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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … interpretation of sequence, metabolomics, and functional genomics data types as well as in advanced assembly and …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … The program provides high-quality, large-scale genomic data to advance microbial research that drives … This includes linking strain-level genetic variation to ecological niche adaptations.  Single cell sequencing …

Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review process, …

… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … 578(7795):432-436 Sberro H, et al. (2019) Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

And so, understanding those broader environmental and ecological roles for secondary metabolites is what our … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride …

… microbe-microbe and virus-microbe interactions, over ecological and evolutionary time scales.The Metagenome Program combines large-scale, time-series metagenomic data with detailed characterization of model systems … the research community to perform large-scale multi-omics analyses on new and existing microbiome data.   … The IMG/M …

… constraints exerted by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … but highly recommend using the workflow in  GNPS2 .   … In support of user science, the JGI Metabolomics …

… and biogeochemistry. This research helps translate their genomic potential into practical applications, including … of fungi and algae. These organisms play a critical role in ecological processes such as carbon cycling, biodegradation … genomes, and to conduct comparative and genome-centric analyses of fungi and community annotation. … Phycocosm is a …