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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … experience and capabilities in the analysis, annotation, comparative analysis, and interpretation of sequence, metabolomics, and functional genomics data types as well as in advanced assembly and …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and … The JGI supports microbiome data science by enabling comparative genomics and metagenomics analysis through the …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … single-cell sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride … bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from there, …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … to see if I’m going to slip a day on releasing it into the feeds, but I’m trying, you guys. Schedules are hard. But, … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the … for Biotechnology . We are located in the Integrative Genomics Building in the heart of the Berkeley Lab campus, … scientific discovery. Projects focused on organisms for comparative purposes, on model systems for microbe-microbe …

Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … well, I think the day your visit was planned was just a few days before the due date. Dan Udwary: Oh, no. Marnix … of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And …

… are you?  MARCY: Am fine. I live in a pandemic so I’m no different than anyone else.  DAN: Yeah. I mean fine in pandemic … know that that’s ever necessarily like a good description of anyone because chemistry means a lot, especially when … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much …

The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … into bioenergy and bioproducts. The program’s fungal genomics research explores new metabolic processes and … provides data access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to …