Search

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, … such as carbon cycling, nutrient cycling, and energy flow. One of the key goals of the Program is to develop a deeper …

The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … of data produced at the facility, provided this is done in a timely fashion. The publications resulting from …

… access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… small genes assembled to less than 5kb in length, cloned into vector of choice Glycerol stock of sequence … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript … Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation of a …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … working with the JGI 120 genomes claimed (or about one per student) Seven student-drafted articles accepted … datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes …

… grade list of goals in life: on that list are being a marine biologist and being a chemist, and it’s actually … the end, we took an approach that was kind of a simplified metagenome sequencing approach to pick this system apart.  … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …

… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the … of Oceanography in San Diego. Bill is a pioneer of marine natural products, getting into the ocean and looking … that the molecules out there would be toxic to cancer cells. And that started something big. Because at that time, …

… and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … with an expanded complement of translation system components. Science, 356 (6333), 82-85 Schulz et al. (2016) A … in cell biology. 25 (6), 339-346 Schulz et al. (2015) Marine amoebae with cytoplasmic and perinuclear symbionts …

… to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists … for a while. Moving forward, I’m hoping to get a new one out every two weeks. This time, we’ve got a great … is always associated with toxicity, basically, killing cells. ALISON: Right, because they’re so reactive. BEN: …

The Micro-Scale Applications group explores the genetic makeup of … technology in order to enhance the quality of single-cell genomes and directly link functional information with individual cells. Research Team    … The JGI uniquely offers the first …

… quality. Yeah, for sure. NADINE ZIEMERT: Yeah, Dan… it’s a marine actinomycete bacterium. So they look kind of like … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot …