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Jiao, J. Y. et al. (2017) Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds. Stand Genomic Sci 12, 21. 10.1186/s40793-017-0226-6
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Jimenez, D. J. et al. (2017) Draft Genome Sequence of Coniochaeta ligniaria NRRL 30616, a Lignocellulolytic Fungus for Bioabatement of Inhibitors in Plant Biomass Hydrolysates. Genome Announc 5(4). 10.1128/genomeA.01476-16
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Jungbluth, S. P. et al. (2017) Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems. PeerJ 5, e3134. 10.7717/peerj.3134
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Jungbluth, S. P. et al. (2017) Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems. PeerJ 5, e3134. 10.7717/peerj.3134
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Kamke, J. et al. (2017) Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep. BMC Res Notes 10(1), 367. 10.1186/s13104-017-2671-0
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Kantor, R. S. et al. (2017) Genome-Resolved Meta-Omics Ties Microbial Dynamics to Process Performance in Biotechnology for Thiocyanate Degradation. Environ Sci Technol 51(5), 2944-2953. 10.1021/acs.est.6b04477
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Khdhiri, M. et al. (2017) The tale of a neglected energy source: Elevated hydrogen exposure affects both microbial diversity and function in soil. Appl Environ Microbiol 83(11). 10.1128/AEM.00275-17
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Klonowska, A. et al. (2017) High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia. Stand Genomic Sci 12, 7. 10.1186/s40793-016-0212-4
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Kruse, T. et al. (2017) Comparative genomics of the genus Desulfitobacterium. FEMS Microbiol Ecol 93(12). 10.1093/femsec/fix135
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Kublanov, I. V. et al. (2017) Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota. Front Microbiol 8, 195. 10.3389/fmicb.2017.00195
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Lamit, L. J. et al. (2017) Patterns and drivers of fungal community depth stratification in Sphagnum peat. FEMS Microbiol Ecol 93(7). 10.1093/femsec/fix082
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