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    Green Algae Reveal One mRNA Encodes Many Proteins
    A team of researchers has found numerous examples of polycistronic expression – in which two or more genes are encoded on a single molecule of mRNA – in two species of green algae.

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    Advances in Rapidly Engineering Non-model Bacteria
    CRAGE is a technique for chassis (or strain)-independent recombinase-assisted genome engineering, allowing scientists to conduct genome-wide screens and explore biosynthetic pathways. Now, CRAGE is being applied to other synthetic biology problems.

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    How Maize Makes An Antibiotic Cocktail
    Zealexins are produced in every corn variety and protect maize by fending off fungal and microbial infections using surprisingly few enzymes.

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    Poplar (Populus trichocarpa and P. deltoides) grow in the Advanced Plant Phenotyping Laboratory (APPL) at Oak Ridge National Laboratory in Tennessee. Poplar is an important biofuel feedstock, and Populus trichocarpa is the first tree species to have its genome sequenced — a feat accomplished by JGI. (Image courtesy of Oak Ridge National Laboratory, U.S. Dept. of Energy)
    Podcast: Xiaohan Yang on A Plantiful Future
    Building off plant genomics collaborations between the JGI and Oak Ridge National Laboratory, Xiaohan Yang envisions customizing plants for the benefit of human society.

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    Pennycress – A Solution for Global Food Security, Renewable Energy and Ecosystem Benefits
    Pennycress (Thlaspi arvense) is under development as a winter annual oilseed bioenergy crop. It could produce up to 3 billion gallons of seed oil annually while reducing soil erosion and fertilizer runoff.

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    An Automated Tool for Assessing Virus Data Quality
    CheckV can be broadly utilized by the research community to gauge virus data quality and will help researchers to follow best practices and guidelines for providing the minimum amount of information for an uncultivated virus genome.

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    A One-Stop Shop for Analyzing Algal Genomes
    The PhycoCosm data portal is an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental data.

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    In Natural Prodcast: the basics of genome mining, and how JGI researchers conducted it in IMG/ABC on thousands of metagenome-derived genomes for a Nature Biotechnology paper.

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    Watch the webinar on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.

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    “SIP technologies at EMSL and JGI” Webinar
    The concerted stable isotope-related tools and resources of the JGI and the Environmental Molecular Sciences Laboratory (EMSL) may be requested by applying for the annual “Facilities Integrating Collaborations for User Science” (FICUS) call.

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    CSP Functional Genomics Call Ongoing
    The CSP Functional Genomics call helps users translate genomic information into biological function. Proposals submitted by July 31, 2021 will be part of the next review.

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    Aerial photo of the switchgrass diversity panel late in the 2020 season at the Kellogg Biological Station in Michigan. (Robert Goodwin)
    A Team Effort Toward Targeted Crop Improvements
    A multi-institutional team has produced a high-quality reference sequence of the complex switchgrass genome. Building off this work, researchers at three DOE Bioenergy Research Centers have expanded the network of common gardens and are exploring improvements to switchgrass.

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    Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
    In Nature Biotechnology, a very high quality reference Setaria viridis genome was sequenced, and for the first time in wild populations, a gene related to seed dispersal was identified.

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Home › Webinars › Engagement Webinar: How to Successfully Apply for a CSP Proposal

September 8, 2020

Engagement Webinar: How to Successfully Apply for a CSP Proposal

Tips:

  • Contact us with your questions (jgi-jira+pmosupport@lbl.gov)
  • Carefully read our proposal call description and ensure your idea is aligned
  • Discuss your proposal idea with JGI staff to clarify key points about JGI’s capabilities, technical feasibility, and relevance to the DOE’s mission. 
  • Have someone proofread your proposal to make sure the goals, experimental design, and plan for data utilization are clear.
  • Contact JGI staff for feedback before submitting a proposal.
  • Describe in detail what you will do with the data! Ideally, you or someone on your team will have expertise in this area, or can demonstrate how competencies can be built.
  • We recommend exploring how KBase (www.kbase.us) can support biological data analysis. It is a free, open source analytics platform provided to the research community by DOE. Email engage@kbase.us if you have questions about how KBase can support your CSP data.

On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program (CSP) Applications Webinar inviting researchers to submit white papers to the CSP New Investigator call for proposals. The proposal call is open year-round, but proposals submitted by September 21, 2020, will be included in the next review.

Q&A from the Webinar:

Q(uestion): Can people can mix and match options in their proposal as long as they’re staying under the sequence cap?
A(nswer): Proposals that are looking at multiple areas or multiple ways to answer questions are definitely encouraged. There’s multiple ways to can mix and match synthesis, metabolomics, sequencing. The only requirements are that you stay under the 500-gigabase cap and that you don’t request outside of the sample range that’s listed.

Q: What are the pros and cons of proposing a truly exploratory small proposal that might not max out the whole 500 gigabases? Is it better to try to reach that maximum with broader questions and broader project scope?
A: Focus on strong science and well-thought-out questions. We are looking for projects that can’t easily be done at a core facility, but you don’t need to necessarily just add samples in order to max out the gigabase allocation.

Q: Can PhD candidates be considered for the CSP New Investigative Proposal?
A: At most institutions, a PhD student can be considered a principal investigator (PI). There is no restriction from JGI’s side, but do check with your institution, as there are some that won’t allow this. It’s really important to show that your team has the necessary experience to handle the data, either by adding team members as co-PIs or collaborators on the proposal, or at the very least providing letters of support saying that they will support this work.

Q: Someone submitted a proposal that received good reviews but faced questions about their ability to analyze the data. How can they better demonstrate their capability for being able to carry out the work and utilize the data they were requesting?
A: The reviewers do look at the PI’s track record to make sure that they have already worked with this type of data set. Having a co-PI with complementary skills can show reviewers the team is really able to take advantage of the data and work with the data.

Q: How would you include a reference or citation in a proposal?
A: If you’re presenting preliminary data that’s been published, or if you want to give some background of the field, references would be encouraged. And you can either put those in the individual text section if you have space, or you can upload everything as a supplementary file.

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Filed Under: Blog, Webinars

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