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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of … list. The intent of the JGI-provided list is not for each individual to be included in every publication, but to be …

… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to … catalog of viral, microbial, and microeukaryote genomes and mobile genetic elements, linked to custom …

… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … talent for biosciences.  Adopt-a-Genome has: ~20 faculty from institutions across the country Efforts in ongoing …

… capabilities and functional genomics, scaling capacity through end-to-end automation — and further advancing … of sequencing products The JGI operates highly scaled short- and long-read sequencing pipelines. This includes advanced sample … profiling transcription factor binding sites across entire genomes. This technology has been further scaled to a …

… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to improving our …

… Prodcast. And it’s our conversation with Nadine Ziemert from the University of Tübingen in Germany. Like me, she’s a … yes, sure, right. And yeah, so we worked on the Salinospora genomes. That was a really fun project. We had Brad on and … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …

… to as “data” for the remainder of this policy) produced through all user projects accepted FY22 and later through the Community Science Program (CSP), Facilities … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

… discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular … and encode for a treasure trove full of novel genes ready to be tapped for downstream applications. … Cataloging Earth's microbial lineages through advanced genomic techniques and computational …

… I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … them, we can promote the health and well-being of not only individual organisms, but collective organisms. DAN UDWARY: … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …

… While an ever-increasing number of phage and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these … to identify, filter, cluster, annotate, and bin viruses from metagenomes. mSystems 9:e00888-24. … Collect CRISPR spacers from metagenomic reads at scale …