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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … up-to-speed with some of the latest developments in microbial genomics, metagenomics, and computational biology, …
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Publication Policy
… The purpose of this policy is to establish communication norms around JGI contributions, ensure … recognized and credited for their work, while also adhering to the authorship policies of the journal in which the … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …
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New Lineages of Life Group
… Our research is focused on the discovery and characterization of … bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … host-virus interactions, the exploration of the functional dark matter as well as the development of novel methods to enable …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … Program focuses on the high-throughput sequencing of microbial communities to uncover the complex interactions …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, … provides high-quality, large-scale genomic data to advance microbial research that drives sustainable solutions in … The Microbial Program focuses on using advanced sequencing technologies to explore microbial …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … uncultivated Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… terms to those emerging features that are natural to this complex, then we might have a better understanding of what … features of the compound. For example, lipids– doesn’t matter if it has one extra carbon or two or one less, at the … move a little bit away from that to try to unmask chemical dark matter. And the idea behind this is that, if we …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using … of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … within those genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better …
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Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor
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Publications
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Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … development, fitness and health. This is a dynamic and complex ecosystem that includes bacteria, fungi, viruses. …
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