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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts to do so, and JGI …

… “Adopt a Genome” is an informal program for faculty to … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … analysis Expose students to peer review process, conveys responsibility and accountability Promote utilization of JGI …

… … DAN: You’re listening to the US Department of Energy Joint … that are known to be sources of secondary metabolites, like sponges were a really common source for people to try to … often use primary metabolites as building blocks to produce novel molecules. And so we’ve got glycosides being made into …

… facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to … relationships as well as insights into clade-specific novelties and expansions.  … Brachypodium distachyon is an … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… … Dan Udwary: You’re listening to the Department of Energy … and this will be episode 11. This continues our little sprint on genome mining. In the last episode , Alison and I … time called Genbiotics , which was a large program to find novel antibiotics. And this particular project focused …

… thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic … 9. doi: 10.1038/s41587-020-0718-6. Ladau, J. et al. (2019)  Spatial, Temporal, and Phylogenetic Scales of Microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… conversation today covers a lot of ground – her book, bioprospecting vs biopiracy, early stage drug discovery in … use successfully, hopefully, in the future even more so as novel therapies. And that’s how I got on that path of … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …

The Facilities Integrating Collaborations for User Science … on an accelerated timeline as compared with the standard CSP projects. In addition, they must utilize a broad range of … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

… field. Hoping to do these every once in a while, especially when we start talking to people who specialize in … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … machine learning really would help distinguish and predict novel gene clusters. DAN UDWARY: Yeah, it certainly could. …

… for and explore the chemistry of quorum sensing systems, specifically the acyl homoserine lactones.  If you listened … to identify what’s being made. In some cases it might be novel, in some cases it might be– might be a known structure … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …