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Publication Policy
… recognized and credited for their work, while also adhering to the authorship policies of the journal in which the … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed …
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New Lineages of Life Group
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand … Exploring the fascinating world of giant viruses, which challenge …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to … The Microbial Program focuses on using advanced sequencing … from diverse bacterial and archaeal lineages to improve phylogenetic analysis, metagenomic annotations, and function …
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Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of … cells that are from candidate phyla, major branches in the phylogenetic tree without cultivated representatives. The … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated …
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Publications
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved … approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties …
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Plant Microbial Interactions Group
… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … Plant microbiomes hold the amazing ability to influence plant development, fitness and … characterization methods, in addition to bioinformatics tools to elucidate phage function in this tripartite …
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Natural Prodcast Episode 23: Aaron Puri
… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … to predict or just understand better the language of microbial cell-cell communication. And he told us about his … as tool building. So I worked with a really great guy named Matt Bogyo in grad school synthesizing activity based probes …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology … The research efforts of the group have concentrated in demonstrating the power of data science in tackling grand …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… of Natural Prodcast. A little bit of a bonus episode, since I’m off schedule, but this is an important one that … of microorganisms from Great Salt Lake, which is a hypersaline terminal lake about 30 minutes away from campus. … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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