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… The Fungal & Algal Program explores the vast diversity of fungi … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … The Fungal & Algal Program harnesses cutting-edge sequencing … culture collections to produce hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … and any other contributions, such as assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI …

… DNA synthesis and pathway engineering Mass spectrometry based metabolomics Below is a table of standard product … to determine coverage of variants depends on project Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) …

… resilience. The program’s discoveries support a plant based bioeconomy where plants are a major source of chemical … advanced tools, including deep learning algorithms for gene annotation and protein folding models, to improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is …

… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to improving our …

… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and … The Microbial Program focuses on using advanced sequencing technologies to explore microbial … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal …

… The Fungal & Algal Program Advisory Committee is chartered by …

… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … while nurturing a fresh cohort of users Reach the next generation of genome scientists and recruit new talent for …

… Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … For sure. I mean, that goes all the way back to NCBI, gene annotations and ontologies and things that — things have … are protecting the plants against pathogens. So usually fungal or oomycete pathogens. In this case they worked on a …

… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural … Yeah, so any metabolite, produced by bacterial or fungal metabolism by microbes, will have a functional role. … Or genes that you can put a name into it, some sort of annotation, but they are not really well characterized. But, …

… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy … responses. The program employs advanced mass spectrometry-based methods to analyze metabolites from a wide range of …

… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … it has a really interesting biosynthetic pathway because fungal genes are cool. And if you like fungal genes, you …