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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … the first analysis of data produced at the facility, provided this is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …

… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of …

… catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal lineages to improve … and annotation of all publicly available genomes from three domains of life. It provides tools for analyzing the …

Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … regulation, and noncoding RNAs in microbiomes. The insights from this work have the potential to drive innovations in … and annotation of all publicly available genomes from three domains of life, in a uniquely integrated context.  … …

… agricultural productivity. Research spans diverse areas — from understanding how terrestrial plants and phytoplankton … and environmental sustainability. … Plant Flagship Genomes are selected through discussion with the JGI Plant … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that … quorum sensing allows you to do — generally there’s just three components in these acyl homoserine lactone based … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …

… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to only three phyla. The Woyke group uses single-cell sequencing as … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… nutrient cycling and bioproduct applications.  The team has three subgroups: Synthetic Biology Lab : a user science … platform enables users to validate hypotheses generated from mining genomic data by designing and assembling … that can then be functionally characterized.    We provide custom DNA constructs:  Individually arrayed …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …