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JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …

… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of Energy Joint Genome Institute, builds …

… at improving our collective understanding of ecological and evolutionary parameters driving virus:host dynamics in … as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

… approaches to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, … and virus-microbe interactions, over ecological and evolutionary time scales.The Metagenome Program combines … detailed characterization of model systems to explore the dynamics of microbial ecosystems and their evolution. The …

… types to explore the molecular mechanisms behind phenotypic evolution. It also utilizes advanced tools, including deep … datasets to further gene function research. The  Open Green Genomes (OGG) project seeks to develop comparative … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … lineages of uncultivated genomes from the GEM catalog (in green) and previously existing reference genomes (in gray). … do some sort of slightly novel chemistry. That’s just how evolution works. So if secondary metabolism is really …

… bright guy who’s been thinking for a long time about the evolution and natural products systems. This conversation … this conversation about 10 months ago. I was pretty green at the time and had some really tedious technical … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

And I found her review in natural product reports on the evolution of genome mining and microbes with Mohammad … around us. And we actually don’t know a lot about them by their mate, what their role in nature, how have they been … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …

… datasets, particularly for uncultivated microorganisms, by sequencing large populations of bacteria and archaea in … linking strain-level genetic variation to ecological niche adaptations.  Single cell sequencing approaches are also … families, and pathways, enhancing our understanding of evolutionary diversification and microbial diversity. Learn …

… pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …