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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of … of Energy operated under Contract No. DE-AC02-05CH11231.” … All publications using JGI data produced under a …

The Program also aims to build a global-scale catalog of viral, microbial, and microeukaryote genomes and mobile … of uncultivated microbial lineages. Charting viral ‘dark matter’:   Viruses are abundant in the biosphere and …

… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

… with microeukaryotes. The program also studies giant viruses. Key research areas include terrestrial … metatranscriptomes. It provides rich data such as inferred host taxonomy, conjugation potential, antibiotic resistance … the largest publicly available collection of Uncultivated Viral Genomes, derived from genomes, metagenomes, and …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of … and microbiome datasets. It includes JGI-sequenced and publicly available datasets encompassing >150,000 isolate …

… (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, … host-virus interactions, the exploration of the functional dark matter as well as the development of novel methods to … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… we get to present our conversation with Marnix Medema , from Wageningen University in the Netherlands. Marnix is … even know of your existence back then. So there was no hostilities. Dan Udwary: That is certain, yes. So welcome. I … that the expression of these gene clusters play in these interactions. But also things like trying to predict at …

… symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are … Sai Prahabkar (UC Merced Intern) … Plant / Bacteria / Viral Interactions … Single-cell characterization of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… into the phylogeny and coding potential of microbial dark matter. Nature 499, 431-7 (2013). Hess M., Sczyrba A., Egan … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through … genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… species specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control … datasets provided by IMG users with a comprehensive set of publicly available genome and metagenome datasets. IMG is a …