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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … experience and capabilities in the analysis, annotation, comparative analysis, and interpretation of sequence, …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… “Adopt a Genome” is an informal program for faculty to … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review …

DAN UDWARY: You’re listening to the Department of Energy … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from there, …

With collaborative user projects, the JGI’s Plant Program delves into … The  Open Green Genomes (OGG) project seeks to develop comparative high quality genomes and annotations across the … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

The Facilities Integrating Collaborations for User Science … for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

The Fungal & Algal Program explores the vast diversity of fungi and … into bioenergy and bioproducts. The program’s fungal genomics research explores new metabolic processes and … provides data access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to …

The Metagenome Program uses advanced sequencing technologies to … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and … The JGI supports microbiome data science by enabling comparative genomics and metagenomics analysis through the …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, … single-cell sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … this, is that I don’t have an awareness of how to go about studying them. Like to me, fungi are, you know, how do you …