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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, … environmental challenges, such as improving soil health, carbon sequestration and bioeconomy applications. The … Program supports innovations in sustainable agriculture, carbon sequestration and biotechnology. …
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Publication Policy
… recognized and credited for their work, while also adhering to the authorship policies of the journal in which the … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … data, DNA synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of …
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New Lineages of Life Group
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning … Exploring the fascinating world of giant viruses, which challenge …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed …
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Publications
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and micro-eukaryoes, along with … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … focuses on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to …
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Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics
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Viral Genomics Group
… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at … parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … compounds, Alison. They are – if you can imagine – two carbons in a triple bond attached to two carbons in a double … genomic revolution, to me, as a natural part chemist for microbial natural product, is that I love microbial natural …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … The research efforts of the group have concentrated in demonstrating the power of data science in tackling grand … important biotechnological applications (e.g., new CRISPR-Cas variants and new CRISPR-Cas types) (Nature Communications …
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Natural Prodcast Episode 23: Aaron Puri
… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … about. He works with methylotrophs, which are a group of carbon-fixing bacteria that I would say are are still fairly … to predict or just understand better the language of microbial cell-cell communication. And he told us about his …
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