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… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … gap is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which …

… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our … automation — and further advancing sequence applications, single cell genomics, biodesign, and metabolomics capabilities.    … An assay used for profiling transcription factor binding sites across entire …

… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … microorganisms, by sequencing large populations of bacteria and archaea in their natural environments using …

… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … A primary purpose of this project is to bring educators from a broad range of …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to … Exploring the fascinating world of giant viruses, which challenge our understanding of viral …

… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and … Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and … assembled to less than 5kb in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA …

… Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge … technology in order to enhance the quality of single-cell genomes and directly link functional information … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … genomics-powered tools to study this complexity, including single-cell and spatial transcriptomics barcode-based …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … The research efforts of the group have concentrated in demonstrating the power of …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … to DOE mission is appropriate. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … provides customized analysis, the JGI also participates in publication of results. …