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… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review … from sequence data, employing IMG data and tools for comparative analysis, visualization and interpretation using …

… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …

… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride … bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from there, …

… constraints exerted by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … ecosystem-level impacts of viral infections. The Viral Genomics Group is hosted within the Environmental Genomics …

… Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … drive innovations that could advance our understanding of Earth’s ecosystems. … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and …

… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological … into bioenergy and bioproducts. The program’s fungal genomics research explores new metabolic processes and …

… was a proposal on synthetic biology of engineering gene expression in bacteria – however, the professor was actually … of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And … of metatranscriptomics, where you measure gene expression levels of multiple microbes within a community, see how the …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … associated with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and inter-organismal … microorganisms, by sequencing large populations of bacteria and archaea in their natural environments using …

… if you want– if you really want to, you can do heterologous expression. You can do homologous expression techniques and … a good catalog of what’s out there so that we can do more comparative analysis and maybe– I don’t know– start to put … mechanistic enzymology to natural product biosynthesis to genomics to directed evolution– but it’s just the– it really …