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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … experience and capabilities in the analysis, annotation, comparative analysis, and interpretation of sequence, metabolomics, and functional genomics data types as well as in advanced assembly and …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review … of  Dysgonomonas hofstadii  DSM 104969 Isolated from a human abdominal surgery wound. V. Torres, et. al.  2025. …

We need new cancer agents. We need treatments for humans. And it just so happens that bacteria make a lot of … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from there, …

See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well … as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User …

… a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, advancing the … The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …

The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them …

Other projects in the group include the sequencing and comparative analysis of thousands of archaeal and bacterial … compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. Nayfach … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

… annotation and analysis of (meta)genomic, (meta)transcriptomic, and functional genomic data and serving them to users via the … of genome and metagenome datasets in a comprehensive comparative context. The IMG data warehouse integrates …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and … The JGI supports microbiome data science by enabling comparative genomics and metagenomics analysis through the …

… cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying … single-cell sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …