(2017) Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio.
PLoS One 12(3), e0173517.
10.1371/journal.pone.0173517
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(2017) Draft genome sequence of type strain HBR26T and description of Rhizobium aethiopicum sp. nov.
Stand Genomic Sci 12, 14.
10.1186/s40793-017-0220-z
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(2017) Absence of genome reduction in diverse, facultative endohyphal bacteria.
Microb Genom 3(2), e000101.
10.1099/mgen.0.000101
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(2017) Draft Nuclear Genome Sequence of the Liquid Hydrocarbon-Accumulating Green Microalga Botryococcus braunii Race B (Showa).
Genome Announc 5(16).
10.1128/genomeA.00215-17
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(2017) Genomic composition and dynamics among Methanomicrobiales predict adaptation to contrasting environments.
ISME J 11(1), 87-99.
10.1038/ismej.2016.104
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(2017) IMG/M: integrated genome and metagenome comparative data analysis system.
Nucleic Acids Res 45(D1), D507-D516.
10.1093/nar/gkw929
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(2017) Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species.
Front Plant Sci 8, 184.
10.3389/fpls.2017.00184
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(2017) Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments.
Biotechnol Biofuels 10, 35.
10.1186/s13068-017-0700-9
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(2017) Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.
Genome Biol 18(1), 28.
10.1186/s13059-017-1151-0
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(2017) The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation.
Environ Microbiol 19(3), 1338-1354.
10.1111/1462-2920.13670
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(2017) Novel approaches in function-driven single-cell genomics.
FEMS Microbiol Rev .
10.1093/femsre/fux009
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(2017) Fungal and plant gene expression in the Tulasnella calospora-Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas.
New Phytol 213(1), 365-379.
10.1111/nph.14279
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(2017) Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach.
PLoS One 12(5), e0177189.
10.1371/journal.pone.0177189
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(2017) IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes.
Nucleic Acids Res 45(D1), D560-D565.
10.1093/nar/gkw1103
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(2017) A parts list for fungal cellulosomes revealed by comparative genomics.
Nat Microbiol 2, 17087.
10.1038/nmicrobiol.2017.87
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(2017) Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection.
Plant J .
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(2017) Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders.
Proc Natl Acad Sci U S A .
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(2017) Sparse panicle1 is required for inflorescence development in Setaria viridis and maize.
Nat Plants 3, 17054.
10.1038/nplants.2017.54
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(2017) Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria.
Stand Genomic Sci 12, 10.
10.1186/s40793-017-0229-3
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(2017) Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds.
Stand Genomic Sci 12, 21.
10.1186/s40793-017-0226-6
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(2017) Draft Genome Sequence of Coniochaeta ligniaria NRRL 30616, a Lignocellulolytic Fungus for Bioabatement of Inhibitors in Plant Biomass Hydrolysates.
Genome Announc 5(4).
10.1128/genomeA.01476-16
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(2017) Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems.
PeerJ 5, e3134.
10.7717/peerj.3134
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(2017) Genome-Resolved Meta-Omics Ties Microbial Dynamics to Process Performance in Biotechnology for Thiocyanate Degradation.
Environ Sci Technol 51(5), 2944-2953.
10.1021/acs.est.6b04477
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(2017) The tale of a neglected energy source: Elevated hydrogen exposure affects both microbial diversity and function in soil.
Appl Environ Microbiol 83(11).
10.1128/AEM.00275-17
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(2017) High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia.
Stand Genomic Sci 12, 7.
10.1186/s40793-016-0212-4
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(2017) Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota.
Front Microbiol 8, 195.
10.3389/fmicb.2017.00195
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(2017) High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk.
Stand Genomic Sci 12, 31.
10.1186/s40793-017-0242-6
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(2017) Young inversion with multiple linked QTLs under selection in a hybrid zone.
Nature Ecology & Evolution 1, 0119.
10.1038/s41559-017-0119
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(2017) The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies.
Plant Cell 29(6), 1218-1231.
10.1105/tpc.17.00154
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(2017) Lignocellulose pretreatment in a fungus-cultivating termite.
Proc Natl Acad Sci U S A 114(18), 4709-4714.
10.1073/pnas.1618360114
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(2017) Rice SNP-seek database update: new SNPs, indels, and queries.
Nucleic Acids Res 45(D1), D1075-D1081.
10.1093/nar/gkw1135
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(2017) Metagenomic and metatranscriptomic analyses reveal structure and dynamics of a dechlorinating community containing Dehalococcoides mccartyi and corrinoid-providing microorganisms under cobalamin-limited condition.
Appl Environ Microbiol .
10.1128/AEM.03508-16
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(2017) Conversion of Amazon rainforest to agriculture alters community traits of methane-cycling organisms.
Mol Ecol 26(6), 1547-1556.
10.1111/mec.14011
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(2017) FunGAP: Fungal Genome Annotation Pipeline Using Evidence-based Gene Model Evaluation.
Bioinformatics .
10.1093/bioinformatics/btx353
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(2017) Draft Genome Sequence of Methylocapsa palsarum NE2T, an Obligate Methanotroph from Subarctic Soil.
Genome Announc 5(24).
10.1128/genomeA.00504-17
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(2017) Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.
Nature 541(7638), 536-540.
10.1038/nature20803
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(2017) Widespread adenine N6-methylation of active genes in fungi.
Nat Genet 49(6), 964-968.
10.1038/ng.3859
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(2017) Resequencing and annotation of the Nostoc punctiforme ATTC 29133 genome: facilitating biofuel and high-value chemical production.
AMB Express 7(1), 42.
10.1186/s13568-017-0338-9
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(2017) Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus.
G3 (Bethesda) 7(6), 1775-1789.
10.1534/g3.117.039396
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(2017) RNA-Dependent Cysteine Biosynthesis in Bacteria and Archaea.
MBio 8(3).
10.1128/mBio.00561-17
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(2017) Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements.
Nucleic Acids Res 45(D1), D446-D456.
10.1093/nar/gkw992
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(2017) 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.
Nat Biotechnol .
10.1038/nbt.3886
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(2017) A standard-enabled workflow for synthetic biology.
Biochem Soc Trans 45(3), 793-803.
10.1042/BST20160347
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(2017) Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution.
Mol Biol Evol 34(1), 35-44.
10.1093/molbev/msw238
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(2017) High quality draft genome of Nakamurella lactea type strain, a rock actinobacterium, and emended description of Nakamurella lactea.
Stand Genomic Sci 12, 4.
10.1186/s40793-016-0216-0
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(2017) Streamlining the Design-to-Build Transition with Build-Optimization Software Tools.
ACS Synth Biol .
10.1021/acssynbio.6b00200
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(2017) The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis.
MBio 8(1).
10.1128/mBio.01969-16
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(2017) Protein structure determination using metagenome sequence data.
Science 355(6322), 294-298.
10.1126/science.aah4043
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(2017) IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.
Nucleic Acids Res 45(D1), D457-D465.
10.1093/nar/gkw1030
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(2017) High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698).
Stand Genomic Sci 12, 24.
10.1186/s40793-017-0236-4
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(2017) The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi.
J Biotechnol 246, 1-3.
10.1016/j.jbiotec.2017.02.012
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(2017) Mobile MUTE specifies subsidiary cells to build physiologically improved grass stomata.
Science 355(6330), 1215-1218.
10.1126/science.aal3254
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(2017) High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76T, isolated from Glycine max (L.) Merr.
Stand Genomic Sci 12, 26.
10.1186/s40793-017-0238-2
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(2017) Complete Genome Sequence of Nitrosomonas cryotolerans ATCC 49181, a Phylogenetically Distinct Ammonia-Oxidizing Bacterium Isolated from Arctic Waters.
Genome Announc 5(11).
10.1128/genomeA.00011-17
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(2017) Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes.
Mycorrhiza .
10.1007/s00572-016-0758-4
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(2017) The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. - Acephala appalanata species complex.
Fungal Biol 121(3), 212-221.
10.1016/j.funbio.2016.11.007
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(2017) Giant viruses with an expanded complement of translation system components.
Science 356(6333), 82-85.
10.1126/science.aal4657
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(2017) Paenibacillus aquistagni sp. nov., isolated from an artificial lake accumulating industrial wastewater.
Antonie Van Leeuwenhoek .
10.1007/s10482-017-0891-x
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(2017) Capturing the genetic makeup of the active microbiome in situ.
ISME J .
10.1038/ismej.2017.59
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(2017) Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism.
Microbiome 5(1), 65.
10.1186/s40168-017-0287-1
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(2017) Permanent Draft Genome Sequence of Desulfurococcus amylolyticus Strain Z-533T, a Peptide and Starch Degrader Isolated from Thermal Springs in the Kamchatka Peninsula and Kunashir Island, Russia.
Genome Announc 5(15).
10.1128/genomeA.00078-17
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(2017) The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa.
Biotechnol Biofuels 10, 149.
10.1186/s13068-017-0807-z
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(2017) Evolution of a multi-step phosphorelay signal transduction system in Ensifer: Recruitment of the sigma factor RpoN and a novel enhancer binding protein triggers acid-activated gene expression.
Mol Microbiol .
10.1111/mmi.13592
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(2017) Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).
J Biomol Tech .
10.7171/jbt.17-2801-004
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(2017) DNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor.
New Phytol .
10.1111/nph.14448
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(2017) Serpentinization-Influenced Groundwater Harbors Extremely Low Diversity Microbial Communities Adapted to High pH.
Front Microbiol 8, 308.
10.3389/fmicb.2017.00308
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(2017) Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens.
Environ Microbiol .
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(2017) The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity.
BMC Genomics 18(1), 225.
10.1186/s12864-017-3606-9
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(2017) Succession in the petroleum reservoir microbiome through an oil field production lifecycle.
ISME J .
10.1038/ismej.2017.78
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(2017) Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.).
Front Microbiol 8, 682.
10.3389/fmicb.2017.00682
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(2017) Interactions among triphenyltin degradation, phospholipid synthesis and membrane characteristics of Bacillus thuringiensis in the presence of d-malic acid.
Chemosphere 169, 403-412.
10.1016/j.chemosphere.2016.10.140
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(2017) Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon.
Plant Physiol 173(1), 269-279.
10.1104/pp.16.01178
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(2017) Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels.
Appl Microbiol Biotechnol 101(6), 2603-2618.
10.1007/s00253-017-8091-1
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(2017) A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism.
PLoS Genet 13(5), e1006737.
10.1371/journal.pgen.1006737
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(2017) Triphenyltin degradation and proteomic response by an engineered Escherichia coli expressing cytochrome P450 enzyme.
Ecotoxicol Environ Saf 137, 29-34.
10.1016/j.ecoenv.2016.11.012
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(2017) Variant profiling of evolving prokaryotic populations.
PeerJ 5, e2997.
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