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… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural … about today and it will be really good to maybe start with how did you get into this field? How did you get into … fantastic way to get to know the whole community. So I was interacting with almost everybody in the field, and that was …

… The purpose of this policy is to establish communication norms around JGI contributions, … project are appropriately recognized and credited for their work, while also adhering to the authorship policies … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …

… pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and …

… Research in the Woyke laboratory focuses on the utility of single-cell methods to access … taxa of interest. One such effort is targeted at environmental cells that are from candidate phyla, major branches in the … Phylogenetic diversity estimates show that the gap between cultivated and uncultivated …

… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … follow the steps outlined below. Click the drop-downs to learn more about each step in the process. If you have … and PacBio sequencing workflows and provide guidance as to how to perform sample QC prior to shipment: Importance of …

… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … plants and microbes, and understanding microbiome interactions. The  insights derived are crucial for … metabolomics with genomic data to gain insights into how small molecules function within plants, microbes, and …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … modules Currently 206 genomes have been selected with 11 published manuscripts published to-date Testimonials: …

… have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … and its curation in our core processes. This allows us to provide diverse scientific communities with large amounts … high-quality data and metadata, and connect our data to the broader biological data ecosystem. Our community of …

… for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in … defense, nutrient acquisition and communication. Studying how these compounds are biosynthesized and their roles in the environment, can unlock new avenues for …

… focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from … microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of … of microbial communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics …

… user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to environmental changes. The program lays the groundwork for …