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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa … effort is targeted at environmental cells that are from candidate phyla, major branches in the phylogenetic tree … gap is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which …
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Publication Policy
… The purpose of this policy is to establish communication norms around … recognized and credited for their work, while also adhering to the authorship policies of the journal in which the … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our … — and further advancing sequence applications, single cell genomics, biodesign, and metabolomics capabilities.    …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … in one package so that it opened up secondary metabolism identification to anyone who wanted to do it. And it’s been …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … A primary purpose of this project is to bring educators from a broad range of …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in … and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … to my submission, they were saying that natural product identification– biosynthetic gene cluster identification was … similarity networking to prioritize a number of these candidates that we used an early version of BiG-SCAPE. And …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … and he has a project with the JGI to synthesize the genes for and explore the chemistry of quorum sensing … sensing allows you to do — generally there’s just three components in these acyl homoserine lactone based systems. …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … that were being very successful and taking preclinical candidates into the clinic and to INDs. And it seemed as … mining-based approaches are that other than resistance genes, you have no way of knowing of whether or not a …
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Publications
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to … metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy … Program is focused on understanding the critical roles of metabolites in living systems, particularly as they …
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