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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the … under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL).” … Any publication using data from the “ …
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Data Policy
Data produced and released by the US Department of Energy … and information sharing. We also recognize the need to have a limited and time-sensitive protection of certain types … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Natural Prodcast Episode 10: A Primer on Genome Mining
I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … things of the kinds of things that we know about. (The online version of antiSMASH can be found here . It also has …
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Microbiome Data Science Team
… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science …   355(6322):294-298 Paez-Espino D. et al. (2017) IMG/VR: a database of cultured and uncultured DNA Viruses and … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Microbial Program
… catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … resistance genes, and ecosystem information. … The IMG/VR database offers the largest publicly available collection of … … Integrated Microbial Genomes — Virus Resources … Genomes Online Database … Microbial Program in Detail … Projects and …
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as ensure … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and …
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Partnerships: Adopt-A-Genome
… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of Energy Joint Genome Institute, …
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Metagenome Program
Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … Microbial Genomes and Plasmid Resources … Genomes Online Database … National Microbiome Data Collaborative … …
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Publications
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JGI Portals
… of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to … Genome Portal provides unified access to all JGI genomic databases and analytical tools for all JGI sequencing … and their comments. … Data Portal … Genome Portal … Genomes Online Database … Integrated Microbial Genomes and …
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Data Policy & Support
… … Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI … JGI …
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Analyze Data
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