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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … and the responsibility for leading the efforts to do so, and JGI expects acknowledgment (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, …
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How to Submit Sequencing Samples
… Please follow the steps outlined below. Click the drop-downs to learn more about each step in the process. If you … assess DNA or RNA mass prior to shipment to the  JGI. The documents below (posted with permission) demonstrate the … and PacBio sequencing workflows and provide guidance as to how to perform sample QC prior to shipment: Importance of …
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How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?
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How To Use Our Systems
… have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … broader biological data ecosystem. Our community of data-downloading users spans tens of thousands of researchers. …
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Natural Prodcast Episode 23: Aaron Puri
… Schedules are hard. But, I’m working on it because I really do want you all to hear this great conversation with Aaron … of Utah in the Department of Chemistry. So welcome. DAN: How do we introduce Aaron? JACKIE: How would you like to be … or even [ Streptomyces ] coelicolor you’ll see it’s much easier to port a biosynthetic gene cluster or a gene or …
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Microbiome Data Science Team
… research.  These efforts include exploration of the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of … and comparative analysis of thousands of archaeal and bacterial type strains ( GEBA-type strains project ), the … Biology  12(8):e1001920 Ivanova N. et al. (2014) Stop Codon Reassignments in the Wild. Science 344(6186):909-13 …
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Plant Microbial Interactions Group
… cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and … all contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are influenced by … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better …
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Viral Genomics Group
… ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research … and computational exploration of uncultivated viral diversity, characterization of molecular mechanisms involved … with activity measurements ( Who is active when/where, and how? ). The JGI Viral Genomics group attempts to address …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… them enough lately, but as always I have transcripts and show notes at naturalprodcast.com — I went a little overboard … history so that didn’t– I wasn’t interested in science as much, and my parents weren’t scientists either. So it was … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… in detail, so if you’d like a link, just check out the show notes above or at naturalprodcast.com. I should also … and also talk about some of the great science that he does. So welcome to the show Paco Barona-Gomez from the … why? I mean, why is it that our organization is spending so much resources on energy and keeping alive a very complex …
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New Lineages of Life Group
… is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in … complexity, and encode for a treasure trove full of novel genes ready to be tapped for downstream applications. … between microbes and their hosts. Our work reveals how these interactions shape ecosystem function, genomic …
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