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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … our policy on research data and analysis products produced through all user projects accepted FY22 and later. … Read …

… research provides insights into microbial diversity and metabolic potential, with implications for energy … and their metabolic functional potential. This research enables us to better understand how microbial communities … metagenomic data with detailed characterization of model systems to explore the dynamics of microbial …

… data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The … dark matter as well as the development of novel methods to enable large-scale comparative analysis, mining and … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… and synthesis, metabolomics and computational analysis that enable systems-based scientific approaches to these … sequencing scores of microbial species as well as several model organisms and contributing this information freely to … DOE science mission areas of bioenergy and environmental microbiome processes.  Among the JGI’s largest dedicated …

… a Heterologous Expression Report Card toolkit (HERC-tk) to enable users to identify the best host to express their … of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, and signatures of …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … public datasets.  … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, … along with curated environmental- and other metadata to enable comprehensive comparative analysis. Importantly, …

… anchors for metagenomes studies.  While uncovering the metabolic potential of uncultivated lineages is of high value to establish models and hypotheses, experimental data is critical to … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… partner in enabling systems biology analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to enable users to seamlessly access and analyze data on scales …

Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … see if you can see patterns and if you can actually make predictions. And then you get excited if you can make … metagenome studies, and what more JGI and others can do to enable progress in this area of natural products. For …

… learning algorithms for gene annotation and protein folding models, to improve the accuracy of functional predictions and speed up genome analysis. Additionally, the … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …