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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the …
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Publications
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Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … of submitting, getting feedback , and all the rules and protocols that go along with submitting a paper. That was …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… itself medicine, but the coding within the DNA codes for proteins that do the chemistry that put molecules together … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … the biosynthetic conversions were and what the mechanisms enzymatically were. ALISON TAKEMURA: Where did you see that …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… be the amino acid that is relevant for the synthesis of proteins, and will more often end up in the active site of an … know that it is very hard to find stuff that is universally conserved. No matter what you look at, we will always find a … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … that people work with are actually alpha or gammaproteobacteria. They just have this very restricted niche. … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Fungal & Algal Program
… vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and … of these organisms, the program investigates the biological mechanisms that enable fungi and algae to play a vital role … international research team in collaboration with the JGI. Conserved Fungal Genes of Unknown Function offer a …
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of first, including the flagship internship program between Alabama … Institute. AAMU students spent two months in Berkeley, California honing their scientific skills and collaborating with …
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Metabolomics Program
… fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy and nutrient … processes and the bioeconomy including understanding enzymatic transformations, pathways, and how changes in … allows us to uncover globally distributed molecules with conserved structures, offering fresh insights into DOM's …
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Plant Program
… and integrating various data types to explore the molecular mechanisms behind phenotypic evolution. It also utilizes … including deep learning algorithms for gene annotation and protein folding models, to improve the accuracy of functional … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome … Marc was the Head of Experimental Genomics there, before he decided to leave for graduate school and pursue his … symbiont, a microbe, that produces antibiotic chemistry to protect the crop that the ants grow. So it’s a cool …
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