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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … of novel metabolites, genes, and proteins. It also enables exploration of energy and nutrient exchange, as well as … and plant responses to environmental changes. With advanced mass spectrometry techniques and computational tools, the …
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Data Policy
… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … is granted to proposal PIs, Co-PIs, and collaborators of any given proposal. Third parties (often referred to as … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … publications resulting from such efforts should specify the collaborative nature of the project. Journal policies …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource … present exciting possibilities for scientific exploration, granting access to diverse datasets that deepen …
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Industry Engagement Program
… joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the … computer analysis coupled with liquid chromatography mass spectrometry. We offer accessible, AI-ready large-scale data … User Programs entail a competitive, proposal-based process including peer review. The process is streamlined, with …
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GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in … and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances … focus on microbiome research.  These efforts include exploration of the global diversity of alternative genetic …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … metabolome data, and biosynthetic gene clusters, and tandem mass spectra. So that you would actually document somewhere which metabolome data, for example, in the GNPS framework in San Diego belong to the same samples as …
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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … very much on the foundations of sort of cooperative and collaborative science. It was designed to ensure equitable … the advent of two dimensional NMR and high resolution mass spectrometry. And so some of those stories percolate …
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Products
… and library preparation, Biodesign and pathway engineering Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … assembled to less than 5kb in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA …
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Data Policy & Support
… Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI … JGI Scientist Code of Conduct …
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Analyze Data
… The JGI supports the entire data life cycle — from experimental design to reuse. Armed … the high-quality data we generate, tools like artificial intelligence can empower the global research community.   We … The JGI is involved in efforts to integrate data in support of new research questions that span domains. We also work …
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