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Publication Policy
… The purpose of this policy is to establish communication norms … to a research project are appropriately recognized and credited for their work, while also adhering to the … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … which is of fundamental value to improving our understanding of microbial ecology and metabolism by elucidating …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the … diversity and metabolic potential, with implications for energy production, environmental sustainability, and … microbial communities to uncover the complex interactions and functions that shape ecosystems. By decoding the …
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Publications
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of the latest …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic information into … peer-reviewed for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … 1) Review JGI sample QC requirements and protocols Obtaining … prior to shipping samples to the JGI. PI sends Project Manager (PM) a list of organism names (or for metagenomes, …
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across … to ensure a robust offering of sequencing capabilities and products to our users. This includes scaling the … the JGI’s focus on expanding molecular capabilities and functional genomics, scaling capacity through end-to-end …
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … Agreement for Federal Agencies , DNA Synthesis Appendix  and DNA Sequencing Appendix are available for download.) …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … on your own computer, or as a Docker container or Anaconda package .) ALISON TAKEMURA: I just wonder if that name, …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched a joint Critical Minerals and … proposal call . This represents a unique opportunity for researchers to request the capabilities and expertise of … Access to the Molecular Foundry and use of JGI capabilities is free. The JGI supports remote …
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New Lineages of Life Group
… Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … Exploring the fascinating world of giant viruses, which challenge … Understanding the complex relationships between microbes and … Cataloging Earth's microbial lineages through advanced genomic techniques and computational analysis: Through …
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