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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of …

Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … regulation, and noncoding RNAs in microbiomes. The insights from this work have the potential to drive innovations in …

The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of Life, from an international …

… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … et al. (2016)  Metagenomics uncovers gaps in amplicon-based detection of microbial diversity . Nature Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal lineages to improve …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … species specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw … Resequencing SNP and short indel calls, rearrangement detection, population analysis Text file of SNPs (incl …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly describing the project …